Wall clock time and date at job start Mon Mar 30 2020 01:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32988 * 1 3 3 C 1.50699 * 119.99815 * 2 1 4 4 O 1.42895 * 109.47474 * 359.97438 * 3 2 1 5 5 C 1.47097 * 120.00360 * 179.97438 * 2 1 3 6 6 O 1.21621 * 119.99738 * 359.97438 * 5 2 1 7 7 N 1.34771 * 120.00442 * 180.02562 * 5 2 1 8 8 C 1.46500 * 120.00556 * 180.02562 * 7 5 2 9 9 H 1.09009 * 109.46624 * 324.99750 * 8 7 5 10 10 C 1.52996 * 109.47466 * 205.00158 * 8 7 5 11 11 C 1.50702 * 109.47159 * 64.99479 * 10 8 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 8 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 8 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.50700 * 109.47471 * 84.99708 * 8 7 5 20 20 C 1.38233 * 119.99377 * 39.72808 * 19 8 7 21 21 C 1.38237 * 119.99600 * 179.78842 * 20 19 8 22 22 C 1.38241 * 119.99990 * 0.44354 * 21 20 19 23 23 C 1.38237 * 119.99716 * 359.81238 * 22 21 20 24 24 C 1.38228 * 120.00326 * 220.00479 * 19 8 7 25 25 H 1.08001 * 120.00145 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99915 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47204 * 120.00016 * 3 2 1 28 28 H 1.08999 * 109.47140 * 239.99774 * 3 2 1 29 29 H 0.96701 * 114.00916 * 180.02562 * 4 3 2 30 30 H 0.97002 * 120.00072 * 359.97438 * 7 5 2 31 31 H 1.09004 * 109.47066 * 304.99682 * 10 8 7 32 32 H 1.08994 * 109.47405 * 184.99512 * 10 8 7 33 33 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 34 34 H 1.07995 * 120.00514 * 359.97438 * 20 19 8 35 35 H 1.08001 * 120.00058 * 180.28006 * 21 20 19 36 36 H 1.07995 * 120.00194 * 179.83256 * 22 21 20 37 37 H 1.08001 * 119.99824 * 180.02562 * 23 22 21 38 38 H 1.08005 * 119.99906 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0833 1.3051 0.0000 4 8 1.1548 2.3913 -0.0006 5 6 2.0654 -1.2738 0.0006 6 8 1.4574 -2.3271 0.0015 7 7 3.4132 -1.2739 0.0011 8 6 4.1458 -2.5425 0.0011 9 1 3.5981 -3.2783 0.5903 10 6 5.5327 -2.3307 0.6113 11 6 5.3903 -1.9524 2.0631 12 1 4.4087 -1.8717 2.5064 13 6 6.5134 -1.7156 2.8272 14 7 7.7086 -1.8143 2.2875 15 14 6.3371 -1.2543 4.6287 16 1 5.6343 -2.3441 5.3523 17 1 7.6834 -1.0533 5.2222 18 1 5.5534 0.0019 4.7437 19 6 4.2903 -3.0393 -1.4143 20 6 4.5595 -2.1474 -2.4356 21 6 4.6964 -2.6036 -3.7333 22 6 4.5549 -3.9504 -4.0111 23 6 4.2805 -4.8415 -2.9905 24 6 4.1479 -4.3858 -1.6922 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 2.7100 1.3629 0.8900 28 1 2.7100 1.3629 -0.8900 29 1 1.5705 3.2643 -0.0010 30 1 3.8982 -0.4338 0.0007 31 1 6.0468 -1.5320 0.0765 32 1 6.1097 -3.2518 0.5308 33 1 8.4987 -1.6473 2.8250 34 1 4.6659 -1.0947 -2.2192 35 1 4.9112 -1.9074 -4.5306 36 1 4.6592 -4.3064 -5.0253 37 1 4.1704 -5.8937 -3.2075 38 1 3.9335 -5.0821 -0.8949 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295324625.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:06 Heat of formation + Delta-G solvation = -73.994142 kcal Electronic energy + Delta-G solvation = -21012.540143 eV Core-core repulsion = 17819.024654 eV Total energy + Delta-G solvation = -3193.515490 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.20922 -39.84179 -38.01858 -36.87011 -34.76486 -34.11787 -32.38261 -31.69595 -30.55576 -27.39177 -26.69078 -24.21474 -23.78283 -23.24810 -21.34962 -20.19008 -18.70723 -18.54888 -17.72034 -17.57481 -16.90679 -16.43250 -16.35832 -15.96329 -15.46710 -15.36030 -15.20084 -14.77163 -14.45352 -14.19770 -14.10081 -13.69842 -13.48388 -13.17157 -12.93284 -12.66268 -12.46827 -12.31628 -12.16608 -11.89067 -11.60957 -11.46729 -11.36455 -11.04289 -10.58780 -10.26776 -9.99681 -9.76360 -9.53382 -8.21387 -6.31893 0.43051 0.50603 0.55179 1.39345 1.41317 1.49156 2.25729 2.33136 2.39076 2.96195 3.12179 3.19356 3.87469 3.97898 4.02332 4.13340 4.20386 4.31404 4.40859 4.44102 4.54046 4.63791 4.74595 4.77082 4.85543 5.11266 5.19007 5.24256 5.32601 5.39868 5.42721 5.58304 5.60228 5.63389 5.76266 5.88963 6.14824 6.19338 6.64281 6.80318 6.90009 7.26275 7.37137 8.89019 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.009866 B = 0.007761 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.242119 B = 3607.034674 C = 5648.351588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.205 4.205 3 C 0.119 3.881 4 O -0.578 6.578 5 C 0.549 3.451 6 O -0.589 6.589 7 N -0.690 5.690 8 C 0.198 3.802 9 H 0.057 0.943 10 C 0.039 3.961 11 C -0.533 4.533 12 H 0.052 0.948 13 C 0.013 3.987 14 N -0.924 5.924 15 Si 0.955 3.045 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.264 1.264 19 C -0.100 4.100 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.134 4.134 25 H 0.144 0.856 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.405 0.595 30 H 0.408 0.592 31 H 0.014 0.986 32 H 0.005 0.995 33 H 0.265 0.735 34 H 0.122 0.878 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.144 0.856 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.248 5.829 -10.339 14.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.208 4.208 3 C 0.042 3.958 4 O -0.388 6.388 5 C 0.339 3.661 6 O -0.472 6.472 7 N -0.338 5.338 8 C 0.093 3.907 9 H 0.076 0.924 10 C 0.001 3.999 11 C -0.571 4.571 12 H 0.070 0.930 13 C -0.186 4.186 14 N -0.564 5.564 15 Si 0.780 3.220 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.189 1.189 19 C -0.101 4.101 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.141 4.141 24 C -0.152 4.152 25 H 0.162 0.838 26 H 0.121 0.879 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.256 0.744 30 H 0.244 0.756 31 H 0.033 0.967 32 H 0.023 0.977 33 H 0.074 0.926 34 H 0.140 0.860 35 H 0.166 0.834 36 H 0.170 0.830 37 H 0.162 0.838 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.864 4.637 -10.283 14.346 hybrid contribution 0.934 0.652 1.329 1.750 sum -7.930 5.290 -8.955 13.079 Atomic orbital electron populations 1.24677 0.94440 1.03669 0.88075 1.21560 0.96584 0.92892 1.09781 1.20745 0.90028 0.83512 1.01529 1.86310 1.36642 1.18017 1.97827 1.18735 0.82358 0.89526 0.75524 1.90721 1.69034 1.34327 1.53075 1.45806 1.05555 1.09723 1.72713 1.19770 0.94008 0.85383 0.91533 0.92440 1.19128 0.89703 0.96294 0.94761 1.21366 0.92502 1.47173 0.96016 0.92958 1.25761 0.94923 0.95298 1.02612 1.70060 0.98220 1.50053 1.38052 0.85661 0.77287 0.79076 0.79984 1.20261 1.20741 1.18919 1.20444 0.99226 0.94722 0.95726 1.21074 1.00215 0.99561 0.93143 1.21452 0.99703 0.96779 0.96241 1.21484 0.99800 0.93220 1.00158 1.21390 0.99663 1.01018 0.92054 1.21176 1.01059 0.95011 0.97984 0.83826 0.87891 0.91668 0.90611 0.74387 0.75566 0.96723 0.97719 0.92646 0.86047 0.83443 0.83026 0.83824 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.88 13.66 66.65 0.91 -0.97 16 2 C -0.21 -6.05 6.00 -18.71 -0.11 -6.16 16 3 C 0.12 2.67 6.30 71.24 0.45 3.12 16 4 O -0.58 -10.83 12.08 -148.98 -1.80 -12.63 16 5 C 0.55 20.79 7.71 86.57 0.67 21.46 16 6 O -0.59 -26.61 15.88 -4.10 -0.07 -26.67 16 7 N -0.69 -25.95 3.98 -449.71 -1.79 -27.74 16 8 C 0.20 8.57 2.12 44.24 0.09 8.66 16 9 H 0.06 2.79 7.44 -2.38 -0.02 2.77 16 10 C 0.04 1.93 4.50 29.85 0.13 2.07 16 11 C -0.53 -28.85 8.84 25.60 0.23 -28.62 16 12 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 13 C 0.01 0.72 5.46 84.66 0.46 1.18 16 14 N -0.92 -53.46 13.29 21.45 0.28 -53.17 16 15 Si 0.95 43.06 29.54 68.60 2.03 45.08 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 19 C -0.10 -3.88 4.91 -19.87 -0.10 -3.97 16 20 C -0.12 -4.06 9.33 22.27 0.21 -3.86 16 21 C -0.12 -3.39 10.05 22.27 0.22 -3.16 16 22 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 23 C -0.12 -3.58 10.05 22.27 0.22 -3.35 16 24 C -0.13 -4.84 9.67 22.27 0.22 -4.63 16 25 H 0.14 3.15 6.89 -2.91 -0.02 3.13 16 26 H 0.10 2.91 7.49 -2.91 -0.02 2.89 16 27 H 0.07 1.48 8.11 -2.39 -0.02 1.46 16 28 H 0.08 1.44 8.11 -2.39 -0.02 1.42 16 29 H 0.40 3.61 9.12 -74.06 -0.68 2.93 16 30 H 0.41 13.71 7.44 -92.71 -0.69 13.02 16 31 H 0.01 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 34 H 0.12 3.76 7.71 -2.91 -0.02 3.73 16 35 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 36 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 38 H 0.11 4.06 8.04 -2.91 -0.02 4.04 16 Total: -1.00 -70.89 331.57 2.19 -68.70 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: -0.29 Total: 27.76 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 3.83 Total: -21.32 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -1.51 Total: -80.91 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -1.86 Total: -39.30 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -70.89 2.19 -68.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295324625.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.297 kcal (2) G-P(sol) polarization free energy of solvation -70.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds