Wall clock time and date at job start Mon Mar 30 2020 02:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00080 * 2 1 4 4 H 1.48506 * 109.46945 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47404 * 240.00327 * 3 2 1 6 6 H 1.48500 * 109.46920 * 119.99868 * 3 2 1 7 7 C 1.38811 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00098 * 215.51106 * 7 2 1 9 9 N 1.36936 * 120.00209 * 35.50558 * 7 2 1 10 10 C 1.46931 * 120.62707 * 23.00713 * 9 7 2 11 11 C 1.53196 * 108.77659 * 126.36779 * 10 9 7 12 12 C 1.53045 * 109.31391 * 54.63041 * 11 10 9 13 13 C 1.53039 * 109.53658 * 298.64054 * 12 11 10 14 14 H 1.09002 * 109.49824 * 301.37333 * 13 12 11 15 15 C 1.50708 * 109.49531 * 181.31398 * 13 12 11 16 16 O 1.21276 * 119.99682 * 0.02562 * 15 13 12 17 17 N 1.34776 * 119.99798 * 179.97438 * 15 13 12 18 18 C 1.39410 * 119.99856 * 174.56316 * 17 15 13 19 19 C 1.39035 * 119.69364 * 186.00598 * 18 17 15 20 20 C 1.38366 * 119.09747 * 179.97438 * 19 18 17 21 21 C 1.38837 * 118.49281 * 359.97438 * 20 19 18 22 22 C 1.38071 * 119.31404 * 359.97438 * 21 20 19 23 23 N 1.31934 * 120.84630 * 359.72558 * 22 21 20 24 24 C 1.46926 * 120.63369 * 202.72082 * 9 7 2 25 25 H 0.97003 * 119.99550 * 182.34198 * 1 2 3 26 26 H 1.08998 * 109.58376 * 246.15132 * 10 9 7 27 27 H 1.09000 * 109.58785 * 6.44079 * 10 9 7 28 28 H 1.08994 * 109.50220 * 174.58298 * 11 10 9 29 29 H 1.09009 * 109.49618 * 294.68813 * 11 10 9 30 30 H 1.08999 * 109.45462 * 58.65643 * 12 11 10 31 31 H 1.08997 * 109.46006 * 178.63188 * 12 11 10 32 32 H 0.97001 * 120.00092 * 354.55367 * 17 15 13 33 33 H 1.07997 * 120.45422 * 0.02562 * 19 18 17 34 34 H 1.07999 * 120.75271 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.34421 * 180.02562 * 21 20 19 36 36 H 1.08004 * 119.57538 * 179.97438 * 22 21 20 37 37 H 1.08998 * 109.58192 * 353.42843 * 24 9 7 38 38 H 1.09000 * 109.58207 * 113.84519 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 -1.2125 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 2.9396 -1.2894 0.5427 9 7 1.5166 -2.2775 -0.6898 10 6 0.5811 -2.0856 -1.8064 11 6 1.1303 -2.8095 -3.0398 12 6 1.3984 -4.2749 -2.6890 13 6 2.4470 -4.3514 -1.5770 14 1 3.3640 -3.8634 -1.9075 15 6 2.7339 -5.7955 -1.2548 16 8 2.1570 -6.6769 -1.8555 17 7 3.6323 -6.1071 -0.2997 18 6 3.8155 -7.4366 0.0778 19 6 4.6500 -7.7400 1.1477 20 6 4.8224 -9.0636 1.5122 21 6 4.1510 -10.0420 0.7913 22 6 3.3370 -9.6684 -0.2595 23 7 3.1871 -8.3975 -0.5804 24 6 1.9171 -3.6448 -0.3308 25 1 -0.4849 -0.8394 0.0343 26 1 -0.3921 -2.4996 -1.5429 27 1 0.4800 -1.0214 -2.0196 28 1 0.4007 -2.7564 -3.8478 29 1 2.0596 -2.3354 -3.3561 30 1 0.4739 -4.7418 -2.3491 31 1 1.7663 -4.7981 -3.5716 32 1 4.1517 -5.4064 0.1248 33 1 5.1560 -6.9533 1.6874 34 1 5.4640 -9.3295 2.3392 35 1 4.2637 -11.0844 1.0504 36 1 2.8130 -10.4260 -0.8233 37 1 2.6990 -3.6091 0.4278 38 1 1.0550 -4.1885 0.0555 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048609844.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:32 Heat of formation + Delta-G solvation = 28.156890 kcal Electronic energy + Delta-G solvation = -21063.528930 eV Core-core repulsion = 17906.735792 eV Total energy + Delta-G solvation = -3156.793138 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81152 -39.26591 -37.16143 -34.87142 -33.35485 -32.48090 -31.02347 -30.26870 -29.47905 -25.11702 -24.42279 -23.70832 -22.60338 -22.00283 -20.29495 -19.18622 -18.12672 -17.44838 -16.78452 -16.25161 -15.49124 -15.34523 -14.71836 -14.40483 -14.26366 -13.92808 -13.64329 -13.57777 -13.19658 -12.93813 -12.87655 -12.40703 -12.15055 -11.92529 -11.08436 -10.84862 -10.77230 -10.65336 -10.29983 -10.13914 -10.08599 -10.01538 -9.95999 -9.87220 -9.43042 -8.97509 -8.33653 -8.28632 -6.99670 -6.24878 -3.20112 1.00211 1.21909 2.82984 2.93526 3.46213 3.51618 3.68939 3.85370 4.32553 4.53871 4.68121 4.84850 4.93546 4.99919 5.11952 5.18682 5.26063 5.40066 5.55070 5.56205 5.74054 5.83928 5.89159 6.03138 6.05789 6.18940 6.23168 6.39221 6.49754 6.55567 6.62748 6.66875 6.73261 7.05737 7.15933 7.19998 7.92626 8.01188 8.38722 8.49320 9.01848 9.78785 10.23396 11.09637 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028672 B = 0.004168 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.328083 B = 6717.008020 C = 7388.615932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.016 4.016 3 Si 1.057 2.943 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.370 4.370 8 H 0.059 0.941 9 N -0.593 5.593 10 C 0.148 3.852 11 C -0.137 4.137 12 C -0.087 4.087 13 C -0.123 4.123 14 H 0.097 0.903 15 C 0.513 3.487 16 O -0.477 6.477 17 N -0.664 5.664 18 C 0.368 3.632 19 C -0.212 4.212 20 C -0.049 4.049 21 C -0.215 4.215 22 C 0.131 3.869 23 N -0.479 5.479 24 C 0.162 3.838 25 H 0.270 0.730 26 H 0.017 0.983 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.419 0.581 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.156 0.844 37 H 0.057 0.943 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.503 -15.217 0.678 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.220 4.220 3 Si 0.886 3.114 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.498 4.498 8 H 0.077 0.923 9 N -0.317 5.317 10 C 0.022 3.978 11 C -0.176 4.176 12 C -0.126 4.126 13 C -0.146 4.146 14 H 0.115 0.885 15 C 0.300 3.700 16 O -0.345 6.345 17 N -0.310 5.310 18 C 0.136 3.864 19 C -0.236 4.236 20 C -0.075 4.075 21 C -0.237 4.237 22 C -0.027 4.027 23 N -0.194 5.194 24 C 0.035 3.965 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.256 0.744 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.173 0.827 37 H 0.076 0.924 38 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 8.277 -13.813 -0.508 16.111 hybrid contribution 1.137 -1.648 1.077 2.273 sum 9.414 -15.461 0.569 18.110 Atomic orbital electron populations 1.70815 1.06962 1.30280 1.45484 1.25736 0.96035 1.01419 0.98813 0.83644 0.75195 0.76242 0.76317 1.21155 1.22009 1.21937 1.19851 1.05132 0.91157 1.33621 0.92289 1.44101 1.53570 1.00325 1.33682 1.20984 0.91060 1.00005 0.85768 1.22083 1.01116 0.95091 0.99300 1.21203 0.97859 0.97059 0.96433 1.21941 1.01650 0.89931 1.01101 0.88519 1.21327 0.78025 0.92339 0.78310 1.90749 1.46880 1.49760 1.47132 1.43913 1.41406 1.05446 1.40280 1.18626 0.91583 0.85772 0.90405 1.21519 1.04068 0.98294 0.99708 1.21331 0.96404 0.91926 0.97820 1.22015 1.01653 1.00627 0.99356 1.22690 0.94149 0.92068 0.93801 1.67714 1.22600 1.00244 1.28811 1.20639 0.97295 0.86935 0.91638 0.91970 0.96464 0.90256 0.92504 0.92184 0.91977 0.92500 0.74384 0.84619 0.84696 0.84983 0.82668 0.92426 0.96233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 12.52 55.49 0.70 -25.57 16 2 C -0.02 -0.44 4.40 -17.43 -0.08 -0.52 16 3 Si 1.06 24.39 30.04 -169.99 -5.11 19.28 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.37 -9.91 9.42 -15.06 -0.14 -10.05 16 8 H 0.06 1.57 8.00 -52.49 -0.42 1.15 16 9 N -0.59 -14.35 2.90 -172.58 -0.50 -14.85 16 10 C 0.15 3.40 4.91 -3.71 -0.02 3.38 16 11 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 12 C -0.09 -1.58 4.46 -26.69 -0.12 -1.70 16 13 C -0.12 -2.15 2.66 -91.87 -0.24 -2.39 16 14 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 15 C 0.51 8.82 7.12 -10.98 -0.08 8.74 16 16 O -0.48 -9.63 14.25 5.56 0.08 -9.55 16 17 N -0.66 -9.39 5.27 -11.42 -0.06 -9.45 16 18 C 0.37 5.23 7.42 -154.70 -1.15 4.08 16 19 C -0.21 -2.28 9.94 -39.24 -0.39 -2.67 16 20 C -0.05 -0.44 10.17 -39.31 -0.40 -0.84 16 21 C -0.21 -2.01 10.11 -39.42 -0.40 -2.41 16 22 C 0.13 1.57 11.17 -17.57 -0.20 1.37 16 23 N -0.48 -7.58 7.89 -12.37 -0.10 -7.68 16 24 C 0.16 3.28 5.65 -3.94 -0.02 3.25 16 25 H 0.27 8.03 7.35 -40.82 -0.30 7.73 16 26 H 0.02 0.41 8.08 -51.93 -0.42 -0.01 16 27 H 0.08 2.03 6.28 -51.93 -0.33 1.70 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 30 H 0.06 1.19 8.13 -51.93 -0.42 0.76 16 31 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 32 H 0.42 4.67 8.42 -40.82 -0.34 4.33 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.06 1.08 7.65 -51.93 -0.40 0.68 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 314.46 15.07 4.74 4.74 Total: -1.00 -33.36 314.46 -8.87 -42.23 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.22 Total: 3.35 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -3.39 Total: -2.50 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.04 Total: -57.55 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -5.11 Total: 19.28 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.36 -8.87 -42.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048609844.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.386 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds