Wall clock time and date at job start Mon Mar 30 2020 02:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.25121 * 2 1 4 4 C 1.52736 * 109.25780 * 119.46887 * 2 1 3 5 5 C 1.53326 * 108.37352 * 171.35543 * 4 2 1 6 6 C 1.52734 * 108.38205 * 290.07932 * 5 4 2 7 7 N 1.46497 * 109.25343 * 290.77317 * 6 5 4 8 8 C 1.36937 * 120.00046 * 179.97438 * 7 6 5 9 9 H 1.07996 * 119.99734 * 0.02562 * 8 7 6 10 10 C 1.38815 * 119.99608 * 179.97438 * 8 7 6 11 11 N 1.31610 * 120.00430 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99665 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47145 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47378 * 119.99640 * 12 10 8 15 15 H 1.48504 * 109.46813 * 239.99930 * 12 10 8 16 16 C 1.50694 * 109.25439 * 171.34366 * 6 5 4 17 17 O 1.20828 * 120.00107 * 334.99746 * 16 6 5 18 18 O 1.34231 * 120.00160 * 155.00242 * 16 6 5 19 19 C 1.50638 * 110.58376 * 51.05718 * 6 5 4 20 20 C 1.38915 * 117.74613 * 162.53486 * 19 6 5 21 21 C 1.37929 * 120.54489 * 179.76062 * 20 19 6 22 22 C 1.38271 * 119.77271 * 0.02562 * 21 20 19 23 23 C 1.37927 * 119.76690 * 0.10234 * 22 21 20 24 24 C 1.37602 * 122.55812 * 342.43146 * 19 6 5 25 25 H 1.09002 * 109.47153 * 299.99743 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99915 * 1 2 3 28 28 H 1.08996 * 109.68711 * 291.08441 * 4 2 1 29 29 H 1.08999 * 109.67992 * 51.60307 * 4 2 1 30 30 H 1.09002 * 109.68361 * 49.80476 * 5 4 2 31 31 H 1.09003 * 109.68340 * 170.31751 * 5 4 2 32 32 H 0.97002 * 119.99960 * 0.02562 * 7 6 5 33 33 H 0.97001 * 120.00410 * 180.02562 * 11 10 8 34 34 H 0.96697 * 117.00547 * 180.02562 * 18 16 6 35 35 H 1.07998 * 119.72865 * 359.78119 * 20 19 6 36 36 H 1.08004 * 120.11384 * 179.97438 * 21 20 19 37 37 H 1.07997 * 120.11465 * 180.12244 * 22 21 20 38 38 H 1.08001 * 119.72442 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8894 1.0290 0.0000 4 6 2.0337 -0.7093 1.2553 5 6 3.5512 -0.8908 1.1319 6 6 3.8254 -1.9288 0.0455 7 7 3.3896 -3.2462 0.5152 8 6 3.5342 -4.3431 -0.2918 9 1 3.9698 -4.2369 -1.2743 10 6 3.1217 -5.5915 0.1535 11 7 2.5913 -5.7209 1.3510 12 14 3.3196 -7.0879 -0.9471 13 1 3.9374 -6.6778 -2.2338 14 1 4.1907 -8.0851 -0.2749 15 1 1.9874 -7.6901 -1.2078 16 6 5.3041 -1.9687 -0.2418 17 8 5.9898 -0.9998 -0.0158 18 8 5.8596 -3.0805 -0.7489 19 6 3.0829 -1.5814 -1.2183 20 6 3.4955 -2.1876 -2.3982 21 6 2.8534 -1.9150 -3.5881 22 6 1.7906 -1.0308 -3.6079 23 6 1.3812 -0.4259 -2.4379 24 6 2.0267 -0.6996 -1.2381 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8063 -0.1061 2.1342 29 1 1.5530 -1.6835 1.3444 30 1 4.0133 0.0578 0.8584 31 1 3.9581 -1.2368 2.0821 32 1 2.9980 -3.3415 1.3975 33 1 2.3035 -6.5933 1.6623 34 1 6.8117 -3.0586 -0.9161 35 1 4.3256 -2.8783 -2.3835 36 1 3.1803 -2.3900 -4.5013 37 1 1.2826 -0.8149 -4.5362 38 1 0.5507 0.2643 -2.4541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594322138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:47 Heat of formation + Delta-G solvation = -76.710930 kcal Electronic energy + Delta-G solvation = -22525.967563 eV Core-core repulsion = 19332.334264 eV Total energy + Delta-G solvation = -3193.633299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.03095 -40.28652 -37.58196 -37.01504 -36.27338 -34.09254 -31.40789 -31.17990 -30.37163 -27.80258 -25.47742 -24.35135 -23.73256 -23.48431 -21.43259 -19.93456 -19.28914 -18.92007 -17.95162 -17.26459 -16.67623 -16.44381 -16.08449 -15.91991 -15.32309 -15.15802 -14.56709 -14.46206 -14.26050 -14.10587 -13.48022 -13.30588 -13.02449 -12.91230 -12.87758 -12.62701 -12.53764 -12.38203 -12.25685 -11.99601 -11.91125 -11.76076 -11.60730 -11.22797 -11.13254 -10.83804 -9.59056 -9.43664 -9.10175 -7.92443 -5.20669 0.52580 0.59071 1.32024 1.46896 1.48187 1.56958 2.33348 2.56590 2.96539 3.47693 3.65221 3.74045 3.83026 4.03631 4.07883 4.15320 4.29568 4.32995 4.50014 4.56212 4.63139 4.76375 4.79056 4.88425 4.94719 4.96886 5.16006 5.18219 5.24656 5.33495 5.37161 5.55008 5.65455 5.68709 5.71227 5.76384 5.87053 6.22407 6.26457 7.15307 7.37064 7.93359 8.24095 9.30430 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.008235 C = 0.007925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.242186 B = 3399.449828 C = 3532.416587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 H 0.099 0.901 4 C -0.107 4.107 5 C -0.108 4.108 6 C 0.245 3.755 7 N -0.699 5.699 8 C -0.210 4.210 9 H 0.093 0.907 10 C -0.069 4.069 11 N -0.966 5.966 12 Si 0.959 3.041 13 H -0.266 1.266 14 H -0.297 1.297 15 H -0.298 1.298 16 C 0.476 3.524 17 O -0.560 6.560 18 O -0.492 6.492 19 C -0.091 4.091 20 C -0.127 4.127 21 C -0.140 4.140 22 C -0.121 4.121 23 C -0.129 4.129 24 C -0.072 4.072 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.382 0.618 33 H 0.249 0.751 34 H 0.401 0.599 35 H 0.113 0.887 36 H 0.134 0.866 37 H 0.150 0.850 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.455 12.546 -6.329 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.068 4.068 3 H 0.117 0.883 4 C -0.144 4.144 5 C -0.146 4.146 6 C 0.151 3.849 7 N -0.338 5.338 8 C -0.341 4.341 9 H 0.111 0.889 10 C -0.261 4.261 11 N -0.617 5.617 12 Si 0.790 3.210 13 H -0.190 1.190 14 H -0.224 1.224 15 H -0.226 1.226 16 C 0.318 3.682 17 O -0.452 6.452 18 O -0.302 6.302 19 C -0.093 4.093 20 C -0.146 4.146 21 C -0.158 4.158 22 C -0.139 4.139 23 C -0.147 4.147 24 C -0.073 4.073 25 H 0.094 0.906 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.217 0.783 33 H 0.058 0.942 34 H 0.261 0.739 35 H 0.131 0.869 36 H 0.152 0.848 37 H 0.168 0.832 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.643 12.634 -6.318 14.370 hybrid contribution 0.997 -1.638 -0.081 1.919 sum -1.646 10.995 -6.399 12.828 Atomic orbital electron populations 1.21857 0.92833 1.01574 1.03243 1.20108 0.96986 0.99069 0.90627 0.88301 1.21614 0.93061 1.01134 0.98636 1.21675 0.98599 0.97770 0.96508 1.18491 0.84529 0.88512 0.93370 1.42694 1.71961 1.01257 1.17884 1.19739 1.30254 0.85822 0.98327 0.88908 1.25426 1.02497 1.00126 0.98061 1.69799 1.49297 1.23244 1.19358 0.85268 0.76582 0.80303 0.78865 1.19008 1.22425 1.22553 1.25493 0.93300 0.78796 0.70655 1.90563 1.65079 1.37466 1.52056 1.84987 1.30159 1.40205 1.74853 1.19808 0.98012 0.97615 0.93895 1.21523 1.01092 0.98683 0.93279 1.21289 0.97422 0.99507 0.97571 1.21393 0.96593 0.96640 0.99238 1.21468 1.00509 1.01179 0.91522 1.19859 0.94491 0.96263 0.96659 0.90610 0.94354 0.90654 0.88558 0.92914 0.89532 0.91551 0.78311 0.94226 0.73944 0.86893 0.84763 0.83223 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.70 71.98 0.63 -2.40 16 2 C -0.05 -1.32 2.77 -11.65 -0.03 -1.35 16 3 H 0.10 2.21 8.14 -2.39 -0.02 2.20 16 4 C -0.11 -3.19 5.21 30.62 0.16 -3.03 16 5 C -0.11 -3.75 4.39 30.61 0.13 -3.61 16 6 C 0.24 10.01 0.72 2.00 0.00 10.01 16 7 N -0.70 -33.87 4.72 -310.69 -1.47 -35.34 16 8 C -0.21 -11.08 7.71 84.03 0.65 -10.43 16 9 H 0.09 4.78 4.35 -2.91 -0.01 4.77 16 10 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 11 N -0.97 -57.48 13.06 21.65 0.28 -57.20 16 12 Si 0.96 45.90 29.55 68.60 2.03 47.93 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 15 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 16 C 0.48 19.74 6.36 71.23 0.45 20.20 16 17 O -0.56 -23.95 16.65 21.96 0.37 -23.59 16 18 O -0.49 -19.15 9.50 -51.42 -0.49 -19.64 16 19 C -0.09 -3.50 4.77 -19.87 -0.09 -3.60 16 20 C -0.13 -4.86 7.72 22.36 0.17 -4.68 16 21 C -0.14 -4.40 10.05 22.20 0.22 -4.18 16 22 C -0.12 -3.22 10.05 22.20 0.22 -3.00 16 23 C -0.13 -3.50 9.04 22.37 0.20 -3.30 16 24 C -0.07 -2.32 5.42 -19.86 -0.11 -2.43 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.33 6.38 -2.38 -0.02 1.32 16 28 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.05 1.90 7.21 -2.39 -0.02 1.88 16 30 H 0.09 2.87 7.50 -2.39 -0.02 2.85 16 31 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.38 19.83 7.11 -92.71 -0.66 19.18 16 33 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 34 H 0.40 11.32 9.10 -74.06 -0.67 10.65 16 35 H 0.11 4.59 4.75 -2.91 -0.01 4.58 16 36 H 0.13 3.55 8.06 -2.91 -0.02 3.52 16 37 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.15 3.02 6.33 -2.91 -0.02 3.00 16 Total: -1.00 -67.73 301.09 3.57 -64.16 By element: Atomic # 1 Polarization: 39.11 SS G_CDS: -0.22 Total: 38.89 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 3.08 Total: -15.21 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -1.18 Total: -92.54 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -0.12 Total: -43.23 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -67.73 3.57 -64.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594322138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.552 kcal (2) G-P(sol) polarization free energy of solvation -67.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds