Wall clock time and date at job start Mon Mar 30 2020 02:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.24825 * 2 1 4 4 C 1.52735 * 109.22133 * 119.44750 * 2 1 3 5 5 C 1.53326 * 108.38266 * 69.17841 * 4 2 1 6 6 C 1.52739 * 108.38352 * 69.88363 * 5 4 2 7 7 N 1.46501 * 109.25338 * 69.15224 * 6 5 4 8 8 C 1.36937 * 119.99997 * 180.02562 * 7 6 5 9 9 H 1.07991 * 120.00253 * 0.02562 * 8 7 6 10 10 C 1.38819 * 119.99932 * 179.97438 * 8 7 6 11 11 N 1.31624 * 119.99754 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99878 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46910 * 60.00302 * 12 10 8 14 14 H 1.48498 * 109.46756 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47196 * 300.00122 * 12 10 8 16 16 C 1.50693 * 109.25577 * 188.61915 * 6 5 4 17 17 O 1.20830 * 119.99866 * 25.00117 * 16 6 5 18 18 O 1.34236 * 120.00170 * 205.00235 * 16 6 5 19 19 C 1.50628 * 110.58564 * 308.90717 * 6 5 4 20 20 C 1.38919 * 117.75377 * 197.53898 * 19 6 5 21 21 C 1.37927 * 120.54843 * 180.35222 * 20 19 6 22 22 C 1.38266 * 119.77170 * 359.97438 * 21 20 19 23 23 C 1.37938 * 119.77068 * 359.84992 * 22 21 20 24 24 C 1.37658 * 122.56750 * 17.70777 * 19 6 5 25 25 H 1.09003 * 109.47134 * 179.46931 * 1 2 3 26 26 H 1.08998 * 109.47778 * 299.46831 * 1 2 3 27 27 H 1.09005 * 109.47334 * 59.47240 * 1 2 3 28 28 H 1.09003 * 109.68052 * 188.89761 * 4 2 1 29 29 H 1.09004 * 109.68459 * 309.41815 * 4 2 1 30 30 H 1.09004 * 109.68047 * 189.60514 * 5 4 2 31 31 H 1.08993 * 109.68283 * 310.12380 * 5 4 2 32 32 H 0.97008 * 120.00117 * 359.97438 * 7 6 5 33 33 H 0.97000 * 119.99526 * 180.02562 * 11 10 8 34 34 H 0.96699 * 116.99744 * 180.02562 * 18 16 6 35 35 H 1.08004 * 119.72397 * 0.37309 * 20 19 6 36 36 H 1.08004 * 120.11665 * 179.97438 * 21 20 19 37 37 H 1.07996 * 120.11310 * 179.89441 * 22 21 20 38 38 H 1.07995 * 119.72901 * 180.40005 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8893 1.0290 0.0000 4 6 2.0328 -0.7090 1.2559 5 6 1.7036 -2.2015 1.1331 6 6 2.5929 -2.8032 0.0468 7 7 3.9807 -2.8245 0.5155 8 6 4.9684 -3.3228 -0.2916 9 1 4.7244 -3.6996 -1.2737 10 6 6.2836 -3.3424 0.1524 11 7 6.5810 -2.8826 1.3493 12 14 7.6307 -4.0228 -0.9483 13 1 7.6882 -3.2343 -2.2053 14 1 8.9362 -3.9322 -0.2464 15 1 7.3387 -5.4432 -1.2679 16 6 2.1434 -4.2128 -0.2392 17 8 1.0028 -4.5409 -0.0124 18 8 3.0101 -5.1039 -0.7458 19 6 2.5089 -1.9889 -1.2176 20 6 2.9435 -2.5795 -2.3975 21 6 2.8991 -1.8836 -3.5875 22 6 2.4180 -0.5876 -3.6075 23 6 1.9826 -0.0005 -2.4376 24 6 2.0267 -0.6997 -1.2380 25 1 -0.3633 -1.0276 -0.0095 26 1 -0.3634 0.5055 0.8947 27 1 -0.3634 0.5220 -0.8852 28 1 3.1111 -0.5771 1.3451 29 1 1.5383 -0.2945 2.1344 30 1 1.8969 -2.6994 2.0833 31 1 0.6556 -2.3251 0.8605 32 1 4.2002 -2.4849 1.3973 33 1 7.5001 -2.8961 1.6593 34 1 2.6754 -5.9956 -0.9129 35 1 3.3188 -3.5921 -2.3828 36 1 3.2392 -2.3495 -4.5007 37 1 2.3824 -0.0370 -4.5359 38 1 1.6009 1.0096 -2.4551 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594322123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:45 Heat of formation + Delta-G solvation = -57.457478 kcal Electronic energy + Delta-G solvation = -22572.512460 eV Core-core repulsion = 19379.714054 eV Total energy + Delta-G solvation = -3192.798406 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.57638 -38.79579 -36.29477 -35.33409 -34.75612 -32.18625 -29.87096 -29.77593 -28.85194 -26.42400 -23.72049 -23.31072 -22.29386 -22.16843 -20.15386 -18.08975 -17.56197 -17.17956 -16.46564 -15.57711 -15.16221 -15.04271 -14.58079 -14.42131 -14.02947 -13.57071 -13.19290 -13.03948 -12.81548 -12.60975 -12.14473 -11.88147 -11.69219 -11.60325 -11.49965 -11.12479 -10.93250 -10.88210 -10.62716 -10.47218 -10.24548 -10.10204 -10.08878 -9.80685 -9.54537 -8.97647 -8.24322 -8.14480 -7.19069 -5.88293 -3.16231 1.83915 1.89328 2.97947 3.39987 3.45030 3.45948 3.83302 4.27321 4.52849 4.92904 5.02603 5.24502 5.30306 5.38522 5.43554 5.56458 5.58335 5.63946 5.71690 5.80479 5.85257 5.94452 5.97944 6.13733 6.19954 6.27999 6.37076 6.40789 6.42548 6.54676 6.61411 6.80045 6.94939 7.02555 7.17176 7.25397 7.50898 7.77300 8.24451 8.71256 9.41025 9.83598 10.22245 11.33050 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016546 B = 0.008179 C = 0.007577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.877120 B = 3422.475990 C = 3694.522414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 H 0.077 0.923 4 C -0.114 4.114 5 C -0.111 4.111 6 C 0.250 3.750 7 N -0.686 5.686 8 C -0.232 4.232 9 H 0.089 0.911 10 C -0.006 4.006 11 N -0.928 5.928 12 Si 0.908 3.092 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.283 1.283 16 C 0.473 3.527 17 O -0.549 6.549 18 O -0.483 6.483 19 C -0.061 4.061 20 C -0.100 4.100 21 C -0.131 4.131 22 C -0.126 4.126 23 C -0.129 4.129 24 C -0.059 4.059 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.393 0.607 33 H 0.258 0.742 34 H 0.377 0.623 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.926 4.334 -4.685 11.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 H 0.095 0.905 4 C -0.151 4.151 5 C -0.149 4.149 6 C 0.155 3.845 7 N -0.326 5.326 8 C -0.363 4.363 9 H 0.107 0.893 10 C -0.202 4.202 11 N -0.574 5.574 12 Si 0.739 3.261 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.210 1.210 16 C 0.314 3.686 17 O -0.439 6.439 18 O -0.291 6.291 19 C -0.064 4.064 20 C -0.119 4.119 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.147 4.147 24 C -0.060 4.060 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.229 0.771 33 H 0.067 0.933 34 H 0.234 0.766 35 H 0.149 0.851 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.892 4.561 -4.610 11.828 hybrid contribution 0.886 -0.925 -0.504 1.377 sum -9.006 3.636 -5.114 10.976 Atomic orbital electron populations 1.21903 0.94615 1.02315 1.01236 1.20011 0.95488 0.98823 0.92516 0.90503 1.21631 1.02655 0.94324 0.96516 1.21701 0.99665 0.95794 0.97719 1.18191 0.88564 0.86036 0.91748 1.42651 0.99380 1.72122 1.18466 1.19403 0.86407 1.31881 0.98582 0.89311 1.24797 0.97423 1.01203 0.96790 1.69659 1.18822 1.51190 1.17768 0.86250 0.81189 0.78967 0.79717 1.21062 1.21734 1.20984 1.25722 0.82381 0.89567 0.70897 1.90575 1.21322 1.80636 1.51384 1.85102 1.45051 1.23714 1.75194 1.19815 0.97712 0.94335 0.94509 1.21488 0.97366 1.01098 0.91923 1.20987 1.01009 0.95095 0.97789 1.20918 1.00428 0.95464 0.97669 1.20961 1.01923 0.99412 0.92395 1.19413 0.98578 0.93387 0.94623 0.92096 0.92559 0.92879 0.90146 0.91429 0.90960 0.89900 0.77084 0.93257 0.76624 0.85104 0.86720 0.86854 0.86834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.89 37.15 0.33 -1.45 16 2 C -0.05 -0.73 2.74 -91.94 -0.25 -0.98 16 3 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 4 C -0.11 -1.77 5.37 -26.70 -0.14 -1.91 16 5 C -0.11 -1.95 4.35 -26.70 -0.12 -2.07 16 6 C 0.25 5.09 0.72 -134.29 -0.10 4.99 16 7 N -0.69 -16.27 4.72 -49.55 -0.23 -16.50 16 8 C -0.23 -6.02 7.71 -15.06 -0.12 -6.14 16 9 H 0.09 2.25 4.36 -52.49 -0.23 2.02 16 10 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 11 N -0.93 -26.67 13.06 55.49 0.72 -25.95 16 12 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 C 0.47 9.79 6.36 36.00 0.23 10.02 16 17 O -0.55 -11.78 16.66 -18.75 -0.31 -12.09 16 18 O -0.48 -9.38 9.50 -39.27 -0.37 -9.75 16 19 C -0.06 -1.19 4.77 -104.62 -0.50 -1.69 16 20 C -0.10 -1.93 7.72 -39.44 -0.30 -2.24 16 21 C -0.13 -2.19 10.05 -39.68 -0.40 -2.59 16 22 C -0.13 -1.92 10.05 -39.68 -0.40 -2.32 16 23 C -0.13 -1.99 9.47 -39.44 -0.37 -2.36 16 24 C -0.06 -1.02 5.02 -104.62 -0.52 -1.54 16 25 H 0.06 0.82 6.47 -51.93 -0.34 0.49 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.60 8.07 -51.93 -0.42 0.18 16 28 H 0.08 1.44 7.21 -51.93 -0.37 1.06 16 29 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.41 5.68 -51.93 -0.29 1.12 16 32 H 0.39 9.81 7.10 -40.82 -0.29 9.52 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.38 5.42 9.10 45.56 0.41 5.84 16 35 H 0.13 2.61 4.76 -52.48 -0.25 2.36 16 36 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 37 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.11 1.45 8.05 -52.49 -0.42 1.02 16 LS Contribution 301.27 15.07 4.54 4.54 Total: -1.00 -30.74 301.27 -7.31 -38.05 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -3.87 Total: 15.40 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -2.76 Total: -10.53 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.49 Total: -42.45 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.69 Total: -21.85 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.74 -7.31 -38.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594322123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.411 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds