Wall clock time and date at job start Mon Mar 30 2020 02:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.25121 * 2 1 4 4 C 1.52736 * 109.25780 * 119.46887 * 2 1 3 5 5 C 1.53326 * 108.37352 * 171.35543 * 4 2 1 6 6 C 1.52734 * 108.38205 * 290.07932 * 5 4 2 7 7 N 1.46497 * 109.25343 * 290.77317 * 6 5 4 8 8 C 1.36937 * 120.00046 * 179.97438 * 7 6 5 9 9 H 1.07996 * 119.99734 * 0.02562 * 8 7 6 10 10 C 1.38815 * 119.99608 * 179.97438 * 8 7 6 11 11 N 1.31610 * 120.00430 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99665 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47145 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47378 * 119.99640 * 12 10 8 15 15 H 1.48504 * 109.46813 * 239.99930 * 12 10 8 16 16 C 1.50694 * 109.25439 * 171.34366 * 6 5 4 17 17 O 1.20828 * 120.00107 * 334.99746 * 16 6 5 18 18 O 1.34231 * 120.00160 * 155.00242 * 16 6 5 19 19 C 1.50638 * 110.58376 * 51.05718 * 6 5 4 20 20 C 1.38915 * 117.74613 * 162.53486 * 19 6 5 21 21 C 1.37929 * 120.54489 * 179.76062 * 20 19 6 22 22 C 1.38271 * 119.77271 * 0.02562 * 21 20 19 23 23 C 1.37927 * 119.76690 * 0.10234 * 22 21 20 24 24 C 1.37602 * 122.55812 * 342.43146 * 19 6 5 25 25 H 1.09002 * 109.47153 * 299.99743 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99915 * 1 2 3 28 28 H 1.08996 * 109.68711 * 291.08441 * 4 2 1 29 29 H 1.08999 * 109.67992 * 51.60307 * 4 2 1 30 30 H 1.09002 * 109.68361 * 49.80476 * 5 4 2 31 31 H 1.09003 * 109.68340 * 170.31751 * 5 4 2 32 32 H 0.97002 * 119.99960 * 0.02562 * 7 6 5 33 33 H 0.97001 * 120.00410 * 180.02562 * 11 10 8 34 34 H 0.96697 * 117.00547 * 180.02562 * 18 16 6 35 35 H 1.07998 * 119.72865 * 359.78119 * 20 19 6 36 36 H 1.08004 * 120.11384 * 179.97438 * 21 20 19 37 37 H 1.07997 * 120.11465 * 180.12244 * 22 21 20 38 38 H 1.08001 * 119.72442 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8894 1.0290 0.0000 4 6 2.0337 -0.7093 1.2553 5 6 3.5512 -0.8908 1.1319 6 6 3.8254 -1.9288 0.0455 7 7 3.3896 -3.2462 0.5152 8 6 3.5342 -4.3431 -0.2918 9 1 3.9698 -4.2369 -1.2743 10 6 3.1217 -5.5915 0.1535 11 7 2.5913 -5.7209 1.3510 12 14 3.3196 -7.0879 -0.9471 13 1 3.9374 -6.6778 -2.2338 14 1 4.1907 -8.0851 -0.2749 15 1 1.9874 -7.6901 -1.2078 16 6 5.3041 -1.9687 -0.2418 17 8 5.9898 -0.9998 -0.0158 18 8 5.8596 -3.0805 -0.7489 19 6 3.0829 -1.5814 -1.2183 20 6 3.4955 -2.1876 -2.3982 21 6 2.8534 -1.9150 -3.5881 22 6 1.7906 -1.0308 -3.6079 23 6 1.3812 -0.4259 -2.4379 24 6 2.0267 -0.6996 -1.2381 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8063 -0.1061 2.1342 29 1 1.5530 -1.6835 1.3444 30 1 4.0133 0.0578 0.8584 31 1 3.9581 -1.2368 2.0821 32 1 2.9980 -3.3415 1.3975 33 1 2.3035 -6.5933 1.6623 34 1 6.8117 -3.0586 -0.9161 35 1 4.3256 -2.8783 -2.3835 36 1 3.1803 -2.3900 -4.5013 37 1 1.2826 -0.8149 -4.5362 38 1 0.5507 0.2643 -2.4541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594322138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:48 Heat of formation + Delta-G solvation = -57.536379 kcal Electronic energy + Delta-G solvation = -22525.136092 eV Core-core repulsion = 19332.334264 eV Total energy + Delta-G solvation = -3192.801828 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.54442 -38.81043 -36.19332 -35.33801 -34.81222 -32.32847 -29.90265 -29.76176 -29.03884 -26.33438 -23.59439 -23.02319 -22.40760 -22.09428 -20.04702 -18.50837 -17.55542 -17.16096 -16.52064 -15.56473 -15.35729 -15.02161 -14.56009 -14.30184 -13.74246 -13.59284 -13.39565 -13.05067 -12.73447 -12.54706 -12.16839 -11.99241 -11.62963 -11.46677 -11.39185 -11.21895 -10.96495 -10.81766 -10.64766 -10.60461 -10.30701 -10.06950 -10.05981 -9.79616 -9.54348 -8.98727 -8.24092 -8.13599 -7.19149 -5.88788 -3.16652 1.84104 1.89588 2.97871 3.38127 3.45663 3.47384 3.83182 4.27489 4.52552 4.93720 5.01478 5.18123 5.33161 5.34711 5.46796 5.56486 5.59039 5.64093 5.72411 5.78934 5.83823 5.98675 6.01584 6.08940 6.23373 6.27098 6.35756 6.41252 6.46708 6.55257 6.58759 6.78966 6.95443 7.02695 7.17043 7.25200 7.51051 7.78152 8.23887 8.71180 9.40750 9.83323 10.21950 11.32711 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.008235 C = 0.007925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.242186 B = 3399.449828 C = 3532.416587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 H 0.077 0.923 4 C -0.113 4.113 5 C -0.110 4.110 6 C 0.250 3.750 7 N -0.687 5.687 8 C -0.231 4.231 9 H 0.091 0.909 10 C -0.006 4.006 11 N -0.927 5.927 12 Si 0.908 3.092 13 H -0.277 1.277 14 H -0.291 1.291 15 H -0.292 1.292 16 C 0.474 3.526 17 O -0.549 6.549 18 O -0.483 6.483 19 C -0.062 4.062 20 C -0.100 4.100 21 C -0.131 4.131 22 C -0.127 4.127 23 C -0.131 4.131 24 C -0.060 4.060 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.393 0.607 33 H 0.256 0.744 34 H 0.378 0.622 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.498 10.401 -4.721 11.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 H 0.095 0.905 4 C -0.151 4.151 5 C -0.148 4.148 6 C 0.154 3.846 7 N -0.326 5.326 8 C -0.361 4.361 9 H 0.108 0.892 10 C -0.202 4.202 11 N -0.574 5.574 12 Si 0.738 3.262 13 H -0.202 1.202 14 H -0.218 1.218 15 H -0.219 1.219 16 C 0.314 3.686 17 O -0.439 6.439 18 O -0.291 6.291 19 C -0.065 4.065 20 C -0.118 4.118 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.149 4.149 24 C -0.061 4.061 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.229 0.771 33 H 0.066 0.934 34 H 0.234 0.766 35 H 0.149 0.851 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.721 10.450 -4.661 11.571 hybrid contribution 0.609 -1.138 -0.474 1.375 sum -1.112 9.312 -5.135 10.692 Atomic orbital electron populations 1.21894 0.94583 1.02439 1.01163 1.20012 0.95628 0.98629 0.92546 0.90516 1.21653 0.95046 1.01886 0.96479 1.21653 0.96821 0.98507 0.97783 1.18194 0.85231 0.89393 0.91739 1.42659 1.71435 1.00142 1.18398 1.19503 1.32777 0.85288 0.98558 0.89174 1.24790 1.00907 0.97769 0.96775 1.69670 1.46535 1.23494 1.17716 0.86109 0.77226 0.82981 0.79839 1.20222 1.21823 1.21883 1.25710 0.93151 0.78787 0.70904 1.90577 1.64810 1.37123 1.51406 1.85098 1.28078 1.40706 1.75175 1.19803 0.96622 0.95530 0.94520 1.21488 1.00494 0.97935 0.91905 1.20990 0.97089 0.99065 0.97784 1.20930 0.97652 0.98231 0.97684 1.21043 1.00256 1.01258 0.92312 1.19443 0.95255 0.96778 0.94626 0.92670 0.92084 0.92679 0.91494 0.90030 0.90209 0.90842 0.77098 0.93365 0.76616 0.85083 0.86739 0.86867 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.70 37.16 0.32 -1.49 16 2 C -0.05 -0.73 2.77 -91.94 -0.25 -0.98 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.11 -1.76 5.21 -26.70 -0.14 -1.90 16 5 C -0.11 -1.93 4.39 -26.70 -0.12 -2.05 16 6 C 0.25 5.09 0.72 -134.29 -0.10 4.99 16 7 N -0.69 -16.24 4.72 -49.55 -0.23 -16.47 16 8 C -0.23 -5.97 7.71 -15.06 -0.12 -6.09 16 9 H 0.09 2.29 4.35 -52.49 -0.23 2.06 16 10 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 11 N -0.93 -26.63 13.06 55.49 0.72 -25.91 16 12 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 C 0.47 9.79 6.36 36.00 0.23 10.02 16 17 O -0.55 -11.82 16.65 -18.75 -0.31 -12.13 16 18 O -0.48 -9.36 9.50 -39.26 -0.37 -9.73 16 19 C -0.06 -1.21 4.77 -104.63 -0.50 -1.71 16 20 C -0.10 -1.93 7.72 -39.44 -0.30 -2.23 16 21 C -0.13 -2.19 10.05 -39.68 -0.40 -2.59 16 22 C -0.13 -1.92 10.05 -39.68 -0.40 -2.32 16 23 C -0.13 -2.01 9.04 -39.43 -0.36 -2.37 16 24 C -0.06 -1.04 5.42 -104.61 -0.57 -1.60 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.61 6.38 -51.93 -0.33 0.28 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.46 7.21 -51.93 -0.37 1.08 16 30 H 0.08 1.36 7.50 -51.93 -0.39 0.97 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.39 9.79 7.11 -40.82 -0.29 9.50 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.38 5.40 9.10 45.56 0.41 5.81 16 35 H 0.13 2.63 4.75 -52.49 -0.25 2.38 16 36 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 37 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 38 H 0.12 1.48 6.33 -52.49 -0.33 1.15 16 LS Contribution 301.09 15.07 4.54 4.54 Total: -1.00 -30.77 301.09 -7.35 -38.12 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -3.88 Total: 15.31 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -2.79 Total: -10.57 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.49 Total: -42.38 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.69 Total: -21.86 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.77 -7.35 -38.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594322138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.418 kcal (2) G-P(sol) polarization free energy of solvation -30.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds