Wall clock time and date at job start Mon Mar 30 2020 01:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00213 * 2 1 4 4 H 1.48504 * 109.46900 * 270.00300 * 3 2 1 5 5 H 1.48502 * 109.46814 * 29.99942 * 3 2 1 6 6 H 1.48493 * 109.47700 * 150.00076 * 3 2 1 7 7 C 1.37881 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99580 * 0.27599 * 7 2 1 10 10 N 1.46903 * 109.47095 * 179.72437 * 9 7 2 11 11 C 1.46904 * 110.99703 * 294.30200 * 10 9 7 12 12 C 1.53239 * 109.33742 * 172.74416 * 11 10 9 13 13 N 1.47086 * 108.52170 * 53.83317 * 12 11 10 14 14 C 1.34776 * 120.88449 * 128.83531 * 13 12 11 15 15 O 1.21550 * 119.99641 * 176.19880 * 14 13 12 16 16 C 1.47836 * 119.99816 * 356.20312 * 14 13 12 17 17 C 1.40025 * 120.55396 * 228.67964 * 16 14 13 18 18 C 1.38366 * 118.28454 * 179.73426 * 17 16 14 19 19 C 1.38350 * 119.30044 * 0.55760 * 18 17 16 20 20 N 1.31915 * 121.08347 * 359.70024 * 19 18 17 21 21 C 1.31695 * 121.88003 * 359.97438 * 20 19 18 22 22 C 1.47080 * 118.23323 * 308.81094 * 13 12 11 23 23 C 1.46891 * 111.00238 * 170.00033 * 10 9 7 24 24 H 0.96996 * 119.99596 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47054 * 299.72083 * 9 7 2 26 26 H 1.08998 * 109.47386 * 59.72270 * 9 7 2 27 27 H 1.09001 * 109.49039 * 292.70335 * 11 10 9 28 28 H 1.08996 * 109.49373 * 52.78730 * 11 10 9 29 29 H 1.08995 * 109.63028 * 294.12291 * 12 11 10 30 30 H 1.09002 * 109.62864 * 173.53528 * 12 11 10 31 31 H 1.07994 * 120.85985 * 359.97438 * 17 16 14 32 32 H 1.08005 * 120.34383 * 180.25365 * 18 17 16 33 33 H 1.08006 * 119.45602 * 179.72134 * 19 18 17 34 34 H 1.07999 * 119.71867 * 179.97438 * 21 20 19 35 35 H 1.09000 * 109.63304 * 291.47661 * 22 13 12 36 36 H 1.08996 * 109.78839 * 170.98868 * 22 13 12 37 37 H 1.09006 * 109.49103 * 307.21142 * 23 10 9 38 38 H 1.08999 * 109.49522 * 67.29011 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 -0.0052 10 7 2.2057 -3.6157 -0.0100 11 6 2.9768 -3.6435 -1.2601 12 6 4.0790 -4.7027 -1.1529 13 7 3.4617 -5.9829 -0.7744 14 6 3.7124 -7.1060 -1.4759 15 8 3.2491 -8.1681 -1.1086 16 6 4.5508 -7.0463 -2.6920 17 6 4.1260 -7.6535 -3.8801 18 6 4.9452 -7.5639 -4.9916 19 6 6.1515 -6.8938 -4.8913 20 7 6.5284 -6.3358 -3.7570 21 6 5.7810 -6.3884 -2.6740 22 6 2.5639 -6.0049 0.3904 23 6 1.5213 -4.8945 0.2225 24 1 -0.4849 0.8400 0.0004 25 1 0.6245 -2.5607 0.8846 26 1 0.6244 -2.5530 -0.8954 27 1 2.3149 -3.8901 -2.0903 28 1 3.4272 -2.6659 -1.4315 29 1 4.8003 -4.4048 -0.3919 30 1 4.5802 -4.8083 -2.1151 31 1 3.1815 -8.1749 -3.9288 32 1 4.6483 -8.0165 -5.9262 33 1 6.7950 -6.8263 -5.7562 34 1 6.1240 -5.9196 -1.7635 35 1 3.1395 -5.8322 1.2998 36 1 2.0631 -6.9710 0.4521 37 1 0.9161 -4.8240 1.1264 38 1 0.8797 -5.1236 -0.6283 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020180995.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:20 Heat of formation + Delta-G solvation = -2.820391 kcal Electronic energy + Delta-G solvation = -21052.222674 eV Core-core repulsion = 17894.086261 eV Total energy + Delta-G solvation = -3158.136413 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.90919 -40.39478 -38.97139 -36.08227 -34.49422 -33.62530 -32.96348 -31.72055 -30.02609 -27.51189 -25.49172 -25.08859 -24.24776 -23.68706 -22.18633 -20.37045 -18.69239 -18.49751 -18.07958 -17.48161 -17.12959 -16.70552 -16.25660 -16.04232 -15.59318 -15.38140 -15.28890 -14.84517 -14.75770 -14.28860 -14.17429 -14.02341 -13.54569 -13.18049 -13.05923 -12.77877 -12.62701 -12.43053 -12.35351 -12.17917 -11.82066 -11.34286 -11.28623 -10.98349 -10.62095 -10.49708 -10.13946 -9.87140 -9.10315 -8.20424 -6.30687 -0.27344 0.17394 1.43686 1.44861 1.46662 1.56372 1.82275 2.41147 2.72595 3.11853 3.16926 3.21863 3.50185 3.76452 3.87430 3.91760 3.98031 4.04756 4.18019 4.20512 4.36462 4.42880 4.49816 4.67059 4.68430 4.79781 4.89488 4.95820 4.97434 5.06949 5.16590 5.20293 5.35039 5.57826 5.63609 6.01257 6.14342 6.28750 6.53339 6.81995 6.85005 6.90791 7.39505 8.90978 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022215 B = 0.004398 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.104384 B = 6364.692843 C = 7173.074338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.522 4.522 8 H 0.070 0.930 9 C 0.208 3.792 10 N -0.536 5.536 11 C 0.051 3.949 12 C 0.114 3.886 13 N -0.600 5.600 14 C 0.565 3.435 15 O -0.574 6.574 16 C -0.195 4.195 17 C -0.040 4.040 18 C -0.164 4.164 19 C 0.114 3.886 20 N -0.504 5.504 21 C 0.127 3.873 22 C 0.127 3.873 23 C 0.042 3.958 24 H 0.264 0.736 25 H 0.007 0.993 26 H -0.041 1.041 27 H 0.012 0.988 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.143 0.857 32 H 0.178 0.822 33 H 0.195 0.805 34 H 0.171 0.829 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.506 -13.503 -9.051 19.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.560 4.560 8 H 0.088 0.912 9 C 0.081 3.919 10 N -0.261 5.261 11 C -0.077 4.077 12 C -0.008 4.008 13 N -0.332 5.332 14 C 0.354 3.646 15 O -0.455 6.455 16 C -0.200 4.200 17 C -0.066 4.066 18 C -0.183 4.183 19 C -0.042 4.042 20 N -0.212 5.212 21 C -0.031 4.031 22 C 0.005 3.995 23 C -0.087 4.087 24 H 0.073 0.927 25 H 0.025 0.975 26 H -0.023 1.023 27 H 0.030 0.970 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.161 0.839 32 H 0.195 0.805 33 H 0.211 0.789 34 H 0.188 0.812 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 12.241 -13.428 -8.416 20.025 hybrid contribution -1.831 0.484 -0.444 1.945 sum 10.410 -12.944 -8.860 18.826 Atomic orbital electron populations 1.70090 1.07879 1.27917 1.51802 1.25916 0.95657 1.03252 0.94768 0.85380 0.78672 0.78190 0.78379 1.19880 1.21131 1.18524 1.21456 0.93848 0.90667 1.50011 0.91198 1.19390 0.90082 0.88879 0.93509 1.62025 1.27043 1.02582 1.34459 1.22345 0.95532 0.99980 0.89892 1.22265 0.95166 0.80757 1.02624 1.48221 1.46400 1.08733 1.29818 1.18470 0.80010 0.83143 0.83017 1.90746 1.54250 1.29915 1.70553 1.20869 0.98610 1.05228 0.95339 1.21858 1.00110 0.93458 0.91169 1.22496 0.95068 1.00616 1.00113 1.23633 0.94571 0.90173 0.95803 1.67799 1.34062 1.19247 1.00128 1.23178 0.89082 0.93046 0.97758 1.21705 0.91276 0.98563 0.88006 1.22458 0.95582 0.89916 1.00703 0.92739 0.97466 1.02347 0.96997 0.89417 0.88504 0.87762 0.83889 0.80502 0.78853 0.81166 0.89257 0.88828 0.89565 0.96660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.53 13.29 21.45 0.28 -55.25 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.97 42.93 29.54 68.60 2.03 44.95 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 7 C -0.52 -28.39 8.41 25.60 0.22 -28.17 16 8 H 0.07 3.65 7.13 -2.91 -0.02 3.63 16 9 C 0.21 10.77 4.72 85.56 0.40 11.18 16 10 N -0.54 -22.08 4.62 -899.82 -4.16 -26.24 16 11 C 0.05 1.85 5.46 86.38 0.47 2.32 16 12 C 0.11 3.08 5.43 86.35 0.47 3.55 16 13 N -0.60 -17.30 3.01 -821.35 -2.47 -19.77 16 14 C 0.56 16.60 7.29 86.78 0.63 17.24 16 15 O -0.57 -20.27 16.51 -3.87 -0.06 -20.34 16 16 C -0.20 -4.68 5.06 -20.00 -0.10 -4.78 16 17 C -0.04 -0.79 9.88 22.73 0.22 -0.56 16 18 C -0.16 -2.24 10.10 22.33 0.23 -2.01 16 19 C 0.11 1.68 11.17 84.71 0.95 2.63 16 20 N -0.50 -10.33 10.35 -194.76 -2.01 -12.35 16 21 C 0.13 2.73 8.56 85.02 0.73 3.46 16 22 C 0.13 3.75 6.58 86.35 0.57 4.32 16 23 C 0.04 1.50 5.62 86.39 0.49 1.99 16 24 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 25 H 0.01 0.41 7.97 -2.39 -0.02 0.39 16 26 H -0.04 -2.36 8.12 -2.39 -0.02 -2.38 16 27 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.09 3.35 6.67 -2.39 -0.02 3.33 16 29 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.10 2.43 4.64 -2.39 -0.01 2.42 16 31 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 33 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.17 3.23 6.94 -2.91 -0.02 3.21 16 35 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.09 2.73 7.09 -2.39 -0.02 2.72 16 37 H 0.09 2.97 7.99 -2.38 -0.02 2.95 16 38 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -69.63 313.96 0.39 -69.23 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 1.06 Total: 8.03 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 5.73 Total: 11.73 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -8.36 Total: -113.61 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.06 Total: -20.34 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -69.63 0.39 -69.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180995.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.413 kcal (2) G-P(sol) polarization free energy of solvation -69.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds