Wall clock time and date at job start Mon Mar 30 2020 01:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32988 * 1 3 3 C 1.50699 * 119.99815 * 2 1 4 4 O 1.42895 * 109.47474 * 359.97438 * 3 2 1 5 5 C 1.47097 * 120.00360 * 179.97438 * 2 1 3 6 6 O 1.21621 * 119.99738 * 359.97438 * 5 2 1 7 7 N 1.34771 * 120.00442 * 180.02562 * 5 2 1 8 8 C 1.46500 * 120.00556 * 180.02562 * 7 5 2 9 9 H 1.09009 * 109.46624 * 324.99750 * 8 7 5 10 10 C 1.52996 * 109.47466 * 205.00158 * 8 7 5 11 11 C 1.50702 * 109.47159 * 64.99479 * 10 8 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 8 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 8 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.50700 * 109.47471 * 84.99708 * 8 7 5 20 20 C 1.38233 * 119.99377 * 39.72808 * 19 8 7 21 21 C 1.38237 * 119.99600 * 179.78842 * 20 19 8 22 22 C 1.38241 * 119.99990 * 0.44354 * 21 20 19 23 23 C 1.38237 * 119.99716 * 359.81238 * 22 21 20 24 24 C 1.38228 * 120.00326 * 220.00479 * 19 8 7 25 25 H 1.08001 * 120.00145 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99915 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47204 * 120.00016 * 3 2 1 28 28 H 1.08999 * 109.47140 * 239.99774 * 3 2 1 29 29 H 0.96701 * 114.00916 * 180.02562 * 4 3 2 30 30 H 0.97002 * 120.00072 * 359.97438 * 7 5 2 31 31 H 1.09004 * 109.47066 * 304.99682 * 10 8 7 32 32 H 1.08994 * 109.47405 * 184.99512 * 10 8 7 33 33 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 34 34 H 1.07995 * 120.00514 * 359.97438 * 20 19 8 35 35 H 1.08001 * 120.00058 * 180.28006 * 21 20 19 36 36 H 1.07995 * 120.00194 * 179.83256 * 22 21 20 37 37 H 1.08001 * 119.99824 * 180.02562 * 23 22 21 38 38 H 1.08005 * 119.99906 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0833 1.3051 0.0000 4 8 1.1548 2.3913 -0.0006 5 6 2.0654 -1.2738 0.0006 6 8 1.4574 -2.3271 0.0015 7 7 3.4132 -1.2739 0.0011 8 6 4.1458 -2.5425 0.0011 9 1 3.5981 -3.2783 0.5903 10 6 5.5327 -2.3307 0.6113 11 6 5.3903 -1.9524 2.0631 12 1 4.4087 -1.8717 2.5064 13 6 6.5134 -1.7156 2.8272 14 7 7.7086 -1.8143 2.2875 15 14 6.3371 -1.2543 4.6287 16 1 5.6343 -2.3441 5.3523 17 1 7.6834 -1.0533 5.2222 18 1 5.5534 0.0019 4.7437 19 6 4.2903 -3.0393 -1.4143 20 6 4.5595 -2.1474 -2.4356 21 6 4.6964 -2.6036 -3.7333 22 6 4.5549 -3.9504 -4.0111 23 6 4.2805 -4.8415 -2.9905 24 6 4.1479 -4.3858 -1.6922 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 2.7100 1.3629 0.8900 28 1 2.7100 1.3629 -0.8900 29 1 1.5705 3.2643 -0.0010 30 1 3.8982 -0.4338 0.0007 31 1 6.0468 -1.5320 0.0765 32 1 6.1097 -3.2518 0.5308 33 1 8.4987 -1.6473 2.8250 34 1 4.6659 -1.0947 -2.2192 35 1 4.9112 -1.9074 -4.5306 36 1 4.6592 -4.3064 -5.0253 37 1 4.1704 -5.8937 -3.2075 38 1 3.9335 -5.0821 -0.8949 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295324625.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:06 Heat of formation + Delta-G solvation = -52.181396 kcal Electronic energy + Delta-G solvation = -21011.594272 eV Core-core repulsion = 17819.024654 eV Total energy + Delta-G solvation = -3192.569618 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.76428 -38.55254 -37.06820 -35.26200 -33.02818 -32.69397 -30.98890 -30.45176 -28.82006 -26.26509 -25.04643 -22.74245 -22.25938 -21.91762 -19.86210 -18.79749 -17.66750 -16.84651 -16.35581 -16.16086 -15.43263 -15.13915 -14.80764 -14.60054 -14.22373 -14.11919 -13.91390 -13.33771 -13.02606 -12.72927 -12.53797 -12.16639 -12.11662 -11.56893 -11.28163 -11.15194 -10.94275 -10.74042 -10.66103 -10.54948 -10.47667 -9.80339 -9.53311 -9.32130 -9.14941 -8.55962 -8.48018 -8.43826 -8.19253 -6.11753 -4.15478 1.65772 1.77708 1.79903 3.26401 3.31819 3.34984 3.65355 3.73235 4.08983 4.25846 4.37628 4.97138 5.22455 5.25209 5.26172 5.29393 5.31181 5.38265 5.45625 5.53986 5.89795 5.92970 5.94122 6.14573 6.34135 6.40874 6.45085 6.54947 6.57420 6.83902 6.84720 6.87911 7.09984 7.39833 7.46332 7.49745 7.59934 7.84836 8.09697 8.23265 8.71962 8.90350 9.49660 10.98651 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.009866 B = 0.007761 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.242119 B = 3607.034674 C = 5648.351588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.188 4.188 3 C 0.111 3.889 4 O -0.571 6.571 5 C 0.553 3.447 6 O -0.548 6.548 7 N -0.696 5.696 8 C 0.183 3.817 9 H 0.088 0.912 10 C 0.024 3.976 11 C -0.522 4.522 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.071 4.071 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.135 4.135 23 C -0.122 4.122 24 C -0.108 4.108 25 H 0.121 0.879 26 H 0.112 0.888 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.383 0.617 30 H 0.400 0.600 31 H 0.024 0.976 32 H 0.035 0.965 33 H 0.263 0.737 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.704 4.463 -9.113 12.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.191 4.191 3 C 0.034 3.966 4 O -0.377 6.377 5 C 0.340 3.660 6 O -0.428 6.428 7 N -0.344 5.344 8 C 0.079 3.921 9 H 0.106 0.894 10 C -0.013 4.013 11 C -0.561 4.561 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.530 5.530 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.073 4.073 20 C -0.126 4.126 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.140 4.140 24 C -0.126 4.126 25 H 0.139 0.861 26 H 0.130 0.870 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.230 0.770 30 H 0.234 0.766 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.326 3.228 -9.054 12.716 hybrid contribution 0.801 1.112 1.018 1.707 sum -7.525 4.339 -8.036 11.833 Atomic orbital electron populations 1.24504 0.94834 1.03018 0.90223 1.21570 0.96241 0.93123 1.08142 1.20896 0.90384 0.84478 1.00867 1.86382 1.36467 1.17046 1.97839 1.18182 0.82610 0.88594 0.76623 1.90751 1.68425 1.32474 1.51154 1.45937 1.05355 1.10207 1.72900 1.20276 0.96441 0.85026 0.90389 0.89402 1.19388 0.88045 0.98402 0.95482 1.21110 0.92718 1.47455 0.94774 0.92417 1.24987 0.95282 0.95384 0.98440 1.69951 0.97538 1.49088 1.36450 0.86655 0.77110 0.79093 0.85143 1.20169 1.21277 1.20261 1.20542 0.96563 0.93661 0.96502 1.20892 0.99852 0.99447 0.92452 1.21040 1.01113 0.95648 0.96492 1.20998 1.01952 0.93653 0.98688 1.21043 1.00726 0.99210 0.93064 1.21018 0.99696 0.95350 0.96567 0.86146 0.87003 0.91466 0.92181 0.76962 0.76568 0.95749 0.94664 0.92782 0.86670 0.86724 0.86817 0.86575 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 13.66 28.91 0.40 -0.83 16 2 C -0.19 -2.84 6.00 -102.85 -0.62 -3.46 16 3 C 0.11 1.34 6.30 36.01 0.23 1.57 16 4 O -0.57 -6.15 12.08 -35.23 -0.43 -6.58 16 5 C 0.55 10.25 7.71 -12.67 -0.10 10.16 16 6 O -0.55 -11.93 15.88 5.26 0.08 -11.85 16 7 N -0.70 -12.72 3.98 -56.12 -0.22 -12.94 16 8 C 0.18 3.75 2.12 -69.08 -0.15 3.60 16 9 H 0.09 1.98 7.44 -51.92 -0.39 1.59 16 10 C 0.02 0.57 4.50 -27.88 -0.13 0.45 16 11 C -0.52 -13.74 8.84 -34.44 -0.30 -14.04 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 15 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 C -0.07 -1.34 4.91 -104.63 -0.51 -1.85 16 20 C -0.11 -1.83 9.33 -39.58 -0.37 -2.20 16 21 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 22 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 23 C -0.12 -1.86 10.05 -39.59 -0.40 -2.25 16 24 C -0.11 -1.90 9.67 -39.59 -0.38 -2.28 16 25 H 0.12 1.48 6.89 -52.49 -0.36 1.11 16 26 H 0.11 1.60 7.49 -52.49 -0.39 1.21 16 27 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 28 H 0.06 0.64 8.11 -51.93 -0.42 0.21 16 29 H 0.38 2.30 9.12 45.56 0.42 2.71 16 30 H 0.40 6.61 7.44 -40.82 -0.30 6.31 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.12 1.80 7.71 -52.49 -0.40 1.40 16 35 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.12 2.03 8.04 -52.48 -0.42 1.61 16 LS Contribution 331.57 15.07 5.00 5.00 Total: -1.00 -32.16 331.57 -7.43 -39.59 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -4.35 Total: 9.67 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -3.22 Total: -14.16 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.51 Total: -37.54 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.34 Total: -18.43 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.16 -7.43 -39.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295324625.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.592 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds