Wall clock time and date at job start Mon Mar 30 2020 01:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00169 * 2 1 4 4 C 1.50700 * 109.47410 * 180.02562 * 3 2 1 5 5 C 1.38373 * 119.84751 * 269.73090 * 4 3 2 6 6 C 1.37938 * 120.15137 * 179.72063 * 5 4 3 7 7 C 1.39651 * 119.84532 * 0.56926 * 6 5 4 8 8 C 1.47728 * 120.14960 * 179.68532 * 7 6 5 9 9 O 1.21597 * 119.99946 * 143.34293 * 8 7 6 10 10 N 1.34773 * 120.00000 * 323.33766 * 8 7 6 11 11 C 1.36874 * 119.99737 * 3.82444 * 10 8 7 12 12 H 1.08002 * 119.99942 * 302.22932 * 11 10 8 13 13 C 1.39048 * 120.00270 * 122.24138 * 11 10 8 14 14 N 1.31364 * 119.99861 * 355.47126 * 13 11 10 15 15 Si 1.86799 * 120.00338 * 175.47783 * 13 11 10 16 16 H 1.48502 * 109.46943 * 89.99447 * 15 13 11 17 17 H 1.48496 * 109.46975 * 209.99598 * 15 13 11 18 18 H 1.48503 * 109.46921 * 329.99502 * 15 13 11 19 19 C 1.46496 * 119.99934 * 183.81781 * 10 8 7 20 20 C 1.53009 * 117.49809 * 181.32449 * 19 10 8 21 21 C 1.53002 * 117.49675 * 112.66706 * 19 10 8 22 22 C 1.39640 * 119.69851 * 359.70034 * 7 6 5 23 23 C 1.37943 * 119.84672 * 0.02562 * 22 7 6 24 24 H 1.08994 * 109.47237 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46823 * 300.00383 * 1 2 3 26 26 H 1.09002 * 109.46936 * 59.99717 * 1 2 3 27 27 H 1.08998 * 109.47115 * 299.99754 * 3 2 1 28 28 H 1.08997 * 109.47278 * 60.00248 * 3 2 1 29 29 H 1.08004 * 119.92572 * 359.97438 * 5 4 3 30 30 H 1.08003 * 120.08088 * 180.25657 * 6 5 4 31 31 H 0.96996 * 120.00532 * 185.02713 * 14 13 11 32 32 H 1.08998 * 115.55211 * 326.99292 * 19 10 8 33 33 H 1.08999 * 117.49419 * 0.02562 * 20 19 10 34 34 H 1.08998 * 117.49980 * 145.02426 * 20 19 10 35 35 H 1.08998 * 117.49503 * 214.97885 * 21 19 10 36 36 H 1.08992 * 117.50068 * 359.97438 * 21 19 10 37 37 H 1.08000 * 120.07766 * 179.97438 * 22 7 6 38 38 H 1.07996 * 119.92479 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2000 1.1375 1.1992 6 6 5.5746 1.0228 1.2060 7 6 6.2734 0.9682 -0.0019 8 6 7.7462 0.8524 -0.0024 9 8 8.3027 0.1782 -0.8476 10 7 8.4729 1.4941 0.9337 11 6 7.8437 2.1889 1.9311 12 1 7.1576 2.9857 1.6843 13 6 8.0879 1.8692 3.2621 14 7 8.8526 0.8439 3.5616 15 14 7.3286 2.8974 4.6243 16 1 6.0044 2.3338 4.9903 17 1 8.2194 2.8805 5.8123 18 1 7.1585 4.2954 4.1530 19 6 9.9363 1.4479 0.8838 20 6 10.7042 2.1706 1.9926 21 6 10.6742 2.7527 0.5771 22 6 5.5737 1.0237 -1.2090 23 6 4.1986 1.1327 -1.2011 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 3.6588 1.1850 2.1327 30 1 6.1097 0.9806 2.1432 31 1 8.9644 0.5762 4.4872 32 1 10.3645 0.5241 0.4949 33 1 10.1204 2.6800 2.7593 34 1 11.6377 1.7224 2.3327 35 1 11.5881 2.6871 -0.0133 36 1 10.0709 3.6452 0.4120 37 1 6.1080 0.9823 -2.1467 38 1 3.6563 1.1762 -2.1340 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067686769.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:30 Heat of formation + Delta-G solvation = -16.074907 kcal Electronic energy + Delta-G solvation = -21177.450906 eV Core-core repulsion = 17986.446983 eV Total energy + Delta-G solvation = -3191.003923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.45694 -38.31491 -37.16578 -35.92902 -33.35782 -31.71524 -31.09219 -30.26168 -27.28867 -25.48146 -25.14176 -22.39653 -21.88310 -21.26675 -20.40699 -19.35530 -17.35035 -16.37827 -16.24016 -15.86000 -15.75049 -15.18169 -14.73757 -14.23107 -13.92635 -13.84936 -13.70425 -13.00158 -12.75404 -12.58924 -12.23358 -12.11985 -11.95955 -11.60102 -11.34000 -11.20633 -10.98809 -10.82090 -10.46700 -10.42223 -10.37370 -9.71176 -9.68099 -9.29825 -8.87586 -8.58803 -8.33003 -8.14035 -7.20734 -6.41907 -4.31863 1.55593 2.04061 3.04633 3.14575 3.16447 3.62719 3.98173 4.08755 4.50677 4.69960 4.81890 5.02298 5.08858 5.18592 5.26304 5.30040 5.38019 5.54990 5.57051 5.63131 5.89570 6.02592 6.06989 6.18440 6.21260 6.28166 6.48373 6.51008 6.67282 6.81972 6.94768 7.05687 7.09651 7.15230 7.27470 7.33559 7.37161 7.57612 8.07346 8.29111 8.94982 9.39251 9.86803 10.59543 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019791 B = 0.005758 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.460524 B = 4861.867058 C = 5929.772704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.106 3.894 4 C -0.093 4.093 5 C -0.122 4.122 6 C -0.061 4.061 7 C -0.084 4.084 8 C 0.528 3.472 9 O -0.594 6.594 10 N -0.409 5.409 11 C -0.349 4.349 12 H 0.084 0.916 13 C 0.055 3.945 14 N -0.845 5.845 15 Si 0.901 3.099 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.266 1.266 19 C 0.108 3.892 20 C -0.139 4.139 21 C -0.219 4.219 22 C -0.086 4.086 23 C -0.120 4.120 24 H 0.084 0.916 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.118 0.882 30 H 0.160 0.840 31 H 0.271 0.729 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.123 0.877 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.457 3.098 -2.199 11.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.030 3.970 4 C -0.093 4.093 5 C -0.141 4.141 6 C -0.079 4.079 7 C -0.087 4.087 8 C 0.318 3.682 9 O -0.480 6.480 10 N -0.127 5.127 11 C -0.477 4.477 12 H 0.101 0.899 13 C -0.153 4.153 14 N -0.478 5.478 15 Si 0.726 3.274 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.190 1.190 19 C 0.003 3.997 20 C -0.176 4.176 21 C -0.258 4.258 22 C -0.105 4.105 23 C -0.138 4.138 24 H 0.102 0.898 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.136 0.864 30 H 0.177 0.823 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.141 0.859 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.893 2.533 -2.407 10.492 hybrid contribution -0.572 0.748 0.898 1.301 sum -10.466 3.281 -1.508 11.071 Atomic orbital electron populations 1.22731 0.81559 1.02596 0.99740 1.88018 1.19100 1.27850 1.95332 1.21354 0.90558 0.84697 1.00395 1.19558 0.93164 1.02651 0.93941 1.21012 0.94556 1.01669 0.96815 1.22153 0.92965 0.92775 1.00015 1.20038 0.94146 1.00900 0.93605 1.18460 0.86429 0.80206 0.83097 1.90624 1.72812 1.43068 1.41465 1.42576 1.02329 1.44184 1.23561 1.19186 1.26933 1.16839 0.84788 0.89865 1.25625 0.95381 0.95615 0.98717 1.69936 1.34138 1.23923 1.19807 0.86327 0.79426 0.80803 0.80816 1.19665 1.20500 1.19037 1.21198 0.82196 0.93766 1.02510 1.22922 1.00189 1.02953 0.91579 1.23366 1.02086 0.99486 1.00844 1.21139 0.93552 0.98181 0.97597 1.20739 0.93897 1.02259 0.96903 0.89767 0.94210 0.94263 0.92786 0.92643 0.86434 0.82252 0.91818 0.87960 0.87362 0.90706 0.90394 0.89647 0.85857 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.43 10.69 -35.23 -0.38 -5.80 16 3 C 0.11 1.39 6.06 36.01 0.22 1.61 16 4 C -0.09 -1.52 5.52 -104.52 -0.58 -2.10 16 5 C -0.12 -2.18 9.68 -39.64 -0.38 -2.56 16 6 C -0.06 -1.27 8.19 -39.16 -0.32 -1.59 16 7 C -0.08 -1.87 5.49 -104.97 -0.58 -2.45 16 8 C 0.53 13.48 7.35 -12.38 -0.09 13.39 16 9 O -0.59 -16.42 16.65 5.28 0.09 -16.33 16 10 N -0.41 -10.30 2.69 -108.83 -0.29 -10.59 16 11 C -0.35 -8.45 5.16 -15.00 -0.08 -8.52 16 12 H 0.08 2.01 7.46 -52.49 -0.39 1.62 16 13 C 0.06 1.31 2.84 -17.45 -0.05 1.26 16 14 N -0.85 -21.22 11.45 55.50 0.64 -20.58 16 15 Si 0.90 18.34 29.56 -169.99 -5.02 13.31 16 16 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 C 0.11 2.59 5.57 -67.93 -0.38 2.21 16 20 C -0.14 -3.02 8.38 -26.69 -0.22 -3.24 16 21 C -0.22 -4.50 10.39 -26.69 -0.28 -4.78 16 22 C -0.09 -1.66 9.62 -39.17 -0.38 -2.04 16 23 C -0.12 -2.00 9.68 -39.64 -0.38 -2.38 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.12 1.85 8.06 -52.48 -0.42 1.42 16 30 H 0.16 3.61 5.28 -52.48 -0.28 3.33 16 31 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 32 H 0.10 2.54 7.80 -51.93 -0.40 2.14 16 33 H 0.11 2.52 5.52 -51.93 -0.29 2.24 16 34 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.12 2.31 8.03 -52.49 -0.42 1.89 16 38 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 320.81 15.07 4.83 4.83 Total: -1.00 -28.74 320.81 -7.66 -36.40 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.14 Total: 8.54 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.38 Total: -9.79 kcal Atomic # 7 Polarization: -31.51 SS G_CDS: 0.34 Total: -31.17 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.29 Total: -22.13 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.02 Total: 13.31 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.74 -7.66 -36.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686769.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.327 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds