Wall clock time and date at job start Mon Mar 30 2020 02:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47171 * 2 1 4 4 S 1.81408 * 109.46810 * 119.99480 * 2 1 3 5 5 O 1.42093 * 110.54604 * 316.75019 * 4 2 1 6 6 O 1.42107 * 110.53869 * 180.02562 * 4 2 1 7 7 N 1.65599 * 104.44927 * 68.37923 * 4 2 1 8 8 C 1.46506 * 119.99913 * 89.99600 * 7 4 2 9 9 C 1.50699 * 109.46928 * 95.00113 * 8 7 4 10 10 H 1.08003 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99865 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00518 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99987 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47000 * 60.00482 * 13 11 9 15 15 H 1.48506 * 109.47330 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47185 * 300.00291 * 13 11 9 17 17 C 1.46498 * 120.00006 * 269.99834 * 7 4 2 18 18 C 1.54265 * 110.02979 * 237.90771 * 17 7 4 19 19 C 1.54968 * 104.16064 * 217.13319 * 18 17 7 20 20 C 1.54890 * 102.77512 * 37.88792 * 19 18 17 21 21 C 1.53870 * 110.03352 * 120.68852 * 17 7 4 22 22 H 1.08996 * 109.47522 * 300.00114 * 1 2 3 23 23 H 1.09001 * 109.47141 * 60.00779 * 1 2 3 24 24 H 1.09003 * 109.47027 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47122 * 239.99527 * 2 1 3 26 26 H 1.09005 * 109.47533 * 59.99485 * 3 2 1 27 27 H 1.09002 * 109.47516 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47120 * 299.99950 * 3 2 1 29 29 H 1.09004 * 109.47073 * 214.99941 * 8 7 4 30 30 H 1.09000 * 109.47212 * 335.00023 * 8 7 4 31 31 H 0.96992 * 120.00316 * 179.97438 * 12 11 9 32 32 H 1.09001 * 110.01704 * 359.29724 * 17 7 4 33 33 H 1.08994 * 110.49157 * 335.78453 * 18 17 7 34 34 H 1.09003 * 110.48561 * 98.42565 * 18 17 7 35 35 H 1.08998 * 110.72049 * 279.58277 * 19 18 17 36 36 H 1.08998 * 110.92581 * 156.29501 * 19 18 17 37 37 H 1.08997 * 110.49215 * 203.40518 * 20 19 18 38 38 H 1.09007 * 110.60109 * 80.81904 * 20 19 18 39 39 H 1.08999 * 110.03154 * 238.56971 * 21 17 7 40 40 H 1.09000 * 110.03535 * 0.02562 * 21 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 2.1346 -0.8550 1.4813 5 8 1.3870 -0.4620 2.6240 6 8 3.5554 -0.8678 1.5046 7 7 1.7152 -2.4394 1.2440 8 6 2.6417 -3.3485 0.5647 9 6 3.4575 -4.0927 1.5903 10 1 3.3012 -3.9073 2.6427 11 6 4.4028 -5.0109 1.1850 12 7 4.5929 -5.2371 -0.0965 13 14 5.4145 -5.9329 2.4562 14 1 4.5097 -6.7145 3.3369 15 1 6.3537 -6.8546 1.7677 16 1 6.1850 -4.9622 3.2744 17 6 0.4177 -2.9318 1.7132 18 6 0.6211 -4.1056 2.6933 19 6 -0.5449 -5.0744 2.3717 20 6 -0.6599 -4.9723 0.8304 21 6 -0.3966 -3.4823 0.5293 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.6766 1.9564 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 2.0766 -4.0608 -0.0365 30 1 3.3061 -2.7744 -0.0811 31 1 5.2581 -5.8828 -0.3816 32 1 -0.1318 -2.1277 2.2026 33 1 1.5805 -4.5907 2.5138 34 1 0.5555 -3.7575 3.7242 35 1 -1.4659 -4.7419 2.8505 36 1 -0.2998 -6.0925 2.6741 37 1 -1.6597 -5.2568 0.5027 38 1 0.0912 -5.5975 0.3475 39 1 -1.3417 -2.9458 0.4447 40 1 0.1737 -3.3834 -0.3943 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252476627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:23 Heat of formation + Delta-G solvation = -108.222276 kcal Electronic energy + Delta-G solvation = -21417.029525 eV Core-core repulsion = 18357.473743 eV Total energy + Delta-G solvation = -3059.555782 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.59758 -38.09891 -36.86708 -35.90099 -35.66502 -34.13171 -29.77760 -29.35187 -28.19074 -27.58997 -24.46191 -23.42060 -21.42987 -20.92025 -19.50900 -18.75458 -18.50796 -17.56461 -17.04838 -16.41521 -16.18824 -16.06685 -15.30162 -14.62847 -14.48139 -14.23455 -14.05755 -13.88166 -13.78182 -13.35274 -13.23392 -13.10580 -13.00020 -12.88601 -12.66112 -12.50790 -12.38076 -12.32105 -12.20194 -12.02022 -11.75525 -11.72227 -11.56979 -11.26186 -11.25083 -10.98754 -10.51174 -9.57812 -8.14779 -6.20793 -0.59945 1.37746 1.40889 1.47398 1.86379 2.42876 3.02620 3.14678 3.24533 3.59008 3.80153 3.81458 3.90207 4.15930 4.20329 4.37523 4.59368 4.63225 4.67378 4.72631 4.78811 4.82536 4.85030 4.89180 4.97995 5.06264 5.09139 5.17318 5.21842 5.28219 5.34310 5.44917 5.56678 5.64087 5.76213 5.87442 6.13179 6.21348 6.83451 7.43421 8.92195 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.008758 C = 0.006731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.916000 B = 3196.344631 C = 4159.036982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.575 4.575 3 C -0.149 4.149 4 S 2.587 3.413 5 O -0.992 6.992 6 O -0.998 6.998 7 N -0.985 5.985 8 C 0.275 3.725 9 C -0.526 4.526 10 H 0.050 0.950 11 C 0.014 3.986 12 N -0.923 5.923 13 Si 0.943 3.057 14 H -0.266 1.266 15 H -0.278 1.278 16 H -0.282 1.282 17 C 0.146 3.854 18 C -0.162 4.162 19 C -0.113 4.113 20 C -0.117 4.117 21 C -0.132 4.132 22 H 0.074 0.926 23 H 0.102 0.898 24 H 0.075 0.925 25 H 0.144 0.856 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.111 0.889 29 H 0.036 0.964 30 H 0.012 0.988 31 H 0.264 0.736 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.097 0.903 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.263 7.456 -2.091 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.689 4.689 3 C -0.208 4.208 4 S 2.685 3.315 5 O -0.983 6.983 6 O -0.988 6.988 7 N -0.822 5.822 8 C 0.152 3.848 9 C -0.565 4.565 10 H 0.069 0.931 11 C -0.185 4.185 12 N -0.563 5.563 13 Si 0.769 3.231 14 H -0.191 1.191 15 H -0.203 1.203 16 H -0.208 1.208 17 C 0.040 3.960 18 C -0.201 4.201 19 C -0.151 4.151 20 C -0.154 4.154 21 C -0.171 4.171 22 H 0.093 0.907 23 H 0.121 0.879 24 H 0.094 0.906 25 H 0.162 0.838 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.130 0.870 29 H 0.054 0.946 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.115 0.885 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.679 7.689 -1.449 14.899 hybrid contribution 1.064 -0.708 0.080 1.280 sum -11.615 6.981 -1.369 13.620 Atomic orbital electron populations 1.21757 0.88082 1.04614 1.05459 1.30221 1.08760 1.09745 1.20168 1.21775 1.01801 0.91236 1.05976 1.05555 0.73619 0.74324 0.77968 1.93454 1.73668 1.83136 1.47999 1.93544 1.31266 1.86171 1.87858 1.57364 1.26126 1.25398 1.73270 1.18525 0.86437 0.88429 0.91449 1.21721 1.19391 1.21762 0.93630 0.93140 1.25597 0.97892 0.98066 0.96956 1.69978 1.35315 1.35818 1.15198 0.85843 0.79065 0.78537 0.79678 1.19053 1.20309 1.20826 1.21602 0.82291 0.97207 0.94928 1.23126 1.01808 0.97245 0.97961 1.22399 0.97762 0.98624 0.96273 1.22262 1.01469 0.95920 0.95792 1.22588 1.00066 0.96691 0.97742 0.90691 0.87905 0.90607 0.83846 0.90741 0.91754 0.87041 0.94625 0.97008 0.92665 0.88387 0.89811 0.92926 0.89818 0.92195 0.89496 0.93785 0.88494 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.05 71.98 0.65 -2.18 16 2 C -0.58 -15.08 3.58 30.59 0.11 -14.97 16 3 C -0.15 -3.28 9.20 71.98 0.66 -2.62 16 4 S 2.59 100.98 4.85 -56.49 -0.27 100.71 16 5 O -0.99 -40.51 16.18 -127.65 -2.07 -42.58 16 6 O -1.00 -49.34 16.99 -127.65 -2.17 -51.51 16 7 N -0.98 -40.06 2.64 -493.65 -1.31 -41.37 16 8 C 0.28 13.63 4.49 85.63 0.38 14.01 16 9 C -0.53 -29.51 7.24 25.60 0.19 -29.32 16 10 H 0.05 2.90 6.94 -2.91 -0.02 2.88 16 11 C 0.01 0.79 5.46 84.65 0.46 1.25 16 12 N -0.92 -53.90 13.29 21.45 0.28 -53.61 16 13 Si 0.94 45.36 29.54 68.60 2.03 47.38 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 15 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 16 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 17 C 0.15 4.98 2.62 45.71 0.12 5.10 16 18 C -0.16 -5.99 6.29 31.70 0.20 -5.79 16 19 C -0.11 -3.22 6.91 31.91 0.22 -3.00 16 20 C -0.12 -3.21 6.83 31.67 0.22 -2.99 16 21 C -0.13 -3.61 4.72 31.32 0.15 -3.47 16 22 H 0.07 1.47 7.97 -2.39 -0.02 1.45 16 23 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.08 1.49 5.65 -2.39 -0.01 1.48 16 25 H 0.14 3.58 8.14 -2.39 -0.02 3.56 16 26 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.04 1.78 6.80 -2.38 -0.02 1.76 16 30 H 0.01 0.64 7.61 -2.39 -0.02 0.62 16 31 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 32 H 0.10 3.06 6.90 -2.39 -0.02 3.04 16 33 H 0.08 3.79 4.41 -2.39 -0.01 3.78 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.10 1.94 7.81 -2.39 -0.02 1.92 16 40 H 0.07 1.96 6.88 -2.39 -0.02 1.94 16 Total: -1.00 -71.32 321.90 0.86 -70.45 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 1.01 Total: 14.49 kcal Atomic # 6 Polarization: -47.34 SS G_CDS: 3.36 Total: -43.98 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -1.02 Total: -94.98 kcal Atomic # 8 Polarization: -89.85 SS G_CDS: -4.23 Total: -94.08 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 100.98 SS G_CDS: -0.27 Total: 100.71 kcal Total: -71.32 0.86 -70.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252476627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.769 kcal (2) G-P(sol) polarization free energy of solvation -71.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds