Wall clock time and date at job start Mon Mar 30 2020 02:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47245 * 2 1 4 4 N 1.46505 * 109.47353 * 239.99851 * 2 1 3 5 5 S 1.65604 * 119.99844 * 94.99877 * 4 2 1 6 6 O 1.42094 * 104.27553 * 181.07515 * 5 4 2 7 7 O 1.42099 * 104.27749 * 308.93385 * 5 4 2 8 8 C 1.81401 * 104.44669 * 65.00357 * 5 4 2 9 9 C 1.53001 * 109.47197 * 180.02562 * 8 5 4 10 10 C 1.52996 * 109.47342 * 179.97438 * 9 8 5 11 11 C 1.50700 * 109.47404 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99631 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00333 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99868 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00230 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46805 * 60.00383 * 15 13 11 17 17 H 1.48501 * 109.47051 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46928 * 300.00196 * 15 13 11 19 19 C 1.53004 * 109.46842 * 120.00434 * 2 1 3 20 20 C 1.52997 * 115.55181 * 85.58322 * 19 2 1 21 21 C 1.53003 * 117.51219 * 231.28447 * 19 2 1 22 22 C 1.52993 * 117.49560 * 299.91015 * 19 2 1 23 23 H 1.08995 * 109.47234 * 300.00113 * 1 2 3 24 24 H 1.09000 * 109.47291 * 59.99976 * 1 2 3 25 25 H 1.09008 * 109.47278 * 179.97438 * 1 2 3 26 26 H 0.96996 * 119.99918 * 275.00625 * 4 2 1 27 27 H 1.09004 * 109.46849 * 300.00069 * 8 5 4 28 28 H 1.08997 * 109.47362 * 59.99551 * 8 5 4 29 29 H 1.09002 * 109.46599 * 300.00124 * 9 8 5 30 30 H 1.09004 * 109.47170 * 59.99925 * 9 8 5 31 31 H 1.09005 * 109.47339 * 300.00199 * 10 9 8 32 32 H 1.09004 * 109.47004 * 59.99878 * 10 9 8 33 33 H 0.96997 * 120.00155 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.47153 * 299.91015 * 20 19 2 35 35 H 1.09001 * 109.46832 * 179.91206 * 20 19 2 36 36 H 1.09004 * 109.47261 * 59.91187 * 20 19 2 37 37 H 1.09000 * 117.49553 * 214.96932 * 21 19 2 38 38 H 1.09000 * 117.50386 * 359.97438 * 21 19 2 39 39 H 1.09001 * 117.50068 * 359.97438 * 22 19 2 40 40 H 1.09005 * 117.50009 * 145.00168 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 16 2.4122 0.1772 -2.5505 6 8 2.8122 -0.8076 -3.4936 7 8 1.2752 0.9966 -2.7846 8 6 3.8313 1.1872 -2.0440 9 6 4.2935 2.0453 -3.2234 10 6 5.4900 2.8977 -2.7961 11 6 5.9456 3.7424 -3.9579 12 1 5.4332 3.6775 -4.9064 13 6 7.0164 4.5981 -3.8101 14 7 7.6407 4.6768 -2.6552 15 14 7.5816 5.6447 -5.2504 16 1 6.4716 6.5308 -5.6840 17 1 8.7429 6.4721 -4.8356 18 1 7.9799 4.7628 -6.3768 19 6 2.0399 -0.7214 1.2492 20 6 2.1596 -2.2420 1.1305 21 6 3.0757 0.0038 2.1108 22 6 1.6373 -0.1485 2.6095 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 2.1109 -1.6562 -1.1949 27 1 3.5399 1.8342 -1.2166 28 1 4.6459 0.5362 -1.7267 29 1 4.5847 1.3986 -4.0511 30 1 3.4787 2.6964 -3.5403 31 1 5.1984 3.5444 -1.9685 32 1 6.3049 2.2469 -2.4789 33 1 8.3943 5.2786 -2.5512 34 1 1.1805 -2.6675 0.9102 35 1 2.5307 -2.6517 2.0700 36 1 2.8529 -2.4903 0.3268 37 1 3.8424 -0.6026 2.5931 38 1 3.3943 0.9948 1.7876 39 1 1.0095 0.7426 2.6145 40 1 1.4577 -0.8549 3.4200 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665937809.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:41 Heat of formation + Delta-G solvation = -96.908022 kcal Electronic energy + Delta-G solvation = -19850.473283 eV Core-core repulsion = 16791.408124 eV Total energy + Delta-G solvation = -3059.065159 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.88672 -38.17152 -37.05652 -36.47653 -35.55925 -34.17094 -30.53046 -29.68258 -29.31868 -25.63294 -24.59133 -23.06886 -22.44282 -20.36396 -20.12280 -18.72018 -18.50237 -17.57897 -17.15193 -16.68933 -16.47486 -15.76980 -15.43611 -15.09290 -14.66274 -14.49019 -14.09253 -13.96146 -13.55560 -13.43061 -13.28920 -13.17892 -13.07802 -12.98682 -12.90125 -12.73916 -12.67983 -12.60267 -12.19262 -12.14391 -11.78564 -11.65208 -11.41985 -11.32175 -11.01670 -10.69256 -10.57262 -10.25021 -8.22751 -6.33959 -0.73830 1.40220 1.42784 1.50723 1.76192 2.39824 2.72529 2.88903 3.10787 3.22418 3.62260 3.72469 3.88282 3.91328 4.02323 4.07563 4.19702 4.38225 4.46306 4.54831 4.64818 4.86026 4.91397 4.92729 4.94201 5.01063 5.05065 5.10213 5.14152 5.25265 5.33082 5.38517 5.44484 5.49496 5.61992 5.78786 6.11399 6.19295 6.81286 7.35436 8.88555 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.023803 B = 0.004184 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.033108 B = 6691.221815 C = 7359.278233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.179 3.821 3 H 0.084 0.916 4 N -1.102 6.102 5 S 2.628 3.372 6 O -0.993 6.993 7 O -0.985 6.985 8 C -0.610 4.610 9 C -0.106 4.106 10 C 0.032 3.968 11 C -0.554 4.554 12 H 0.060 0.940 13 C 0.004 3.996 14 N -0.930 5.930 15 Si 0.963 3.037 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.268 1.268 19 C -0.139 4.139 20 C -0.119 4.119 21 C -0.187 4.187 22 C -0.157 4.157 23 H 0.082 0.918 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.424 0.576 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.003 0.997 32 H 0.002 0.998 33 H 0.265 0.735 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.917 -12.894 11.619 21.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.072 3.928 3 H 0.102 0.898 4 N -0.864 5.864 5 S 2.723 3.277 6 O -0.984 6.984 7 O -0.975 6.975 8 C -0.741 4.741 9 C -0.145 4.145 10 C -0.006 4.006 11 C -0.592 4.592 12 H 0.078 0.922 13 C -0.194 4.194 14 N -0.569 5.569 15 Si 0.787 3.213 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.141 4.141 20 C -0.176 4.176 21 C -0.224 4.224 22 C -0.195 4.195 23 H 0.101 0.899 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.262 0.738 27 H 0.160 0.840 28 H 0.163 0.837 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.022 0.978 32 H 0.020 0.980 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.268 -12.692 10.860 21.333 hybrid contribution 1.168 0.555 -0.132 1.300 sum -12.100 -12.137 10.729 20.220 Atomic orbital electron populations 1.22283 0.94115 1.03336 1.02911 1.20436 0.94929 0.94862 0.82596 0.89806 1.55478 1.81802 1.19773 1.29350 1.04271 0.75860 0.74275 0.73289 1.93530 1.84926 1.58991 1.60922 1.93538 1.48121 1.71432 1.84429 1.30512 1.19972 1.14241 1.09327 1.21311 1.00164 0.97922 0.95125 1.18951 0.92213 0.93749 0.95723 1.21711 1.15173 1.23668 0.98671 0.92187 1.25921 0.96457 0.98314 0.98721 1.70063 1.22289 1.38886 1.25698 0.85538 0.77944 0.78636 0.79195 1.19209 1.20571 1.19265 1.21658 1.04958 0.96164 0.91280 1.21330 1.02514 0.91076 1.02681 1.23254 0.93294 1.01934 1.03888 1.23134 0.97360 1.03316 0.95673 0.89908 0.92853 0.91149 0.73773 0.83965 0.83718 0.91640 0.91497 0.97847 0.97956 0.92622 0.91190 0.91272 0.91877 0.88125 0.89142 0.88033 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.36 71.98 0.67 -2.24 16 2 C 0.18 3.25 2.77 44.99 0.12 3.38 16 3 H 0.08 1.54 6.91 -2.39 -0.02 1.52 16 4 N -1.10 -22.52 5.26 -169.38 -0.89 -23.41 16 5 S 2.63 75.50 5.38 -56.49 -0.30 75.20 16 6 O -0.99 -34.54 18.08 -127.65 -2.31 -36.85 16 7 O -0.99 -33.71 17.11 -127.65 -2.18 -35.89 16 8 C -0.61 -18.49 5.96 71.98 0.43 -18.06 16 9 C -0.11 -4.35 5.16 30.59 0.16 -4.19 16 10 C 0.03 1.65 4.97 29.85 0.15 1.80 16 11 C -0.55 -31.66 9.11 25.60 0.23 -31.43 16 12 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 13 C 0.00 0.24 5.46 84.65 0.46 0.70 16 14 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16 15 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 C -0.14 -2.04 2.01 -52.18 -0.10 -2.15 16 20 C -0.12 -1.46 8.81 71.98 0.63 -0.83 16 21 C -0.19 -2.86 9.89 30.59 0.30 -2.56 16 22 C -0.16 -1.96 9.44 30.59 0.29 -1.67 16 23 H 0.08 1.14 7.29 -2.39 -0.02 1.12 16 24 H 0.05 1.17 7.42 -2.39 -0.02 1.15 16 25 H 0.07 1.06 8.14 -2.38 -0.02 1.05 16 26 H 0.42 7.12 6.69 -96.75 -0.65 6.47 16 27 H 0.14 3.78 7.44 -2.39 -0.02 3.76 16 28 H 0.14 3.92 8.14 -2.39 -0.02 3.90 16 29 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 32 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.73 8.11 -2.39 -0.02 0.71 16 36 H 0.06 0.79 6.90 -2.38 -0.02 0.77 16 37 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.54 8.05 -2.39 -0.02 1.52 16 39 H 0.10 1.18 7.61 -2.39 -0.02 1.16 16 40 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -72.54 338.67 0.34 -72.20 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.36 Total: 15.25 kcal Atomic # 6 Polarization: -60.59 SS G_CDS: 3.35 Total: -57.24 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -0.61 Total: -78.90 kcal Atomic # 8 Polarization: -68.25 SS G_CDS: -4.49 Total: -72.74 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 75.50 SS G_CDS: -0.30 Total: 75.20 kcal Total: -72.54 0.34 -72.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665937809.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.709 kcal (2) G-P(sol) polarization free energy of solvation -72.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds