Wall clock time and date at job start Mon Mar 30 2020 01:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46825 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99373 * 269.99940 * 10 9 7 12 12 C 1.50701 * 109.47319 * 90.00401 * 11 10 9 13 13 C 1.38664 * 120.42099 * 89.99705 * 12 11 10 14 14 C 1.38627 * 118.42231 * 180.02562 * 13 12 11 15 15 C 1.38230 * 119.15781 * 359.97438 * 14 13 12 16 16 N 1.31845 * 120.76449 * 0.02562 * 15 14 13 17 17 C 1.31885 * 121.72630 * 359.69816 * 16 15 14 18 18 C 1.34770 * 119.99985 * 89.99806 * 10 9 7 19 19 O 1.21286 * 119.99615 * 180.02562 * 18 10 9 20 20 C 1.50696 * 120.00499 * 359.97438 * 18 10 9 21 21 H 1.08992 * 115.54788 * 325.72642 * 20 18 10 22 22 C 1.53003 * 117.49697 * 111.39173 * 20 18 10 23 23 C 1.52994 * 59.99927 * 107.49114 * 22 20 18 24 24 H 1.09009 * 117.49634 * 107.48787 * 23 22 20 25 25 N 1.46901 * 117.50143 * 252.50765 * 23 22 20 26 26 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 28 28 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 29 29 H 1.09010 * 109.46689 * 209.99917 * 11 10 9 30 30 H 1.09003 * 109.47452 * 329.99593 * 11 10 9 31 31 H 1.08005 * 120.78966 * 359.97438 * 13 12 11 32 32 H 1.08001 * 120.42328 * 179.97438 * 14 13 12 33 33 H 1.08002 * 119.61337 * 179.97438 * 15 14 13 34 34 H 1.08002 * 119.61552 * 180.31276 * 17 16 15 35 35 H 1.09009 * 117.49878 * 214.98477 * 22 20 18 36 36 H 1.09003 * 117.50234 * 359.97438 * 22 20 18 37 37 H 1.00902 * 110.99990 * 248.62595 * 25 23 22 38 38 H 1.00900 * 110.99736 * 12.57610 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 4.2436 -3.2660 1.2697 12 6 2.9876 -3.9765 1.7042 13 6 2.7480 -5.2838 1.3087 14 6 1.5791 -5.8974 1.7318 15 6 0.6979 -5.1908 2.5287 16 7 0.9587 -3.9486 2.8855 17 6 2.0629 -3.3353 2.5061 18 6 4.2250 -3.2103 -1.1662 19 8 4.6288 -4.3539 -1.1662 20 6 3.9738 -2.4999 -2.4713 21 1 3.1385 -1.7998 -2.4721 22 6 5.1904 -2.1494 -3.3303 23 6 4.2481 -3.2749 -3.7616 24 1 3.5929 -3.0847 -4.6119 25 7 4.7361 -4.6545 -3.6336 26 1 -0.4850 0.8400 -0.0004 27 1 3.8753 -0.6803 -0.8889 28 1 3.8746 -0.6799 0.8911 29 1 5.0456 -3.9927 1.1396 30 1 4.5315 -2.5394 2.0296 31 1 3.4547 -5.8112 0.6851 32 1 1.3597 -6.9145 1.4425 33 1 -0.2151 -5.6615 2.8622 34 1 2.2444 -2.3188 2.8225 35 1 5.1552 -1.2186 -3.8967 36 1 6.1725 -2.4321 -2.9514 37 1 4.8836 -5.0715 -4.5405 38 1 5.5775 -4.6903 -3.0779 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050457839.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:05 Heat of formation + Delta-G solvation = 38.930376 kcal Electronic energy + Delta-G solvation = -21695.234110 eV Core-core repulsion = 18538.908146 eV Total energy + Delta-G solvation = -3156.325964 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.92569 -39.16336 -36.66232 -35.05061 -32.81151 -31.97292 -31.16702 -30.50985 -28.11929 -26.29597 -23.45185 -22.98280 -22.25092 -21.54715 -20.97823 -18.06409 -17.10420 -17.01604 -16.45665 -15.83007 -15.48636 -15.22620 -15.02935 -14.31929 -13.87929 -13.76798 -13.28513 -13.14327 -12.75874 -12.65839 -12.41062 -12.33490 -12.03356 -11.75457 -11.66699 -11.37672 -11.12439 -10.79652 -10.64886 -10.26190 -10.01017 -9.61093 -9.29637 -9.02209 -8.89411 -8.70847 -8.40148 -8.05711 -7.74646 -6.16757 -4.18608 1.65123 1.88736 3.16331 3.17506 3.24992 3.27247 3.81281 4.22251 4.27947 4.48347 4.63978 5.01340 5.07392 5.14058 5.18709 5.27376 5.29283 5.43233 5.49750 5.60349 5.71235 5.80271 5.93905 6.04567 6.07212 6.15863 6.36312 6.41104 6.47127 6.63534 6.66689 6.86640 7.28031 7.28889 7.42145 7.46853 7.75297 8.13405 8.43368 8.58475 8.89815 8.98635 9.41517 10.95483 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.010557 B = 0.010110 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.531348 B = 2768.952814 C = 4733.408560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.078 3.922 3 Si 0.868 3.132 4 H -0.275 1.275 5 H -0.265 1.265 6 H -0.284 1.284 7 C -0.536 4.536 8 H 0.079 0.921 9 C 0.209 3.791 10 N -0.588 5.588 11 C 0.167 3.833 12 C -0.146 4.146 13 C -0.056 4.056 14 C -0.188 4.188 15 C 0.092 3.908 16 N -0.487 5.487 17 C 0.143 3.857 18 C 0.552 3.448 19 O -0.548 6.548 20 C -0.172 4.172 21 H 0.138 0.862 22 C -0.203 4.203 23 C 0.063 3.937 24 H 0.120 0.880 25 N -0.796 5.796 26 H 0.265 0.735 27 H 0.031 0.969 28 H 0.031 0.969 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.146 0.854 34 H 0.154 0.846 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.332 0.668 38 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.481 -5.841 -1.848 11.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.126 4.126 3 Si 0.694 3.306 4 H -0.201 1.201 5 H -0.189 1.189 6 H -0.210 1.210 7 C -0.574 4.574 8 H 0.097 0.903 9 C 0.087 3.913 10 N -0.318 5.318 11 C 0.043 3.957 12 C -0.149 4.149 13 C -0.082 4.082 14 C -0.208 4.208 15 C -0.065 4.065 16 N -0.196 5.196 17 C -0.014 4.014 18 C 0.340 3.660 19 O -0.427 6.427 20 C -0.194 4.194 21 H 0.156 0.844 22 C -0.244 4.244 23 C -0.051 4.051 24 H 0.138 0.862 25 N -0.326 5.326 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.151 0.849 32 H 0.143 0.857 33 H 0.163 0.837 34 H 0.171 0.829 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.144 0.856 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.248 -6.025 -0.930 10.256 hybrid contribution 1.366 1.165 -1.049 2.079 sum 9.614 -4.860 -1.979 10.953 Atomic orbital electron populations 1.69906 1.06181 1.26987 1.49225 1.24878 0.94644 0.98650 0.94455 0.86992 0.80439 0.84367 0.78753 1.20069 1.18948 1.20996 1.21357 0.88869 0.94940 1.52275 0.90328 1.19849 0.96087 0.77845 0.97483 1.47907 1.64427 1.15415 1.04003 1.20089 0.93494 0.95949 0.86141 1.21180 0.99550 0.94972 0.99245 1.21532 0.96605 0.94330 0.95754 1.22006 0.96225 1.01393 1.01178 1.22634 0.98387 0.90671 0.94797 1.67677 1.19178 1.09568 1.23147 1.22626 0.87839 0.98691 0.92265 1.19432 0.76608 0.85644 0.84308 1.90554 1.47483 1.17398 1.87249 1.22613 1.01883 1.04262 0.90670 0.84422 1.23628 0.94499 1.01993 1.04279 1.22219 1.00078 0.86073 0.96696 0.86226 1.58344 1.39939 1.15381 1.18927 0.92471 0.95089 0.95062 0.89965 0.90082 0.84884 0.85686 0.83690 0.82898 0.88290 0.89033 0.85592 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.96 55.43 0.77 -25.06 16 2 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 19.59 27.47 -169.99 -4.67 14.93 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.54 -13.78 9.10 -34.44 -0.31 -14.10 16 8 H 0.08 2.35 7.84 -52.49 -0.41 1.94 16 9 C 0.21 4.46 3.92 -5.19 -0.02 4.44 16 10 N -0.59 -11.56 2.44 -176.43 -0.43 -11.99 16 11 C 0.17 2.91 5.60 -5.19 -0.03 2.88 16 12 C -0.15 -2.73 5.48 -104.49 -0.57 -3.30 16 13 C -0.06 -0.99 9.86 -39.28 -0.39 -1.38 16 14 C -0.19 -3.09 10.11 -39.44 -0.40 -3.49 16 15 C 0.09 1.61 11.18 -17.55 -0.20 1.41 16 16 N -0.49 -9.92 10.36 -13.25 -0.14 -10.06 16 17 C 0.14 2.86 10.10 -17.55 -0.18 2.68 16 18 C 0.55 10.84 7.45 -10.99 -0.08 10.76 16 19 O -0.55 -11.08 13.17 5.55 0.07 -11.01 16 20 C -0.17 -3.06 4.80 -91.77 -0.44 -3.51 16 21 H 0.14 2.72 6.99 -51.93 -0.36 2.36 16 22 C -0.20 -2.83 9.93 -26.73 -0.27 -3.10 16 23 C 0.06 0.93 7.20 -67.72 -0.49 0.44 16 24 H 0.12 1.56 8.14 -51.92 -0.42 1.14 16 25 N -0.80 -11.52 8.48 -4.67 -0.04 -11.56 16 26 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.03 0.65 6.07 -51.93 -0.32 0.33 16 28 H 0.03 0.65 6.95 -51.93 -0.36 0.29 16 29 H 0.08 1.35 7.38 -51.92 -0.38 0.96 16 30 H 0.08 1.25 7.84 -51.93 -0.41 0.84 16 31 H 0.13 2.33 7.69 -52.48 -0.40 1.92 16 32 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 34 H 0.15 3.03 8.06 -52.49 -0.42 2.61 16 35 H 0.10 1.21 8.14 -51.92 -0.42 0.79 16 36 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 37 H 0.33 3.76 9.08 -39.29 -0.36 3.40 16 38 H 0.35 5.22 7.30 -39.29 -0.29 4.94 16 LS Contribution 320.83 15.07 4.83 4.83 Total: -1.00 -31.05 320.83 -8.05 -39.11 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -4.99 Total: 15.08 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -3.47 Total: -4.27 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.17 Total: -58.67 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.07 Total: -11.01 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.67 Total: 14.93 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.05 -8.05 -39.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050457839.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.036 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds