Wall clock time and date at job start Mon Mar 30 2020 02:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47193 * 2 1 4 4 N 1.46496 * 109.47025 * 120.00134 * 2 1 3 5 5 S 1.65599 * 120.00146 * 264.99940 * 4 2 1 6 6 O 1.42105 * 104.27655 * 308.92954 * 5 4 2 7 7 O 1.42101 * 104.27764 * 181.07391 * 5 4 2 8 8 C 1.81395 * 104.44748 * 65.00260 * 5 4 2 9 9 C 1.52999 * 109.46986 * 180.02562 * 8 5 4 10 10 C 1.53002 * 109.47213 * 180.02562 * 9 8 5 11 11 C 1.50706 * 109.47044 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00265 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99848 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99731 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99899 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47633 * 59.99291 * 15 13 11 17 17 H 1.48504 * 109.47025 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47285 * 299.99307 * 15 13 11 19 19 C 1.53003 * 109.46988 * 240.00334 * 2 1 3 20 20 C 1.53000 * 115.54695 * 274.41688 * 19 2 1 21 21 C 1.52995 * 117.49953 * 128.74774 * 19 2 1 22 22 C 1.52994 * 117.49806 * 60.08461 * 19 2 1 23 23 H 1.09003 * 109.46959 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46789 * 299.99891 * 1 2 3 25 25 H 1.08999 * 109.47126 * 59.99779 * 1 2 3 26 26 H 0.97001 * 119.99851 * 85.00466 * 4 2 1 27 27 H 1.09003 * 109.47393 * 299.99669 * 8 5 4 28 28 H 1.08994 * 109.47678 * 60.00285 * 8 5 4 29 29 H 1.09004 * 109.47080 * 299.99725 * 9 8 5 30 30 H 1.09005 * 109.47285 * 59.99790 * 9 8 5 31 31 H 1.09003 * 109.47218 * 299.99466 * 10 9 8 32 32 H 1.08995 * 109.47220 * 59.99596 * 10 9 8 33 33 H 0.97002 * 119.99124 * 180.02562 * 14 13 11 34 34 H 1.08994 * 109.47543 * 60.00331 * 20 19 2 35 35 H 1.09003 * 109.46782 * 179.97438 * 20 19 2 36 36 H 1.08998 * 109.47185 * 299.99927 * 20 19 2 37 37 H 1.09007 * 117.49991 * 359.97438 * 21 19 2 38 38 H 1.08995 * 117.50140 * 145.01811 * 21 19 2 39 39 H 1.09003 * 117.50119 * 214.97803 * 22 19 2 40 40 H 1.08998 * 117.50462 * 359.97438 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 16 2.4122 0.1771 2.5505 6 8 3.2875 1.1906 2.0751 7 8 2.8607 -0.8030 3.4765 8 6 0.8408 0.8987 3.0985 9 6 1.0754 1.7348 4.3582 10 6 -0.2502 2.3430 4.8208 11 6 -0.0190 3.1670 6.0613 12 1 0.9740 3.2485 6.4782 13 6 -1.0753 3.8162 6.6645 14 7 -2.2845 3.7166 6.1570 15 14 -0.7889 4.8369 8.2024 16 1 0.1764 5.9247 7.9019 17 1 -2.0754 5.4273 8.6513 18 1 -0.2398 3.9707 9.2764 19 6 2.0400 -0.7212 -1.2493 20 6 2.1597 -2.2419 -1.1307 21 6 3.0763 0.0040 -2.1101 22 6 1.6374 -0.1482 -2.6096 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 2.1110 -1.6562 1.1948 27 1 0.4387 1.5352 2.3102 28 1 0.1316 0.1008 3.3185 29 1 1.4777 1.0988 5.1467 30 1 1.7845 2.5328 4.1378 31 1 -0.6529 2.9790 4.0325 32 1 -0.9589 1.5448 5.0412 33 1 -3.0275 4.1736 6.5812 34 1 1.1810 -2.6672 -0.9089 35 1 2.5290 -2.6517 -2.0708 36 1 2.8541 -2.4902 -0.3280 37 1 3.3945 0.9951 -1.7866 38 1 3.8431 -0.6022 -2.5922 39 1 1.4582 -0.8546 -3.4202 40 1 1.0088 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665937810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:45 Heat of formation + Delta-G solvation = -73.308983 kcal Electronic energy + Delta-G solvation = -19786.004124 eV Core-core repulsion = 16727.962296 eV Total energy + Delta-G solvation = -3058.041828 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.19270 -36.85377 -35.73001 -34.82447 -34.64488 -32.19894 -29.73159 -28.76888 -27.78647 -24.03508 -23.54134 -22.47258 -20.64624 -19.38590 -19.22111 -17.52736 -16.83361 -16.45329 -15.76274 -15.43349 -14.75164 -14.50697 -14.48946 -14.12824 -13.93713 -13.17153 -12.87474 -12.68833 -12.49073 -12.27712 -12.20929 -11.92036 -11.83293 -11.77665 -11.70991 -11.53635 -11.23001 -10.99138 -10.89397 -10.82298 -10.58649 -10.42038 -10.06304 -9.94216 -9.59821 -9.32086 -9.08048 -8.40346 -6.05618 -4.08656 0.49011 2.84820 3.32330 3.36125 3.39427 3.50301 3.96385 4.26695 4.42639 4.44688 4.54721 4.67352 4.68462 4.95549 5.13289 5.15040 5.16860 5.30479 5.32678 5.42553 5.46930 5.54452 5.58117 5.69166 5.72450 5.88086 5.90250 5.92152 6.05894 6.15355 6.27449 6.45707 6.87151 6.95122 7.56737 7.66978 7.92349 8.32966 8.97337 9.56002 11.05568 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.031914 B = 0.003792 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.154849 B = 7381.628512 C = 7768.228860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.182 3.818 3 H 0.093 0.907 4 N -1.117 6.117 5 S 2.599 3.401 6 O -0.962 6.962 7 O -0.965 6.965 8 C -0.611 4.611 9 C -0.106 4.106 10 C 0.031 3.969 11 C -0.527 4.527 12 H 0.058 0.942 13 C 0.058 3.942 14 N -0.896 5.896 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.131 4.131 20 C -0.117 4.117 21 C -0.174 4.174 22 C -0.169 4.169 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.414 0.586 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.262 0.738 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.850 -10.573 -17.577 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.074 3.926 3 H 0.111 0.889 4 N -0.875 5.875 5 S 2.695 3.305 6 O -0.952 6.952 7 O -0.955 6.955 8 C -0.742 4.742 9 C -0.145 4.145 10 C -0.007 4.007 11 C -0.565 4.565 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.132 4.132 20 C -0.174 4.174 21 C -0.210 4.210 22 C -0.207 4.207 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.249 0.751 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.547 -10.263 -17.193 21.066 hybrid contribution -0.698 0.232 0.679 1.001 sum 5.848 -10.031 -16.514 20.187 Atomic orbital electron populations 1.22460 0.94846 1.03250 1.03159 1.20295 0.93704 0.95703 0.82890 0.88868 1.55815 1.84316 1.19813 1.27606 1.05323 0.77632 0.74502 0.73081 1.93566 1.61816 1.60449 1.79392 1.93574 1.80184 1.59125 1.62621 1.30665 1.21121 1.12232 1.10219 1.21504 1.03602 0.97691 0.91732 1.19056 0.89818 0.95637 0.96208 1.21224 0.94573 1.30048 1.10699 0.92424 1.25015 0.95124 0.96603 0.97594 1.69950 0.99496 1.43541 1.40461 0.86614 0.77389 0.80519 0.83254 1.20117 1.21250 1.20116 1.21592 1.04625 0.95533 0.91497 1.21288 1.02089 0.91956 1.02072 1.23182 0.92405 1.02232 1.03228 1.23069 0.98320 1.03128 0.96170 0.91598 0.91386 0.91114 0.75095 0.85420 0.85211 0.91598 0.91589 0.96136 0.96118 0.92852 0.91804 0.92246 0.91812 0.88279 0.88777 0.88669 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 9.32 37.16 0.35 -1.22 16 2 C 0.18 1.81 2.90 -67.93 -0.20 1.61 16 3 H 0.09 1.00 7.24 -51.93 -0.38 0.62 16 4 N -1.12 -12.30 5.25 -4.89 -0.03 -12.33 16 5 S 2.60 38.61 5.44 -107.50 -0.58 38.03 16 6 O -0.96 -17.06 17.39 -57.54 -1.00 -18.07 16 7 O -0.96 -17.16 18.08 -57.54 -1.04 -18.20 16 8 C -0.61 -9.37 5.22 37.16 0.19 -9.18 16 9 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 10 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 11 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 12 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 15 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C -0.13 -1.12 2.01 -154.51 -0.31 -1.43 16 20 C -0.12 -0.87 8.81 37.16 0.33 -0.54 16 21 C -0.17 -1.47 9.89 -26.70 -0.26 -1.74 16 22 C -0.17 -1.24 9.45 -26.70 -0.25 -1.50 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.64 5.78 -51.93 -0.30 0.34 16 25 H 0.07 0.54 7.29 -51.93 -0.38 0.16 16 26 H 0.41 3.86 6.69 -34.47 -0.23 3.63 16 27 H 0.13 1.74 6.77 -51.92 -0.35 1.38 16 28 H 0.13 1.78 8.14 -51.93 -0.42 1.35 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.39 8.11 -51.93 -0.42 -0.03 16 36 H 0.06 0.48 6.90 -51.93 -0.36 0.12 16 37 H 0.10 0.90 8.05 -51.92 -0.42 0.49 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.68 7.61 -51.93 -0.40 0.28 16 LS Contribution 336.39 15.07 5.07 5.07 Total: -1.00 -34.32 336.39 -9.29 -43.60 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.58 Total: 0.38 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: -0.84 Total: -29.26 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.71 Total: -38.14 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -2.04 Total: -36.27 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 38.61 SS G_CDS: -0.58 Total: 38.03 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.32 -9.29 -43.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665937810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.704 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds