Wall clock time and date at job start Mon Mar 30 2020 02:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00080 * 2 1 4 4 H 1.48506 * 109.46945 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47404 * 240.00327 * 3 2 1 6 6 H 1.48500 * 109.46920 * 119.99868 * 3 2 1 7 7 C 1.38811 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00098 * 215.51106 * 7 2 1 9 9 N 1.36936 * 120.00209 * 35.50558 * 7 2 1 10 10 C 1.46931 * 120.62707 * 23.00713 * 9 7 2 11 11 C 1.53196 * 108.77659 * 126.36779 * 10 9 7 12 12 C 1.53045 * 109.31391 * 54.63041 * 11 10 9 13 13 C 1.53039 * 109.53658 * 298.64054 * 12 11 10 14 14 H 1.09002 * 109.49824 * 301.37333 * 13 12 11 15 15 C 1.50708 * 109.49531 * 181.31398 * 13 12 11 16 16 O 1.21276 * 119.99682 * 0.02562 * 15 13 12 17 17 N 1.34776 * 119.99798 * 179.97438 * 15 13 12 18 18 C 1.39410 * 119.99856 * 174.56316 * 17 15 13 19 19 C 1.39035 * 119.69364 * 186.00598 * 18 17 15 20 20 C 1.38366 * 119.09747 * 179.97438 * 19 18 17 21 21 C 1.38837 * 118.49281 * 359.97438 * 20 19 18 22 22 C 1.38071 * 119.31404 * 359.97438 * 21 20 19 23 23 N 1.31934 * 120.84630 * 359.72558 * 22 21 20 24 24 C 1.46926 * 120.63369 * 202.72082 * 9 7 2 25 25 H 0.97003 * 119.99550 * 182.34198 * 1 2 3 26 26 H 1.08998 * 109.58376 * 246.15132 * 10 9 7 27 27 H 1.09000 * 109.58785 * 6.44079 * 10 9 7 28 28 H 1.08994 * 109.50220 * 174.58298 * 11 10 9 29 29 H 1.09009 * 109.49618 * 294.68813 * 11 10 9 30 30 H 1.08999 * 109.45462 * 58.65643 * 12 11 10 31 31 H 1.08997 * 109.46006 * 178.63188 * 12 11 10 32 32 H 0.97001 * 120.00092 * 354.55367 * 17 15 13 33 33 H 1.07997 * 120.45422 * 0.02562 * 19 18 17 34 34 H 1.07999 * 120.75271 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.34421 * 180.02562 * 21 20 19 36 36 H 1.08004 * 119.57538 * 179.97438 * 22 21 20 37 37 H 1.08998 * 109.58192 * 353.42843 * 24 9 7 38 38 H 1.09000 * 109.58207 * 113.84519 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 -1.2125 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 2.9396 -1.2894 0.5427 9 7 1.5166 -2.2775 -0.6898 10 6 0.5811 -2.0856 -1.8064 11 6 1.1303 -2.8095 -3.0398 12 6 1.3984 -4.2749 -2.6890 13 6 2.4470 -4.3514 -1.5770 14 1 3.3640 -3.8634 -1.9075 15 6 2.7339 -5.7955 -1.2548 16 8 2.1570 -6.6769 -1.8555 17 7 3.6323 -6.1071 -0.2997 18 6 3.8155 -7.4366 0.0778 19 6 4.6500 -7.7400 1.1477 20 6 4.8224 -9.0636 1.5122 21 6 4.1510 -10.0420 0.7913 22 6 3.3370 -9.6684 -0.2595 23 7 3.1871 -8.3975 -0.5804 24 6 1.9171 -3.6448 -0.3308 25 1 -0.4849 -0.8394 0.0343 26 1 -0.3921 -2.4996 -1.5429 27 1 0.4800 -1.0214 -2.0196 28 1 0.4007 -2.7564 -3.8478 29 1 2.0596 -2.3354 -3.3561 30 1 0.4739 -4.7418 -2.3491 31 1 1.7663 -4.7981 -3.5716 32 1 4.1517 -5.4064 0.1248 33 1 5.1560 -6.9533 1.6874 34 1 5.4640 -9.3295 2.3392 35 1 4.2637 -11.0844 1.0504 36 1 2.8130 -10.4260 -0.8233 37 1 2.6990 -3.6091 0.4278 38 1 1.0550 -4.1885 0.0555 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048609844.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:32 Heat of formation + Delta-G solvation = 7.210852 kcal Electronic energy + Delta-G solvation = -21064.437218 eV Core-core repulsion = 17906.735792 eV Total energy + Delta-G solvation = -3157.701426 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.90138 -40.45416 -38.78395 -36.02878 -35.19773 -33.33990 -32.51695 -32.04652 -30.63600 -27.02128 -25.72072 -24.64427 -24.01301 -23.54882 -21.67751 -20.71134 -19.45795 -19.03357 -18.08442 -17.05197 -16.72079 -16.53950 -16.22571 -15.91520 -15.58252 -15.43074 -15.20845 -15.06650 -14.52429 -14.29946 -14.15733 -13.89081 -13.59243 -12.92207 -12.86286 -12.55779 -12.35141 -11.92521 -11.88956 -11.84466 -11.82011 -11.73627 -11.27419 -11.15549 -10.80755 -10.34712 -10.02423 -9.28256 -8.99411 -8.38145 -5.30848 0.11910 0.41499 1.56829 1.62506 1.69254 1.85082 1.88178 2.65949 2.96158 3.13778 3.29174 3.55672 3.70582 3.85739 3.96775 3.97826 4.15930 4.19567 4.25782 4.33968 4.40540 4.43963 4.61953 4.73668 4.79825 4.90533 4.99479 5.03261 5.07082 5.10855 5.21643 5.27350 5.32804 5.44882 5.84019 5.85752 6.14627 6.34379 6.94021 6.98948 7.30950 7.76671 8.21842 8.94380 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028672 B = 0.004168 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.328083 B = 6717.008020 C = 7388.615932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.068 4.068 3 Si 1.109 2.891 4 H -0.297 1.297 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.371 4.371 8 H 0.063 0.937 9 N -0.610 5.610 10 C 0.151 3.849 11 C -0.123 4.123 12 C -0.083 4.083 13 C -0.109 4.109 14 H 0.111 0.889 15 C 0.518 3.482 16 O -0.513 6.513 17 N -0.655 5.655 18 C 0.329 3.671 19 C -0.205 4.205 20 C -0.047 4.047 21 C -0.198 4.198 22 C 0.105 3.895 23 N -0.528 5.528 24 C 0.165 3.835 25 H 0.252 0.748 26 H -0.001 1.001 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.431 0.569 33 H 0.162 0.838 34 H 0.175 0.825 35 H 0.167 0.833 36 H 0.168 0.832 37 H 0.072 0.928 38 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.214 -16.431 1.489 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.266 4.266 3 Si 0.934 3.066 4 H -0.223 1.223 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.499 4.499 8 H 0.080 0.920 9 N -0.334 5.334 10 C 0.026 3.974 11 C -0.162 4.162 12 C -0.121 4.121 13 C -0.132 4.132 14 H 0.129 0.871 15 C 0.305 3.695 16 O -0.385 6.385 17 N -0.303 5.303 18 C 0.099 3.901 19 C -0.228 4.228 20 C -0.073 4.073 21 C -0.218 4.218 22 C -0.052 4.052 23 N -0.244 5.244 24 C 0.038 3.962 25 H 0.061 0.939 26 H 0.017 0.983 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.271 0.729 33 H 0.179 0.821 34 H 0.192 0.808 35 H 0.185 0.815 36 H 0.185 0.815 37 H 0.090 0.910 38 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 11.038 -15.076 0.330 18.688 hybrid contribution 0.322 -1.449 0.921 1.747 sum 11.360 -16.525 1.251 20.093 Atomic orbital electron populations 1.70951 1.08045 1.29070 1.48783 1.27074 0.96030 1.04801 0.98707 0.82935 0.74095 0.72080 0.77504 1.22307 1.20523 1.19862 1.20157 1.04792 0.91984 1.33009 0.91966 1.44335 1.53672 1.01380 1.34009 1.20874 0.90566 0.98606 0.87402 1.21936 1.01608 0.94988 0.97672 1.21140 0.97462 0.96252 0.97225 1.21718 1.01831 0.90342 0.99351 0.87086 1.21092 0.78258 0.91511 0.78667 1.90733 1.48580 1.50410 1.48792 1.43670 1.40727 1.06433 1.39431 1.18919 0.93666 0.85233 0.92272 1.21854 1.02664 1.00034 0.98265 1.21867 0.96132 0.90977 0.98347 1.22419 0.99391 1.02589 0.97439 1.23059 0.95541 0.91242 0.95376 1.67551 1.24179 1.01949 1.30683 1.20684 0.97018 0.85075 0.93374 0.93906 0.98307 0.93173 0.90447 0.91649 0.93539 0.91000 0.72932 0.82073 0.80764 0.81497 0.81503 0.90974 0.98004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.90 12.52 21.65 0.27 -55.63 16 2 C -0.07 -3.78 4.40 84.86 0.37 -3.40 16 3 Si 1.11 49.12 30.04 68.60 2.06 51.18 16 4 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 5 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 7 C -0.37 -19.89 9.42 84.03 0.79 -19.10 16 8 H 0.06 3.25 8.00 -2.91 -0.02 3.22 16 9 N -0.61 -29.80 2.90 -699.92 -2.03 -31.83 16 10 C 0.15 7.15 4.91 86.36 0.42 7.57 16 11 C -0.12 -4.59 6.08 30.67 0.19 -4.40 16 12 C -0.08 -2.95 4.46 30.62 0.14 -2.82 16 13 C -0.11 -3.76 2.66 -11.61 -0.03 -3.79 16 14 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 15 C 0.52 17.70 7.12 87.66 0.62 18.33 16 16 O -0.51 -21.05 14.25 -3.02 -0.04 -21.09 16 17 N -0.65 -18.00 5.27 -308.45 -1.63 -19.63 16 18 C 0.33 9.04 7.42 132.92 0.99 10.02 16 19 C -0.21 -3.84 9.94 22.49 0.22 -3.61 16 20 C -0.05 -0.67 10.17 22.44 0.23 -0.45 16 21 C -0.20 -3.05 10.11 22.37 0.23 -2.82 16 22 C 0.10 2.39 11.17 84.64 0.95 3.34 16 23 N -0.53 -16.63 7.89 -193.04 -1.52 -18.15 16 24 C 0.16 6.66 5.65 86.22 0.49 7.14 16 25 H 0.25 15.66 7.35 -92.71 -0.68 14.98 16 26 H 0.00 -0.05 8.08 -2.39 -0.02 -0.07 16 27 H 0.05 2.65 6.28 -2.39 -0.01 2.63 16 28 H 0.08 2.55 8.14 -2.39 -0.02 2.54 16 29 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 30 H 0.05 1.80 8.13 -2.39 -0.02 1.78 16 31 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 32 H 0.43 9.00 8.42 -92.71 -0.78 8.22 16 33 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 34 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 35 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 36 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 37 H 0.07 2.65 7.65 -2.39 -0.02 2.63 16 38 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 Total: -1.00 -74.70 314.46 3.08 -71.62 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.37 Total: 17.51 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 5.60 Total: 6.01 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -4.91 Total: -125.23 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.04 Total: -21.09 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 2.06 Total: 51.18 kcal Total: -74.70 3.08 -71.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048609844.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.829 kcal (2) G-P(sol) polarization free energy of solvation -74.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds