Wall clock time and date at job start Mon Mar 30 2020 02:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47193 * 2 1 4 4 N 1.46496 * 109.47025 * 120.00134 * 2 1 3 5 5 S 1.65599 * 120.00146 * 264.99940 * 4 2 1 6 6 O 1.42105 * 104.27655 * 308.92954 * 5 4 2 7 7 O 1.42101 * 104.27764 * 181.07391 * 5 4 2 8 8 C 1.81395 * 104.44748 * 65.00260 * 5 4 2 9 9 C 1.52999 * 109.46986 * 180.02562 * 8 5 4 10 10 C 1.53002 * 109.47213 * 180.02562 * 9 8 5 11 11 C 1.50706 * 109.47044 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00265 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99848 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99731 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99899 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47633 * 59.99291 * 15 13 11 17 17 H 1.48504 * 109.47025 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47285 * 299.99307 * 15 13 11 19 19 C 1.53003 * 109.46988 * 240.00334 * 2 1 3 20 20 C 1.53000 * 115.54695 * 274.41688 * 19 2 1 21 21 C 1.52995 * 117.49953 * 128.74774 * 19 2 1 22 22 C 1.52994 * 117.49806 * 60.08461 * 19 2 1 23 23 H 1.09003 * 109.46959 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46789 * 299.99891 * 1 2 3 25 25 H 1.08999 * 109.47126 * 59.99779 * 1 2 3 26 26 H 0.97001 * 119.99851 * 85.00466 * 4 2 1 27 27 H 1.09003 * 109.47393 * 299.99669 * 8 5 4 28 28 H 1.08994 * 109.47678 * 60.00285 * 8 5 4 29 29 H 1.09004 * 109.47080 * 299.99725 * 9 8 5 30 30 H 1.09005 * 109.47285 * 59.99790 * 9 8 5 31 31 H 1.09003 * 109.47218 * 299.99466 * 10 9 8 32 32 H 1.08995 * 109.47220 * 59.99596 * 10 9 8 33 33 H 0.97002 * 119.99124 * 180.02562 * 14 13 11 34 34 H 1.08994 * 109.47543 * 60.00331 * 20 19 2 35 35 H 1.09003 * 109.46782 * 179.97438 * 20 19 2 36 36 H 1.08998 * 109.47185 * 299.99927 * 20 19 2 37 37 H 1.09007 * 117.49991 * 359.97438 * 21 19 2 38 38 H 1.08995 * 117.50140 * 145.01811 * 21 19 2 39 39 H 1.09003 * 117.50119 * 214.97803 * 22 19 2 40 40 H 1.08998 * 117.50462 * 359.97438 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 16 2.4122 0.1771 2.5505 6 8 3.2875 1.1906 2.0751 7 8 2.8607 -0.8030 3.4765 8 6 0.8408 0.8987 3.0985 9 6 1.0754 1.7348 4.3582 10 6 -0.2502 2.3430 4.8208 11 6 -0.0190 3.1670 6.0613 12 1 0.9740 3.2485 6.4782 13 6 -1.0753 3.8162 6.6645 14 7 -2.2845 3.7166 6.1570 15 14 -0.7889 4.8369 8.2024 16 1 0.1764 5.9247 7.9019 17 1 -2.0754 5.4273 8.6513 18 1 -0.2398 3.9707 9.2764 19 6 2.0400 -0.7212 -1.2493 20 6 2.1597 -2.2419 -1.1307 21 6 3.0763 0.0040 -2.1101 22 6 1.6374 -0.1482 -2.6096 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 2.1110 -1.6562 1.1948 27 1 0.4387 1.5352 2.3102 28 1 0.1316 0.1008 3.3185 29 1 1.4777 1.0988 5.1467 30 1 1.7845 2.5328 4.1378 31 1 -0.6529 2.9790 4.0325 32 1 -0.9589 1.5448 5.0412 33 1 -3.0275 4.1736 6.5812 34 1 1.1810 -2.6672 -0.9089 35 1 2.5290 -2.6517 -2.0708 36 1 2.8541 -2.4902 -0.3280 37 1 3.3945 0.9951 -1.7866 38 1 3.8431 -0.6022 -2.5922 39 1 1.4582 -0.8546 -3.4202 40 1 1.0088 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665937810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:44 Heat of formation + Delta-G solvation = -96.857430 kcal Electronic energy + Delta-G solvation = -19787.025261 eV Core-core repulsion = 16727.962296 eV Total energy + Delta-G solvation = -3059.062965 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.88564 -38.18112 -37.06937 -36.48402 -35.61381 -34.17664 -30.56526 -29.64189 -29.32317 -25.67317 -24.55166 -23.09443 -22.38277 -20.40583 -20.13340 -18.75670 -18.50176 -17.60008 -17.16679 -16.67132 -16.44762 -15.82510 -15.44892 -15.08933 -14.65855 -14.52228 -14.19091 -13.84740 -13.60507 -13.36785 -13.31178 -13.20470 -13.15460 -12.97468 -12.92742 -12.72874 -12.66875 -12.58890 -12.19945 -12.11856 -11.75618 -11.65802 -11.40271 -11.28672 -11.09545 -10.66964 -10.56912 -10.25690 -8.22600 -6.33582 -0.74698 1.40295 1.42751 1.50700 1.76115 2.39927 2.74036 2.86393 3.10938 3.21982 3.61679 3.72745 3.88283 3.91442 4.03118 4.07806 4.22952 4.36994 4.44499 4.54852 4.64509 4.83055 4.85072 4.90708 4.96716 5.01230 5.05309 5.08426 5.13225 5.25048 5.31794 5.37673 5.45022 5.49056 5.63019 5.79336 6.11639 6.19789 6.81678 7.35660 8.88636 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.031914 B = 0.003792 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.154849 B = 7381.628512 C = 7768.228860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.174 3.826 3 H 0.083 0.917 4 N -1.102 6.102 5 S 2.626 3.374 6 O -0.991 6.991 7 O -0.993 6.993 8 C -0.610 4.610 9 C -0.106 4.106 10 C 0.032 3.968 11 C -0.555 4.555 12 H 0.059 0.941 13 C 0.004 3.996 14 N -0.929 5.929 15 Si 0.962 3.038 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.268 1.268 19 C -0.139 4.139 20 C -0.118 4.118 21 C -0.187 4.187 22 C -0.155 4.155 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.424 0.576 27 H 0.145 0.855 28 H 0.148 0.852 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.004 0.996 32 H 0.003 0.997 33 H 0.265 0.735 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.879 -11.141 -18.368 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.067 3.933 3 H 0.101 0.899 4 N -0.864 5.864 5 S 2.722 3.278 6 O -0.981 6.981 7 O -0.983 6.983 8 C -0.740 4.740 9 C -0.146 4.146 10 C -0.006 4.006 11 C -0.593 4.593 12 H 0.078 0.922 13 C -0.194 4.194 14 N -0.569 5.569 15 Si 0.787 3.213 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.141 4.141 20 C -0.175 4.175 21 C -0.224 4.224 22 C -0.192 4.192 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.103 0.897 26 H 0.262 0.738 27 H 0.163 0.837 28 H 0.166 0.834 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.583 -10.839 -17.980 22.002 hybrid contribution -0.721 0.388 0.841 1.173 sum 5.863 -10.451 -17.139 20.913 Atomic orbital electron populations 1.22477 0.93718 1.04124 1.03471 1.20487 0.94633 0.95344 0.82864 0.89873 1.55430 1.84107 1.20199 1.26645 1.04269 0.76786 0.73702 0.73062 1.93531 1.62832 1.61733 1.79974 1.93530 1.80741 1.59833 1.64241 1.30626 1.22412 1.12530 1.08475 1.21319 1.00837 0.98330 0.94065 1.18952 0.91921 0.94733 0.95020 1.21721 0.94864 1.30712 1.11967 0.92228 1.25920 0.94830 0.97783 1.00910 1.70063 1.00336 1.44472 1.42002 0.85544 0.77608 0.78958 0.79228 1.19250 1.20578 1.19271 1.21619 1.05033 0.96150 0.91270 1.21326 1.02599 0.91049 1.02556 1.23237 0.93388 1.01856 1.03919 1.23148 0.97183 1.03315 0.95570 0.90453 0.92187 0.89747 0.73762 0.83667 0.83388 0.91642 0.91608 0.97770 0.97817 0.92621 0.90887 0.91182 0.92269 0.89496 0.88027 0.87176 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 9.32 71.98 0.67 -2.12 16 2 C 0.17 3.19 2.90 45.00 0.13 3.32 16 3 H 0.08 1.71 7.24 -2.39 -0.02 1.69 16 4 N -1.10 -22.74 5.25 -169.38 -0.89 -23.63 16 5 S 2.63 76.28 5.44 -56.49 -0.31 75.97 16 6 O -0.99 -34.86 17.39 -127.65 -2.22 -37.08 16 7 O -0.99 -34.74 18.08 -127.65 -2.31 -37.04 16 8 C -0.61 -18.30 5.22 71.98 0.38 -17.92 16 9 C -0.11 -4.34 5.16 30.59 0.16 -4.18 16 10 C 0.03 1.65 4.97 29.85 0.15 1.80 16 11 C -0.55 -31.63 9.11 25.60 0.23 -31.39 16 12 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 13 C 0.00 0.22 5.46 84.65 0.46 0.69 16 14 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 15 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 C -0.14 -2.12 2.01 -52.18 -0.10 -2.22 16 20 C -0.12 -1.47 8.81 71.98 0.63 -0.84 16 21 C -0.19 -2.92 9.89 30.62 0.30 -2.62 16 22 C -0.15 -1.91 9.45 30.62 0.29 -1.62 16 23 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 1.03 5.78 -2.39 -0.01 1.02 16 25 H 0.08 1.09 7.29 -2.39 -0.02 1.07 16 26 H 0.42 7.18 6.69 -96.74 -0.65 6.54 16 27 H 0.15 3.82 6.77 -2.39 -0.02 3.81 16 28 H 0.15 3.88 8.14 -2.39 -0.02 3.86 16 29 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 31 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.73 8.11 -2.39 -0.02 0.71 16 36 H 0.06 0.78 6.90 -2.39 -0.02 0.77 16 37 H 0.09 1.56 8.05 -2.38 -0.02 1.54 16 38 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.11 1.05 8.14 -2.39 -0.02 1.04 16 40 H 0.10 1.18 7.61 -2.39 -0.02 1.16 16 Total: -1.00 -73.03 336.39 0.25 -72.78 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.37 Total: 15.20 kcal Atomic # 6 Polarization: -60.42 SS G_CDS: 3.30 Total: -57.12 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -0.61 Total: -78.92 kcal Atomic # 8 Polarization: -69.59 SS G_CDS: -4.53 Total: -74.12 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 76.28 SS G_CDS: -0.31 Total: 75.97 kcal Total: -73.03 0.25 -72.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665937810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.078 kcal (2) G-P(sol) polarization free energy of solvation -73.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds