Wall clock time and date at job start Mon Mar 30 2020 02:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47250 * 2 1 4 4 C 1.53007 * 109.46865 * 239.99703 * 2 1 3 5 5 C 1.50701 * 109.46943 * 65.00301 * 4 2 1 6 6 H 1.08004 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99837 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00138 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99835 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47029 * 60.00300 * 9 7 5 11 11 H 1.48502 * 109.47151 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47416 * 300.00497 * 9 7 5 13 13 C 1.52997 * 109.46728 * 120.00393 * 2 1 3 14 14 N 1.46904 * 109.47098 * 294.99550 * 13 2 1 15 15 C 1.46903 * 111.00157 * 180.02562 * 14 13 2 16 16 H 1.08996 * 108.77792 * 327.84929 * 15 14 13 17 17 C 1.54213 * 108.92155 * 86.45285 * 15 14 13 18 18 S 1.83830 * 102.85552 * 145.78928 * 17 15 14 19 19 O 1.42100 * 109.81250 * 77.68365 * 18 17 15 20 20 O 1.42105 * 109.80896 * 211.99543 * 18 17 15 21 21 C 1.83816 * 94.23798 * 324.85745 * 18 17 15 22 22 C 1.52382 * 108.92502 * 209.24441 * 15 14 13 23 23 H 1.08999 * 108.81835 * 118.58597 * 22 15 14 24 24 C 1.53000 * 108.92685 * 359.97438 * 22 15 14 25 25 H 1.09005 * 109.46801 * 59.99780 * 1 2 3 26 26 H 1.08998 * 109.47665 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46688 * 300.00377 * 1 2 3 28 28 H 1.09000 * 109.46856 * 185.00068 * 4 2 1 29 29 H 1.09003 * 109.47111 * 305.00404 * 4 2 1 30 30 H 0.96997 * 119.99809 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.47168 * 174.99511 * 13 2 1 32 32 H 1.09002 * 109.47474 * 54.99527 * 13 2 1 33 33 H 1.00905 * 110.99930 * 303.95813 * 14 13 2 34 34 H 1.08993 * 110.73525 * 27.44662 * 17 15 14 35 35 H 1.09000 * 110.73291 * 264.12456 * 17 15 14 36 36 H 1.08995 * 110.73984 * 153.48144 * 21 18 17 37 37 H 1.09005 * 110.73855 * 276.62213 * 21 18 17 38 38 H 1.09002 * 109.47406 * 295.75602 * 24 22 15 39 39 H 1.09001 * 109.46697 * 55.75720 * 24 22 15 40 40 H 1.08999 * 109.47126 * 175.75294 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0807 0.9746 -2.3757 7 6 1.9932 -0.4018 -3.7283 8 7 2.6763 -1.5189 -3.8512 9 14 1.4997 0.5633 -5.2496 10 1 2.0920 1.9236 -5.1865 11 1 1.9945 -0.1369 -6.4621 12 1 0.0198 0.6701 -5.3095 13 6 2.0399 -0.7213 1.2492 14 7 1.6513 0.0373 2.4456 15 6 2.1256 -0.6267 3.6672 16 1 2.1256 -1.7042 3.5034 17 6 3.5678 -0.1651 3.9595 18 16 3.6246 -0.1399 5.7968 19 8 3.7652 -1.4641 6.2925 20 8 4.5037 0.8861 6.2373 21 6 1.8807 0.4118 5.9791 22 6 1.1713 -0.3003 4.8095 23 1 0.7306 -1.2277 5.1752 24 6 0.0562 0.6043 4.2814 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 3.1263 -0.7996 -1.2056 29 1 1.6053 -1.7199 -1.2952 30 1 2.9235 -1.8419 -4.7318 31 1 3.1263 -0.7997 1.2056 32 1 1.6052 -1.7199 1.2951 33 1 1.9882 0.9873 2.3967 34 1 3.7437 0.8312 3.5542 35 1 4.2894 -0.8782 3.5609 36 1 1.4707 0.0858 6.9349 37 1 1.8057 1.4945 5.8777 38 1 0.4813 1.5548 3.9588 39 1 -0.4348 0.1206 3.4369 40 1 -0.6726 0.7821 5.0722 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308946256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:23 Heat of formation + Delta-G solvation = -81.160132 kcal Electronic energy + Delta-G solvation = -19861.030160 eV Core-core repulsion = 16802.647880 eV Total energy + Delta-G solvation = -3058.382279 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.84991 -37.26744 -36.24525 -35.81444 -33.20098 -31.83839 -29.85105 -27.72742 -26.79466 -25.23151 -24.07591 -22.46961 -20.02628 -19.16424 -19.07262 -17.05918 -16.52167 -16.39007 -16.18961 -15.69532 -14.93866 -14.53884 -14.23944 -14.18030 -13.84361 -13.35561 -12.99083 -12.59326 -12.43704 -12.31903 -12.27702 -12.19359 -11.97631 -11.66934 -11.51306 -11.32665 -10.94349 -10.88406 -10.85957 -10.77231 -10.47509 -10.33797 -10.31029 -9.77267 -9.20589 -9.02022 -8.36592 -8.30681 -6.01377 -4.02932 -0.19877 2.20505 3.31597 3.33131 3.36483 3.38490 3.65551 3.94997 4.19353 4.42895 4.46520 4.49914 4.64238 4.70738 5.11848 5.27696 5.32499 5.34517 5.48104 5.54852 5.61121 5.75682 5.89218 6.03387 6.06128 6.29636 6.40522 6.45529 6.59439 6.89458 7.07723 7.10434 7.20225 7.42928 7.63857 7.79109 7.98102 8.41576 9.03194 9.60788 11.10066 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.034746 B = 0.003509 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.650133 B = 7976.590675 C = 8361.018731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.515 4.515 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.058 3.942 14 N -0.667 5.667 15 C 0.091 3.909 16 H 0.099 0.901 17 C -0.609 4.609 18 S 2.376 3.624 19 O -0.933 6.933 20 O -0.943 6.943 21 C -0.572 4.572 22 C -0.083 4.083 23 H 0.092 0.908 24 C -0.120 4.120 25 H 0.053 0.947 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.012 0.988 29 H 0.016 0.984 30 H 0.260 0.740 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.342 0.658 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.544 3.402 19.222 19.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.553 4.553 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.070 4.070 14 N -0.297 5.297 15 C -0.022 4.022 16 H 0.118 0.882 17 C -0.740 4.740 18 S 2.560 3.440 19 O -0.930 6.930 20 O -0.940 6.940 21 C -0.703 4.703 22 C -0.103 4.103 23 H 0.111 0.889 24 C -0.178 4.178 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.161 0.839 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.339 2.777 19.791 20.121 hybrid contribution 0.265 0.807 -1.603 1.814 sum -2.074 3.584 18.187 18.653 Atomic orbital electron populations 1.21602 0.95655 1.00617 1.00193 1.21203 0.96035 0.98921 0.93982 0.92795 1.19116 0.95890 0.95585 0.90415 1.21185 1.34820 1.08314 0.90991 0.92633 1.25016 0.95277 0.95078 0.99110 1.69950 1.38937 1.21195 1.23548 0.86689 0.78910 0.80092 0.82486 1.20317 1.21357 1.20254 1.22289 0.97639 0.97802 0.89319 1.60887 1.62467 1.05756 1.00628 1.21813 0.86668 1.00996 0.92733 0.88235 1.31167 1.06453 1.11136 1.25292 1.09477 0.79095 0.75762 0.79680 1.93633 1.85651 1.36143 1.77598 1.93609 1.62225 1.58532 1.79589 1.30503 1.22250 1.10921 1.06576 1.21327 0.97563 1.00409 0.91020 0.88947 1.21589 0.96337 0.99090 1.00779 0.92760 0.94126 0.93903 0.96971 0.96555 0.93000 0.95333 0.91228 0.83867 0.84412 0.84467 0.84808 0.84517 0.92460 0.89993 0.93848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 8.89 37.16 0.33 -1.86 16 2 C -0.08 -1.54 2.48 -90.62 -0.22 -1.77 16 3 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 4 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 5 C -0.51 -14.03 8.41 -34.44 -0.29 -14.32 16 6 H 0.06 1.47 7.06 -52.48 -0.37 1.10 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.06 0.87 4.85 -3.82 -0.02 0.85 16 14 N -0.67 -7.48 3.41 -106.38 -0.36 -7.84 16 15 C 0.09 0.83 2.95 -67.39 -0.20 0.63 16 16 H 0.10 0.94 7.71 -51.93 -0.40 0.54 16 17 C -0.61 -4.98 6.85 37.79 0.26 -4.72 16 18 S 2.38 20.66 6.08 -107.50 -0.65 20.01 16 19 O -0.93 -11.37 18.17 -57.67 -1.05 -12.42 16 20 O -0.94 -11.56 18.17 -57.67 -1.05 -12.61 16 21 C -0.57 -3.54 6.86 37.79 0.26 -3.28 16 22 C -0.08 -0.63 3.18 -90.30 -0.29 -0.92 16 23 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 24 C -0.12 -0.98 7.92 37.16 0.29 -0.69 16 25 H 0.05 1.06 6.95 -51.93 -0.36 0.70 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.65 7.75 -51.93 -0.40 0.25 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.03 0.44 8.06 -51.93 -0.42 0.02 16 32 H 0.07 1.07 8.04 -51.93 -0.42 0.66 16 33 H 0.34 3.54 7.77 -39.29 -0.31 3.24 16 34 H 0.14 0.99 7.55 -51.93 -0.39 0.60 16 35 H 0.14 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.14 0.68 7.84 -51.93 -0.41 0.27 16 38 H 0.06 0.45 7.63 -51.93 -0.40 0.06 16 39 H 0.08 0.81 7.48 -51.93 -0.39 0.42 16 40 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 329.53 15.07 4.97 4.97 Total: -1.00 -34.26 329.53 -9.30 -43.56 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.78 Total: -2.12 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -0.10 Total: -24.04 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.37 Total: -33.67 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -2.10 Total: -25.03 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 20.66 SS G_CDS: -0.65 Total: 20.01 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.26 -9.30 -43.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308946256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.597 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds