Wall clock time and date at job start Mon Mar 30 2020 02:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47245 * 2 1 4 4 N 1.46505 * 109.47353 * 239.99851 * 2 1 3 5 5 S 1.65604 * 119.99844 * 94.99877 * 4 2 1 6 6 O 1.42094 * 104.27553 * 181.07515 * 5 4 2 7 7 O 1.42099 * 104.27749 * 308.93385 * 5 4 2 8 8 C 1.81401 * 104.44669 * 65.00357 * 5 4 2 9 9 C 1.53001 * 109.47197 * 180.02562 * 8 5 4 10 10 C 1.52996 * 109.47342 * 179.97438 * 9 8 5 11 11 C 1.50700 * 109.47404 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99631 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00333 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99868 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00230 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46805 * 60.00383 * 15 13 11 17 17 H 1.48501 * 109.47051 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46928 * 300.00196 * 15 13 11 19 19 C 1.53004 * 109.46842 * 120.00434 * 2 1 3 20 20 C 1.52997 * 115.55181 * 85.58322 * 19 2 1 21 21 C 1.53003 * 117.51219 * 231.28447 * 19 2 1 22 22 C 1.52993 * 117.49560 * 299.91015 * 19 2 1 23 23 H 1.08995 * 109.47234 * 300.00113 * 1 2 3 24 24 H 1.09000 * 109.47291 * 59.99976 * 1 2 3 25 25 H 1.09008 * 109.47278 * 179.97438 * 1 2 3 26 26 H 0.96996 * 119.99918 * 275.00625 * 4 2 1 27 27 H 1.09004 * 109.46849 * 300.00069 * 8 5 4 28 28 H 1.08997 * 109.47362 * 59.99551 * 8 5 4 29 29 H 1.09002 * 109.46599 * 300.00124 * 9 8 5 30 30 H 1.09004 * 109.47170 * 59.99925 * 9 8 5 31 31 H 1.09005 * 109.47339 * 300.00199 * 10 9 8 32 32 H 1.09004 * 109.47004 * 59.99878 * 10 9 8 33 33 H 0.96997 * 120.00155 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.47153 * 299.91015 * 20 19 2 35 35 H 1.09001 * 109.46832 * 179.91206 * 20 19 2 36 36 H 1.09004 * 109.47261 * 59.91187 * 20 19 2 37 37 H 1.09000 * 117.49553 * 214.96932 * 21 19 2 38 38 H 1.09000 * 117.50386 * 359.97438 * 21 19 2 39 39 H 1.09001 * 117.50068 * 359.97438 * 22 19 2 40 40 H 1.09005 * 117.50009 * 145.00168 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 16 2.4122 0.1772 -2.5505 6 8 2.8122 -0.8076 -3.4936 7 8 1.2752 0.9966 -2.7846 8 6 3.8313 1.1872 -2.0440 9 6 4.2935 2.0453 -3.2234 10 6 5.4900 2.8977 -2.7961 11 6 5.9456 3.7424 -3.9579 12 1 5.4332 3.6775 -4.9064 13 6 7.0164 4.5981 -3.8101 14 7 7.6407 4.6768 -2.6552 15 14 7.5816 5.6447 -5.2504 16 1 6.4716 6.5308 -5.6840 17 1 8.7429 6.4721 -4.8356 18 1 7.9799 4.7628 -6.3768 19 6 2.0399 -0.7214 1.2492 20 6 2.1596 -2.2420 1.1305 21 6 3.0757 0.0038 2.1108 22 6 1.6373 -0.1485 2.6095 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 2.1109 -1.6562 -1.1949 27 1 3.5399 1.8342 -1.2166 28 1 4.6459 0.5362 -1.7267 29 1 4.5847 1.3986 -4.0511 30 1 3.4787 2.6964 -3.5403 31 1 5.1984 3.5444 -1.9685 32 1 6.3049 2.2469 -2.4789 33 1 8.3943 5.2786 -2.5512 34 1 1.1805 -2.6675 0.9102 35 1 2.5307 -2.6517 2.0700 36 1 2.8529 -2.4903 0.3268 37 1 3.8424 -0.6026 2.5931 38 1 3.3943 0.9948 1.7876 39 1 1.0095 0.7426 2.6145 40 1 1.4577 -0.8549 3.4200 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665937809.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:42 Heat of formation + Delta-G solvation = -73.668139 kcal Electronic energy + Delta-G solvation = -19849.465526 eV Core-core repulsion = 16791.408124 eV Total energy + Delta-G solvation = -3058.057402 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.18966 -36.85738 -35.73356 -34.73028 -34.65902 -32.18453 -29.70051 -28.76005 -27.80021 -23.87057 -23.69252 -22.45252 -20.67822 -19.37505 -19.18276 -17.50763 -16.74244 -16.54867 -15.68914 -15.47930 -14.72901 -14.48865 -14.48729 -14.08304 -13.94773 -13.15260 -12.71100 -12.66006 -12.56278 -12.28139 -12.21765 -11.92203 -11.81288 -11.75913 -11.72591 -11.51312 -11.22971 -10.97254 -10.88860 -10.84207 -10.62171 -10.38680 -10.05160 -9.94329 -9.60673 -9.31184 -9.07628 -8.40232 -6.05434 -4.08548 0.49422 2.84361 3.32420 3.36201 3.39475 3.50945 3.95385 4.31369 4.41299 4.42873 4.55960 4.68206 4.69454 4.89494 5.14023 5.16729 5.22760 5.30859 5.35277 5.44472 5.48799 5.57853 5.64634 5.71727 5.75404 5.89112 5.91533 5.93287 6.10732 6.20157 6.27269 6.45539 6.87248 6.94877 7.56828 7.67021 7.92455 8.33077 8.97443 9.56150 11.05768 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.023803 B = 0.004184 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.033108 B = 6691.221815 C = 7359.278233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.189 3.811 3 H 0.085 0.915 4 N -1.118 6.118 5 S 2.599 3.401 6 O -0.965 6.965 7 O -0.961 6.961 8 C -0.609 4.609 9 C -0.106 4.106 10 C 0.031 3.969 11 C -0.527 4.527 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.896 5.896 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.137 4.137 20 C -0.116 4.116 21 C -0.174 4.174 22 C -0.169 4.169 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.414 0.586 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.262 0.738 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.253 -12.329 11.133 20.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.081 3.919 3 H 0.103 0.897 4 N -0.876 5.876 5 S 2.695 3.305 6 O -0.955 6.955 7 O -0.951 6.951 8 C -0.741 4.741 9 C -0.145 4.145 10 C -0.007 4.007 11 C -0.565 4.565 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.535 5.535 15 Si 0.722 3.278 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.138 4.138 20 C -0.174 4.174 21 C -0.211 4.211 22 C -0.206 4.206 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.249 0.751 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.603 -12.119 10.381 20.334 hybrid contribution 0.986 0.403 -0.064 1.067 sum -11.617 -11.716 10.316 19.459 Atomic orbital electron populations 1.22286 0.94596 1.02697 1.03093 1.20207 0.94460 0.94663 0.82557 0.89740 1.55857 1.82389 1.19441 1.29905 1.05346 0.76874 0.75059 0.73260 1.93573 1.84631 1.58238 1.59092 1.93568 1.47306 1.70539 1.83653 1.30550 1.18764 1.14057 1.10699 1.21498 1.02044 0.97787 0.93181 1.19054 0.90827 0.93874 0.96958 1.21218 1.14693 1.22918 0.97697 0.92429 1.25011 0.96389 0.97021 0.95888 1.69947 1.21786 1.38063 1.23666 0.86615 0.78194 0.80331 0.82645 1.20113 1.21242 1.20118 1.21700 1.04734 0.95675 0.91698 1.21284 1.02023 0.91902 1.02159 1.23203 0.92475 1.02195 1.03261 1.23044 0.98354 1.03083 0.96137 0.91640 0.90748 0.92167 0.75087 0.85706 0.85254 0.91600 0.91589 0.96158 0.96136 0.92852 0.91931 0.92192 0.91725 0.88570 0.88263 0.88475 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 9.36 37.16 0.35 -1.26 16 2 C 0.19 1.88 2.77 -67.93 -0.19 1.69 16 3 H 0.08 0.83 6.91 -51.93 -0.36 0.47 16 4 N -1.12 -12.24 5.26 -4.89 -0.03 -12.27 16 5 S 2.60 38.35 5.38 -107.50 -0.58 37.77 16 6 O -0.96 -17.11 18.08 -57.54 -1.04 -18.15 16 7 O -0.96 -16.70 17.11 -57.54 -0.98 -17.68 16 8 C -0.61 -9.40 5.96 37.16 0.22 -9.18 16 9 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 10 C 0.03 0.79 4.97 -27.89 -0.14 0.65 16 11 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 12 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 15 Si 0.89 21.61 29.54 -169.99 -5.02 16.58 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C -0.14 -1.15 2.01 -154.51 -0.31 -1.46 16 20 C -0.12 -0.86 8.81 37.16 0.33 -0.53 16 21 C -0.17 -1.48 9.89 -26.73 -0.26 -1.74 16 22 C -0.17 -1.25 9.44 -26.74 -0.25 -1.51 16 23 H 0.06 0.52 7.29 -51.93 -0.38 0.14 16 24 H 0.07 0.85 7.42 -51.93 -0.39 0.47 16 25 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 26 H 0.41 3.85 6.69 -34.48 -0.23 3.61 16 27 H 0.12 1.70 7.44 -51.92 -0.39 1.32 16 28 H 0.13 1.81 8.14 -51.93 -0.42 1.38 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.40 8.11 -51.93 -0.42 -0.03 16 36 H 0.06 0.47 6.90 -51.93 -0.36 0.11 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 0.89 8.05 -51.93 -0.42 0.47 16 39 H 0.10 0.68 7.61 -51.93 -0.40 0.29 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 338.67 15.07 5.10 5.10 Total: -1.00 -34.10 338.67 -9.30 -43.40 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.68 Total: 0.34 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: -0.81 Total: -29.25 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.71 Total: -38.11 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -2.02 Total: -35.84 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 38.35 SS G_CDS: -0.58 Total: 37.77 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.10 -9.30 -43.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665937809.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.269 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds