Wall clock time and date at job start Mon Mar 30 2020 01:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00213 * 2 1 4 4 H 1.48504 * 109.46900 * 270.00300 * 3 2 1 5 5 H 1.48502 * 109.46814 * 29.99942 * 3 2 1 6 6 H 1.48493 * 109.47700 * 150.00076 * 3 2 1 7 7 C 1.37881 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99580 * 0.27599 * 7 2 1 10 10 N 1.46903 * 109.47095 * 179.72437 * 9 7 2 11 11 C 1.46904 * 110.99703 * 294.30200 * 10 9 7 12 12 C 1.53239 * 109.33742 * 172.74416 * 11 10 9 13 13 N 1.47086 * 108.52170 * 53.83317 * 12 11 10 14 14 C 1.34776 * 120.88449 * 128.83531 * 13 12 11 15 15 O 1.21550 * 119.99641 * 176.19880 * 14 13 12 16 16 C 1.47836 * 119.99816 * 356.20312 * 14 13 12 17 17 C 1.40025 * 120.55396 * 228.67964 * 16 14 13 18 18 C 1.38366 * 118.28454 * 179.73426 * 17 16 14 19 19 C 1.38350 * 119.30044 * 0.55760 * 18 17 16 20 20 N 1.31915 * 121.08347 * 359.70024 * 19 18 17 21 21 C 1.31695 * 121.88003 * 359.97438 * 20 19 18 22 22 C 1.47080 * 118.23323 * 308.81094 * 13 12 11 23 23 C 1.46891 * 111.00238 * 170.00033 * 10 9 7 24 24 H 0.96996 * 119.99596 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47054 * 299.72083 * 9 7 2 26 26 H 1.08998 * 109.47386 * 59.72270 * 9 7 2 27 27 H 1.09001 * 109.49039 * 292.70335 * 11 10 9 28 28 H 1.08996 * 109.49373 * 52.78730 * 11 10 9 29 29 H 1.08995 * 109.63028 * 294.12291 * 12 11 10 30 30 H 1.09002 * 109.62864 * 173.53528 * 12 11 10 31 31 H 1.07994 * 120.85985 * 359.97438 * 17 16 14 32 32 H 1.08005 * 120.34383 * 180.25365 * 18 17 16 33 33 H 1.08006 * 119.45602 * 179.72134 * 19 18 17 34 34 H 1.07999 * 119.71867 * 179.97438 * 21 20 19 35 35 H 1.09000 * 109.63304 * 291.47661 * 22 13 12 36 36 H 1.08996 * 109.78839 * 170.98868 * 22 13 12 37 37 H 1.09006 * 109.49103 * 307.21142 * 23 10 9 38 38 H 1.08999 * 109.49522 * 67.29011 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 -0.0052 10 7 2.2057 -3.6157 -0.0100 11 6 2.9768 -3.6435 -1.2601 12 6 4.0790 -4.7027 -1.1529 13 7 3.4617 -5.9829 -0.7744 14 6 3.7124 -7.1060 -1.4759 15 8 3.2491 -8.1681 -1.1086 16 6 4.5508 -7.0463 -2.6920 17 6 4.1260 -7.6535 -3.8801 18 6 4.9452 -7.5639 -4.9916 19 6 6.1515 -6.8938 -4.8913 20 7 6.5284 -6.3358 -3.7570 21 6 5.7810 -6.3884 -2.6740 22 6 2.5639 -6.0049 0.3904 23 6 1.5213 -4.8945 0.2225 24 1 -0.4849 0.8400 0.0004 25 1 0.6245 -2.5607 0.8846 26 1 0.6244 -2.5530 -0.8954 27 1 2.3149 -3.8901 -2.0903 28 1 3.4272 -2.6659 -1.4315 29 1 4.8003 -4.4048 -0.3919 30 1 4.5802 -4.8083 -2.1151 31 1 3.1815 -8.1749 -3.9288 32 1 4.6483 -8.0165 -5.9262 33 1 6.7950 -6.8263 -5.7562 34 1 6.1240 -5.9196 -1.7635 35 1 3.1395 -5.8322 1.2998 36 1 2.0631 -6.9710 0.4521 37 1 0.9161 -4.8240 1.1264 38 1 0.8797 -5.1236 -0.6283 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020180995.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:20 Heat of formation + Delta-G solvation = 19.321369 kcal Electronic energy + Delta-G solvation = -21051.262535 eV Core-core repulsion = 17894.086261 eV Total energy + Delta-G solvation = -3157.176275 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.90804 -39.33625 -37.54822 -34.54756 -32.83797 -32.56615 -31.88028 -30.53300 -28.33050 -25.90083 -24.36212 -24.04617 -23.10079 -22.03146 -20.80350 -19.14867 -17.56703 -17.27004 -16.59447 -16.37709 -15.99398 -15.13599 -14.77900 -14.63037 -14.47615 -14.01755 -13.82055 -13.76672 -13.59065 -13.37451 -12.86601 -12.43418 -12.23906 -11.95526 -11.34780 -11.15960 -11.03162 -10.80730 -10.68103 -10.60838 -10.25863 -10.15726 -9.92010 -9.61712 -9.34573 -9.26807 -8.60145 -8.49022 -7.39197 -6.09495 -4.11749 0.55250 0.95301 2.59281 2.95732 3.27490 3.34421 3.38070 3.53580 4.08489 4.35720 4.37598 4.56132 4.59713 4.73565 4.78276 5.12765 5.19171 5.25944 5.32761 5.35876 5.46013 5.58840 5.67798 5.74346 5.74965 5.85962 5.94586 6.21531 6.29278 6.37447 6.40610 6.57587 7.16466 7.22837 7.38473 7.60909 7.70071 7.96139 8.05998 8.07545 8.42660 8.95325 9.53092 11.01322 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022215 B = 0.004398 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.104384 B = 6364.692843 C = 7173.074338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.051 3.949 12 C 0.100 3.900 13 N -0.598 5.598 14 C 0.562 3.438 15 O -0.542 6.542 16 C -0.174 4.174 17 C -0.028 4.028 18 C -0.176 4.176 19 C 0.113 3.887 20 N -0.485 5.485 21 C 0.131 3.869 22 C 0.118 3.882 23 C 0.040 3.960 24 H 0.262 0.738 25 H 0.033 0.967 26 H -0.009 1.009 27 H 0.024 0.976 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.242 -13.304 -7.750 17.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.078 4.078 12 C -0.023 4.023 13 N -0.330 5.330 14 C 0.349 3.651 15 O -0.420 6.420 16 C -0.179 4.179 17 C -0.054 4.054 18 C -0.196 4.196 19 C -0.044 4.044 20 N -0.193 5.193 21 C -0.027 4.027 22 C -0.004 4.004 23 C -0.089 4.089 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.009 0.991 27 H 0.043 0.957 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.178 0.822 34 H 0.181 0.819 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 9.952 -13.216 -7.111 18.008 hybrid contribution -1.112 0.503 -0.760 1.438 sum 8.841 -12.713 -7.871 17.370 Atomic orbital electron populations 1.69953 1.06118 1.26906 1.50699 1.24991 0.94852 0.99370 0.95295 0.86499 0.79842 0.83041 0.78059 1.20727 1.21227 1.19687 1.21128 0.93470 0.89832 1.50488 0.91770 1.19735 0.89986 0.87147 0.96271 1.62096 1.28102 1.02676 1.33121 1.22325 0.95049 0.99027 0.91436 1.22335 0.96701 0.82430 1.00848 1.48170 1.46482 1.08400 1.29905 1.18111 0.80425 0.83854 0.82745 1.90771 1.52733 1.28853 1.69672 1.20983 0.98142 1.03003 0.95757 1.21626 0.99408 0.93513 0.90869 1.22130 0.96028 1.01800 0.99663 1.22978 0.94084 0.91662 0.95633 1.67738 1.33750 1.18344 0.99456 1.23100 0.89424 0.92994 0.97132 1.21816 0.91656 0.99657 0.87232 1.22417 0.94892 0.90505 1.01082 0.92838 0.94940 0.99102 0.95732 0.88290 0.89990 0.89871 0.84119 0.84043 0.82249 0.81872 0.90520 0.89262 0.89815 0.95521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.51 -13.72 8.41 -34.44 -0.29 -14.01 16 8 H 0.06 1.69 7.13 -52.48 -0.37 1.31 16 9 C 0.19 4.84 4.72 -4.98 -0.02 4.81 16 10 N -0.53 -10.83 4.62 -235.76 -1.09 -11.92 16 11 C 0.05 0.91 5.46 -3.70 -0.02 0.89 16 12 C 0.10 1.40 5.43 -3.60 -0.02 1.39 16 13 N -0.60 -8.85 3.01 -173.58 -0.52 -9.37 16 14 C 0.56 8.44 7.29 -12.33 -0.09 8.35 16 15 O -0.54 -9.63 16.51 5.32 0.09 -9.54 16 16 C -0.17 -2.19 5.06 -104.82 -0.53 -2.72 16 17 C -0.03 -0.30 9.88 -38.86 -0.38 -0.68 16 18 C -0.18 -1.50 10.10 -39.49 -0.40 -1.90 16 19 C 0.11 1.03 11.17 -17.47 -0.20 0.83 16 20 N -0.48 -5.58 10.35 -12.91 -0.13 -5.72 16 21 C 0.13 1.53 8.56 -17.13 -0.15 1.39 16 22 C 0.12 1.78 6.58 -3.60 -0.02 1.76 16 23 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.03 0.87 7.97 -51.93 -0.41 0.46 16 26 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 1.89 6.67 -51.93 -0.35 1.54 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.04 4.64 -51.93 -0.24 0.80 16 31 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.16 1.69 6.94 -52.49 -0.36 1.33 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.09 1.32 7.09 -51.93 -0.37 0.95 16 37 H 0.08 1.40 7.99 -51.93 -0.41 0.99 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -31.79 313.96 -8.49 -40.28 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -5.04 Total: -1.33 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.24 Total: 2.24 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -1.01 Total: -52.33 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.79 -8.49 -40.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180995.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.597 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds