Wall clock time and date at job start Mon Mar 30 2020 01:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46825 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99373 * 269.99940 * 10 9 7 12 12 C 1.50701 * 109.47319 * 90.00401 * 11 10 9 13 13 C 1.38664 * 120.42099 * 89.99705 * 12 11 10 14 14 C 1.38627 * 118.42231 * 180.02562 * 13 12 11 15 15 C 1.38230 * 119.15781 * 359.97438 * 14 13 12 16 16 N 1.31845 * 120.76449 * 0.02562 * 15 14 13 17 17 C 1.31885 * 121.72630 * 359.69816 * 16 15 14 18 18 C 1.34770 * 119.99985 * 89.99806 * 10 9 7 19 19 O 1.21286 * 119.99615 * 180.02562 * 18 10 9 20 20 C 1.50696 * 120.00499 * 359.97438 * 18 10 9 21 21 H 1.08992 * 115.54788 * 325.72642 * 20 18 10 22 22 C 1.53003 * 117.49697 * 111.39173 * 20 18 10 23 23 C 1.52994 * 59.99927 * 107.49114 * 22 20 18 24 24 H 1.09009 * 117.49634 * 107.48787 * 23 22 20 25 25 N 1.46901 * 117.50143 * 252.50765 * 23 22 20 26 26 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 28 28 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 29 29 H 1.09010 * 109.46689 * 209.99917 * 11 10 9 30 30 H 1.09003 * 109.47452 * 329.99593 * 11 10 9 31 31 H 1.08005 * 120.78966 * 359.97438 * 13 12 11 32 32 H 1.08001 * 120.42328 * 179.97438 * 14 13 12 33 33 H 1.08002 * 119.61337 * 179.97438 * 15 14 13 34 34 H 1.08002 * 119.61552 * 180.31276 * 17 16 15 35 35 H 1.09009 * 117.49878 * 214.98477 * 22 20 18 36 36 H 1.09003 * 117.50234 * 359.97438 * 22 20 18 37 37 H 1.00902 * 110.99990 * 248.62595 * 25 23 22 38 38 H 1.00900 * 110.99736 * 12.57610 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 4.2436 -3.2660 1.2697 12 6 2.9876 -3.9765 1.7042 13 6 2.7480 -5.2838 1.3087 14 6 1.5791 -5.8974 1.7318 15 6 0.6979 -5.1908 2.5287 16 7 0.9587 -3.9486 2.8855 17 6 2.0629 -3.3353 2.5061 18 6 4.2250 -3.2103 -1.1662 19 8 4.6288 -4.3539 -1.1662 20 6 3.9738 -2.4999 -2.4713 21 1 3.1385 -1.7998 -2.4721 22 6 5.1904 -2.1494 -3.3303 23 6 4.2481 -3.2749 -3.7616 24 1 3.5929 -3.0847 -4.6119 25 7 4.7361 -4.6545 -3.6336 26 1 -0.4850 0.8400 -0.0004 27 1 3.8753 -0.6803 -0.8889 28 1 3.8746 -0.6799 0.8911 29 1 5.0456 -3.9927 1.1396 30 1 4.5315 -2.5394 2.0296 31 1 3.4547 -5.8112 0.6851 32 1 1.3597 -6.9145 1.4425 33 1 -0.2151 -5.6615 2.8622 34 1 2.2444 -2.3188 2.8225 35 1 5.1552 -1.2186 -3.8967 36 1 6.1725 -2.4321 -2.9514 37 1 4.8836 -5.0715 -4.5405 38 1 5.5775 -4.6903 -3.0779 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050457839.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:05 Heat of formation + Delta-G solvation = 17.507916 kcal Electronic energy + Delta-G solvation = -21696.163058 eV Core-core repulsion = 18538.908146 eV Total energy + Delta-G solvation = -3157.254912 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.37302 -40.57809 -37.97282 -36.61465 -34.66418 -33.57083 -32.57211 -31.72182 -29.92499 -27.75160 -24.95820 -24.45353 -23.96544 -22.80039 -22.24887 -19.55775 -19.02906 -18.43478 -17.90113 -17.21963 -16.99866 -16.63364 -16.53923 -15.94081 -15.25120 -15.19162 -14.68543 -14.56701 -14.46433 -14.11871 -13.89598 -13.81816 -13.58825 -13.24778 -13.03296 -12.87184 -12.50193 -12.37921 -12.16755 -11.96039 -11.64590 -11.24209 -10.78194 -10.73926 -10.48570 -10.37115 -9.84743 -9.35661 -9.18472 -8.22549 -6.28542 0.22972 0.44389 1.40257 1.42448 1.51264 1.73043 2.36027 2.37591 2.97942 3.03765 3.12013 3.50261 3.64737 3.73382 3.96512 3.98621 4.03354 4.10742 4.15031 4.20381 4.41430 4.53960 4.66441 4.75261 4.80908 4.83483 4.90129 4.95096 4.99146 5.11124 5.24845 5.43119 5.50216 5.74782 5.87376 6.24647 6.32435 6.64865 6.76766 6.81302 7.13373 7.33211 7.47775 8.93710 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.010557 B = 0.010110 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.531348 B = 2768.952814 C = 4733.408560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.017 3.983 3 Si 0.938 3.062 4 H -0.264 1.264 5 H -0.236 1.236 6 H -0.292 1.292 7 C -0.519 4.519 8 H 0.024 0.976 9 C 0.218 3.782 10 N -0.593 5.593 11 C 0.164 3.836 12 C -0.152 4.152 13 C -0.066 4.066 14 C -0.179 4.179 15 C 0.081 3.919 16 N -0.520 5.520 17 C 0.121 3.879 18 C 0.545 3.455 19 O -0.557 6.557 20 C -0.212 4.212 21 H 0.111 0.889 22 C -0.172 4.172 23 C 0.071 3.929 24 H 0.137 0.863 25 N -0.809 5.809 26 H 0.264 0.736 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.138 0.862 32 H 0.161 0.839 33 H 0.176 0.824 34 H 0.143 0.857 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.350 0.650 38 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.654 -5.854 -2.801 13.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.181 4.181 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.159 1.159 6 H -0.218 1.218 7 C -0.558 4.558 8 H 0.043 0.957 9 C 0.096 3.904 10 N -0.322 5.322 11 C 0.041 3.959 12 C -0.155 4.155 13 C -0.093 4.093 14 C -0.199 4.199 15 C -0.076 4.076 16 N -0.229 5.229 17 C -0.036 4.036 18 C 0.335 3.665 19 O -0.437 6.437 20 C -0.234 4.234 21 H 0.129 0.871 22 C -0.212 4.212 23 C -0.043 4.043 24 H 0.154 0.846 25 N -0.340 5.340 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.155 0.845 32 H 0.179 0.821 33 H 0.193 0.807 34 H 0.160 0.840 35 H 0.139 0.861 36 H 0.118 0.882 37 H 0.165 0.835 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.462 -6.066 -1.895 12.241 hybrid contribution 0.617 0.988 -0.771 1.397 sum 11.079 -5.078 -2.666 12.475 Atomic orbital electron populations 1.70091 1.08494 1.27898 1.51918 1.25771 0.95297 1.02889 0.94177 0.85869 0.79879 0.78739 0.79431 1.18894 1.15899 1.21848 1.21393 0.91093 0.92657 1.50674 0.95717 1.19656 0.92943 0.79362 0.98488 1.47931 1.64397 1.14945 1.04955 1.20274 0.93206 0.96602 0.85841 1.21299 0.99776 0.95499 0.98911 1.21725 0.97398 0.94221 0.95946 1.22390 0.95058 1.02780 0.99636 1.23197 0.99705 0.89911 0.94745 1.67620 1.19664 1.11210 1.24378 1.22567 0.88675 0.98683 0.93660 1.19816 0.76171 0.85689 0.84850 1.90535 1.48048 1.17602 1.87497 1.22557 1.03555 1.06041 0.91243 0.87057 1.23694 0.93267 1.02496 1.01723 1.22345 1.00373 0.86514 0.95097 0.84577 1.58240 1.39961 1.15494 1.20333 0.92719 0.93673 0.93667 0.88753 0.88235 0.84453 0.82099 0.80658 0.83991 0.86090 0.88233 0.83516 0.83254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.17 13.96 21.45 0.30 -56.87 16 2 C 0.02 0.92 5.47 84.65 0.46 1.38 16 3 Si 0.94 40.02 27.47 68.60 1.88 41.90 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 5 H -0.24 -8.90 6.54 99.48 0.65 -8.25 16 6 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.52 -27.32 9.10 25.60 0.23 -27.09 16 8 H 0.02 1.54 7.84 -2.91 -0.02 1.52 16 9 C 0.22 9.11 3.92 85.63 0.34 9.44 16 10 N -0.59 -22.93 2.44 -830.48 -2.03 -24.95 16 11 C 0.16 5.60 5.60 85.63 0.48 6.08 16 12 C -0.15 -5.71 5.48 -19.78 -0.11 -5.82 16 13 C -0.07 -2.33 9.86 22.46 0.22 -2.11 16 14 C -0.18 -5.67 10.11 22.36 0.23 -5.45 16 15 C 0.08 2.80 11.18 84.69 0.95 3.75 16 16 N -0.52 -21.71 10.36 -195.84 -2.03 -23.74 16 17 C 0.12 5.00 10.10 84.67 0.86 5.86 16 18 C 0.55 20.98 7.45 87.66 0.65 21.64 16 19 O -0.56 -21.92 13.17 -3.05 -0.04 -21.96 16 20 C -0.21 -7.29 4.80 -11.54 -0.06 -7.35 16 21 H 0.11 4.41 6.99 -2.39 -0.02 4.40 16 22 C -0.17 -4.26 9.93 30.59 0.30 -3.96 16 23 C 0.07 1.93 7.20 44.91 0.32 2.25 16 24 H 0.14 3.22 8.14 -2.38 -0.02 3.20 16 25 N -0.81 -21.75 8.48 -168.68 -1.43 -23.18 16 26 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 27 H 0.05 1.80 6.07 -2.39 -0.01 1.78 16 28 H 0.05 1.79 6.95 -2.39 -0.02 1.77 16 29 H 0.09 2.98 7.38 -2.38 -0.02 2.96 16 30 H 0.10 2.96 7.84 -2.39 -0.02 2.94 16 31 H 0.14 4.68 7.69 -2.91 -0.02 4.66 16 32 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 33 H 0.18 4.76 8.06 -2.91 -0.02 4.73 16 34 H 0.14 5.95 8.06 -2.91 -0.02 5.92 16 35 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 36 H 0.10 2.35 8.09 -2.39 -0.02 2.33 16 37 H 0.35 7.09 9.08 -89.69 -0.81 6.28 16 38 H 0.35 9.68 7.30 -89.69 -0.65 9.03 16 Total: -1.00 -69.55 320.83 1.10 -68.45 By element: Atomic # 1 Polarization: 42.15 SS G_CDS: -0.43 Total: 41.71 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 4.88 Total: -1.37 kcal Atomic # 7 Polarization: -123.56 SS G_CDS: -5.19 Total: -128.74 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.04 Total: -21.96 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 1.88 Total: 41.90 kcal Total: -69.55 1.10 -68.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050457839.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.957 kcal (2) G-P(sol) polarization free energy of solvation -69.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds