Wall clock time and date at job start Mon Mar 30 2020 01:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42907 * 109.46836 * 149.46012 * 3 2 1 5 5 C 1.42899 * 113.99627 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47036 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.46873 * 54.99758 * 6 5 4 8 8 O 1.42904 * 109.46869 * 294.99972 * 6 5 4 9 9 C 1.53000 * 109.47207 * 175.00173 * 6 5 4 10 10 N 1.46504 * 109.46885 * 184.99768 * 9 6 5 11 11 C 1.38731 * 119.99745 * 179.97438 * 10 9 6 12 12 C 1.38749 * 120.29373 * 0.02562 * 11 10 9 13 13 C 1.38169 * 120.02439 * 179.97438 * 12 11 10 14 14 C 1.38898 * 120.62601 * 0.02562 * 13 12 11 15 15 C 1.36454 * 120.59844 * 359.97438 * 14 13 12 16 16 C 1.40729 * 119.94578 * 359.72255 * 15 14 13 17 17 C 1.41050 * 120.30116 * 180.27466 * 16 15 14 18 18 H 1.07998 * 120.00160 * 205.68019 * 17 16 15 19 19 C 1.39925 * 120.00155 * 25.69183 * 17 16 15 20 20 N 1.30878 * 120.00163 * 15.14512 * 19 17 16 21 21 Si 1.86806 * 120.00054 * 195.15308 * 19 17 16 22 22 H 1.48493 * 109.46954 * 89.99262 * 21 19 17 23 23 H 1.48497 * 109.47125 * 209.99678 * 21 19 17 24 24 H 1.48498 * 109.46759 * 329.99277 * 21 19 17 25 25 H 4.38444 * 5.44360 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.47526 * 29.45874 * 3 2 1 27 27 H 1.08998 * 109.46937 * 269.45908 * 3 2 1 28 28 H 1.09003 * 109.47393 * 299.99841 * 5 4 3 29 29 H 1.08996 * 109.47594 * 60.00054 * 5 4 3 30 30 H 0.96702 * 113.99693 * 300.00129 * 8 6 5 31 31 H 1.09002 * 109.46713 * 304.99157 * 9 6 5 32 32 H 1.09001 * 109.47366 * 64.99515 * 9 6 5 33 33 H 0.96999 * 120.00011 * 359.97438 * 10 9 6 34 34 H 1.07995 * 119.98830 * 0.02562 * 12 11 10 35 35 H 1.07999 * 119.68989 * 179.97438 * 13 12 11 36 36 H 1.08001 * 119.70272 * 179.97438 * 14 13 12 37 37 H 1.08002 * 120.02542 * 180.02562 * 15 14 13 38 38 H 0.97005 * 119.99970 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.1613 -0.6846 5 6 4.5463 1.2594 -0.7415 6 6 4.9403 2.5331 -1.4921 7 1 4.4637 3.3937 -1.0226 8 8 4.5134 2.4356 -2.8525 9 6 6.4600 2.7032 -1.4455 10 7 6.8274 3.9816 -2.0596 11 6 8.1606 4.3582 -2.1329 12 6 9.1510 3.5285 -1.6271 13 6 10.4772 3.9088 -1.7036 14 6 10.8338 5.1194 -2.2838 15 6 9.8807 5.9549 -2.7893 16 6 8.5230 5.5891 -2.7301 17 6 7.5321 6.4444 -3.2556 18 1 6.5234 6.4020 -2.8719 19 6 7.8557 7.3476 -4.2740 20 7 8.9721 7.2075 -4.9426 21 14 6.6945 8.7537 -4.6794 22 1 7.0460 9.9387 -3.8565 23 1 6.8163 9.0968 -6.1190 24 1 5.2982 8.3429 -4.3848 25 1 -1.0501 -0.0004 0.0000 26 1 3.0098 -0.8939 -0.5054 27 1 3.0093 0.0105 1.0276 28 1 4.9487 1.2956 0.2709 29 1 4.9499 0.3910 -1.2620 30 1 4.8989 1.6902 -3.3331 31 1 6.7955 2.6887 -0.4085 32 1 6.9339 1.8880 -1.9922 33 1 6.1384 4.5647 -2.4149 34 1 8.8854 2.5848 -1.1742 35 1 11.2437 3.2591 -1.3078 36 1 11.8749 5.4020 -2.3353 37 1 10.1684 6.8938 -3.2388 38 1 9.1967 7.8339 -5.6484 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251867341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:58 Heat of formation + Delta-G solvation = -38.712807 kcal Electronic energy + Delta-G solvation = -20128.185402 eV Core-core repulsion = 16936.199825 eV Total energy + Delta-G solvation = -3191.985576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.09107 -39.39603 -37.94148 -35.67992 -35.27127 -34.20129 -31.97583 -31.20472 -29.54253 -27.95840 -26.93010 -25.59977 -23.31371 -22.23233 -21.60712 -19.41078 -19.06936 -18.22374 -17.80268 -17.57114 -17.06078 -16.67053 -16.23465 -16.10762 -15.61840 -15.56032 -14.69148 -14.40203 -14.29594 -14.14685 -13.84652 -13.51717 -13.24976 -13.21904 -12.99171 -12.73338 -12.56279 -12.11450 -11.90293 -11.63929 -11.52511 -11.41104 -11.23533 -10.98174 -10.97375 -10.58295 -10.51224 -9.21878 -8.54117 -8.00749 -6.03781 1.06832 1.36428 1.39426 1.47447 1.50835 1.55208 1.81032 2.25696 2.64660 2.86946 3.16242 3.50458 3.56923 3.87624 4.00271 4.02048 4.10468 4.31085 4.42392 4.48730 4.52905 4.55355 4.68585 4.72292 4.86918 5.01618 5.07094 5.19368 5.37292 5.49362 5.68203 5.91626 6.00495 6.12249 6.33353 6.40813 6.59034 6.64433 6.80594 6.92424 7.05259 7.25194 7.33733 8.48729 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018162 B = 0.003892 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.290417 B = 7192.240107 C = 8542.450012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.239 4.239 3 C 0.165 3.835 4 O -0.403 6.403 5 C 0.040 3.960 6 C 0.107 3.893 7 H 0.092 0.908 8 O -0.570 6.570 9 C 0.111 3.889 10 N -0.745 5.745 11 C 0.114 3.886 12 C -0.185 4.185 13 C -0.190 4.190 14 C -0.164 4.164 15 C -0.164 4.164 16 C 0.026 3.974 17 C -0.489 4.489 18 H 0.069 0.931 19 C 0.031 3.969 20 N -0.839 5.839 21 Si 0.974 3.026 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.262 1.262 25 H 0.252 0.748 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.386 0.614 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.392 0.608 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.194 -13.462 8.325 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.239 4.239 3 C 0.090 3.910 4 O -0.323 6.323 5 C -0.037 4.037 6 C 0.047 3.953 7 H 0.110 0.890 8 O -0.377 6.377 9 C -0.014 4.014 10 N -0.378 5.378 11 C 0.013 3.987 12 C -0.209 4.209 13 C -0.210 4.210 14 C -0.183 4.183 15 C -0.185 4.185 16 C 0.021 3.979 17 C -0.521 4.521 18 H 0.087 0.913 19 C -0.181 4.181 20 N -0.468 5.468 21 Si 0.796 3.204 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.186 1.186 25 H 0.268 0.732 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.235 0.765 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.227 0.773 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.522 -12.896 8.303 18.600 hybrid contribution -0.089 0.467 -0.635 0.793 sum -10.611 -12.429 7.669 18.052 Atomic orbital electron populations 1.25878 0.96937 0.97006 0.98735 1.23259 0.95200 1.03106 1.02320 1.19327 0.84354 0.89055 0.98254 1.87978 1.22049 1.44396 1.77893 1.23186 0.80646 0.98060 1.01762 1.22005 0.92370 0.98189 0.82726 0.88988 1.86629 1.72399 1.54936 1.23703 1.21763 0.94132 0.86926 0.98617 1.43945 1.04012 1.21573 1.68308 1.18108 0.84996 0.93663 1.01976 1.20374 0.92406 1.00181 1.07897 1.20561 0.95558 0.97999 1.06851 1.20523 0.97853 0.96634 1.03328 1.20832 0.93241 1.00063 1.04405 1.17603 0.93646 0.91612 0.95040 1.19350 0.96788 1.18248 1.17692 0.91261 1.26553 0.97183 0.99897 0.94439 1.69915 1.24643 1.34439 1.17762 0.85324 0.79061 0.78189 0.77812 1.19117 1.19778 1.18564 0.73187 0.89019 0.88988 0.89691 0.90039 0.76488 0.91146 0.91843 0.77296 0.86114 0.86488 0.88274 0.88540 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 19.25 74.32 1.43 -1.41 16 2 C -0.24 -4.86 13.73 31.12 0.43 -4.44 16 3 C 0.17 2.80 6.41 70.18 0.45 3.25 16 4 O -0.40 -9.32 10.27 -144.34 -1.48 -10.80 16 5 C 0.04 0.72 5.57 71.98 0.40 1.12 16 6 C 0.11 2.66 3.28 30.60 0.10 2.76 16 7 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 8 O -0.57 -16.33 13.25 -144.34 -1.91 -18.24 16 9 C 0.11 3.07 4.54 86.38 0.39 3.46 16 10 N -0.74 -29.57 5.58 -338.05 -1.89 -31.45 16 11 C 0.11 5.37 6.68 38.99 0.26 5.63 16 12 C -0.19 -7.88 9.30 22.38 0.21 -7.67 16 13 C -0.19 -8.24 10.04 22.41 0.22 -8.02 16 14 C -0.16 -7.90 9.96 22.01 0.22 -7.68 16 15 C -0.16 -9.01 8.63 22.46 0.19 -8.82 16 16 C 0.03 1.39 5.58 -21.17 -0.12 1.27 16 17 C -0.49 -26.79 8.51 23.37 0.20 -26.59 16 18 H 0.07 3.65 6.68 -2.91 -0.02 3.64 16 19 C 0.03 1.65 5.19 85.24 0.44 2.09 16 20 N -0.84 -46.17 10.88 21.83 0.24 -45.94 16 21 Si 0.97 40.63 29.59 68.60 2.03 42.66 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 25 H 0.25 2.05 7.80 -4.41 -0.03 2.02 16 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.39 8.22 9.05 -74.06 -0.67 7.55 16 31 H 0.07 1.78 7.95 -2.39 -0.02 1.76 16 32 H 0.06 1.63 7.94 -2.39 -0.02 1.61 16 33 H 0.39 16.70 6.70 -92.71 -0.62 16.08 16 34 H 0.12 4.22 6.73 -2.91 -0.02 4.20 16 35 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 36 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.10 5.60 6.14 -2.91 -0.02 5.58 16 38 H 0.28 14.15 8.30 -92.70 -0.77 13.38 16 Total: -1.00 -69.31 331.66 1.61 -67.70 By element: Atomic # 1 Polarization: 41.31 SS G_CDS: -0.21 Total: 41.09 kcal Atomic # 6 Polarization: -49.86 SS G_CDS: 4.83 Total: -45.03 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -1.65 Total: -77.39 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -3.39 Total: -29.04 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -69.31 1.61 -67.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251867341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.989 kcal (2) G-P(sol) polarization free energy of solvation -69.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds