Wall clock time and date at job start Mon Mar 30 2020 01:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00169 * 2 1 4 4 C 1.50700 * 109.47410 * 180.02562 * 3 2 1 5 5 C 1.38373 * 119.84751 * 269.73090 * 4 3 2 6 6 C 1.37938 * 120.15137 * 179.72063 * 5 4 3 7 7 C 1.39651 * 119.84532 * 0.56926 * 6 5 4 8 8 C 1.47728 * 120.14960 * 179.68532 * 7 6 5 9 9 O 1.21597 * 119.99946 * 143.34293 * 8 7 6 10 10 N 1.34773 * 120.00000 * 323.33766 * 8 7 6 11 11 C 1.36874 * 119.99737 * 3.82444 * 10 8 7 12 12 H 1.08002 * 119.99942 * 302.22932 * 11 10 8 13 13 C 1.39048 * 120.00270 * 122.24138 * 11 10 8 14 14 N 1.31364 * 119.99861 * 355.47126 * 13 11 10 15 15 Si 1.86799 * 120.00338 * 175.47783 * 13 11 10 16 16 H 1.48502 * 109.46943 * 89.99447 * 15 13 11 17 17 H 1.48496 * 109.46975 * 209.99598 * 15 13 11 18 18 H 1.48503 * 109.46921 * 329.99502 * 15 13 11 19 19 C 1.46496 * 119.99934 * 183.81781 * 10 8 7 20 20 C 1.53009 * 117.49809 * 181.32449 * 19 10 8 21 21 C 1.53002 * 117.49675 * 112.66706 * 19 10 8 22 22 C 1.39640 * 119.69851 * 359.70034 * 7 6 5 23 23 C 1.37943 * 119.84672 * 0.02562 * 22 7 6 24 24 H 1.08994 * 109.47237 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46823 * 300.00383 * 1 2 3 26 26 H 1.09002 * 109.46936 * 59.99717 * 1 2 3 27 27 H 1.08998 * 109.47115 * 299.99754 * 3 2 1 28 28 H 1.08997 * 109.47278 * 60.00248 * 3 2 1 29 29 H 1.08004 * 119.92572 * 359.97438 * 5 4 3 30 30 H 1.08003 * 120.08088 * 180.25657 * 6 5 4 31 31 H 0.96996 * 120.00532 * 185.02713 * 14 13 11 32 32 H 1.08998 * 115.55211 * 326.99292 * 19 10 8 33 33 H 1.08999 * 117.49419 * 0.02562 * 20 19 10 34 34 H 1.08998 * 117.49980 * 145.02426 * 20 19 10 35 35 H 1.08998 * 117.49503 * 214.97885 * 21 19 10 36 36 H 1.08992 * 117.50068 * 359.97438 * 21 19 10 37 37 H 1.08000 * 120.07766 * 179.97438 * 22 7 6 38 38 H 1.07996 * 119.92479 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2000 1.1375 1.1992 6 6 5.5746 1.0228 1.2060 7 6 6.2734 0.9682 -0.0019 8 6 7.7462 0.8524 -0.0024 9 8 8.3027 0.1782 -0.8476 10 7 8.4729 1.4941 0.9337 11 6 7.8437 2.1889 1.9311 12 1 7.1576 2.9857 1.6843 13 6 8.0879 1.8692 3.2621 14 7 8.8526 0.8439 3.5616 15 14 7.3286 2.8974 4.6243 16 1 6.0044 2.3338 4.9903 17 1 8.2194 2.8805 5.8123 18 1 7.1585 4.2954 4.1530 19 6 9.9363 1.4479 0.8838 20 6 10.7042 2.1706 1.9926 21 6 10.6742 2.7527 0.5771 22 6 5.5737 1.0237 -1.2090 23 6 4.1986 1.1327 -1.2011 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 3.6588 1.1850 2.1327 30 1 6.1097 0.9806 2.1432 31 1 8.9644 0.5762 4.4872 32 1 10.3645 0.5241 0.4949 33 1 10.1204 2.6800 2.7593 34 1 11.6377 1.7224 2.3327 35 1 11.5881 2.6871 -0.0133 36 1 10.0709 3.6452 0.4120 37 1 6.1080 0.9823 -2.1467 38 1 3.6563 1.1762 -2.1340 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067686769.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:30 Heat of formation + Delta-G solvation = -32.350943 kcal Electronic energy + Delta-G solvation = -21178.156688 eV Core-core repulsion = 17986.446983 eV Total energy + Delta-G solvation = -3191.709705 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.12982 -39.74678 -38.38535 -37.76112 -35.16680 -33.45405 -32.60914 -31.74463 -28.33147 -27.10033 -26.45730 -23.93471 -23.35803 -22.98435 -22.04157 -21.17503 -19.09302 -18.01321 -17.31968 -17.18254 -17.00245 -16.70434 -16.44680 -15.72294 -15.55388 -15.44292 -15.07820 -14.66836 -14.23577 -14.06904 -13.93186 -13.45917 -13.25943 -13.05651 -12.87708 -12.79472 -12.42524 -12.14038 -12.10969 -12.01605 -11.87040 -11.49331 -11.11305 -10.73966 -10.59074 -10.44158 -9.79862 -9.65574 -9.10463 -8.26063 -6.21909 0.06648 0.58124 1.42902 1.46996 1.56488 1.98924 2.28006 2.72271 2.88104 2.97829 3.28511 3.39905 3.93560 3.97019 4.15637 4.19505 4.24916 4.36480 4.38612 4.46139 4.48308 4.58143 4.62053 4.65712 4.83263 4.84943 4.91285 5.01057 5.06180 5.22773 5.28206 5.44883 5.49605 5.56493 5.64996 5.74687 6.08997 6.18733 6.27878 6.40313 7.07694 7.47778 7.97909 8.76702 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019791 B = 0.005758 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.460524 B = 4861.867058 C = 5929.772704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.107 3.893 4 C -0.083 4.083 5 C -0.121 4.121 6 C -0.075 4.075 7 C -0.117 4.117 8 C 0.509 3.491 9 O -0.633 6.633 10 N -0.415 5.415 11 C -0.353 4.353 12 H 0.081 0.919 13 C 0.027 3.973 14 N -0.878 5.878 15 Si 0.962 3.038 16 H -0.263 1.263 17 H -0.280 1.280 18 H -0.261 1.261 19 C 0.069 3.931 20 C -0.128 4.128 21 C -0.189 4.189 22 C -0.093 4.093 23 C -0.110 4.110 24 H 0.092 0.908 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.141 0.859 30 H 0.136 0.864 31 H 0.273 0.727 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.000 4.522 -2.001 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.031 3.969 4 C -0.084 4.084 5 C -0.139 4.139 6 C -0.093 4.093 7 C -0.120 4.120 8 C 0.300 3.700 9 O -0.522 6.522 10 N -0.131 5.131 11 C -0.481 4.481 12 H 0.099 0.901 13 C -0.179 4.179 14 N -0.511 5.511 15 Si 0.785 3.215 16 H -0.188 1.188 17 H -0.205 1.205 18 H -0.185 1.185 19 C -0.036 4.036 20 C -0.165 4.165 21 C -0.228 4.228 22 C -0.112 4.112 23 C -0.128 4.128 24 H 0.111 0.889 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.158 0.842 30 H 0.154 0.846 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.140 0.860 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.446 3.977 -2.201 13.250 hybrid contribution 0.141 0.261 0.791 0.845 sum -12.305 4.239 -1.410 13.091 Atomic orbital electron populations 1.22951 0.79233 1.03740 1.01209 1.87957 1.21633 1.28236 1.95664 1.21406 0.87820 0.84977 1.02660 1.20003 0.95519 0.99844 0.93006 1.21240 0.93221 1.00735 0.98706 1.21919 0.94394 0.94518 0.98484 1.19956 0.92410 1.04257 0.95396 1.19148 0.88151 0.79822 0.82830 1.90559 1.73950 1.44791 1.42927 1.42796 1.02896 1.43761 1.23628 1.19249 1.27142 1.16681 0.85007 0.90110 1.26228 0.95298 0.96161 1.00203 1.70049 1.35387 1.25456 1.20256 0.85398 0.78831 0.79466 0.77854 1.18756 1.20546 1.18460 1.21305 0.82264 0.94712 1.05291 1.22835 0.99950 1.02235 0.91490 1.23379 1.02136 0.97207 1.00055 1.21247 0.94963 0.98526 0.96509 1.21106 0.92609 1.00272 0.98765 0.88939 0.92905 0.92570 0.90193 0.90798 0.84169 0.84612 0.91759 0.90093 0.88804 0.89253 0.87475 0.89725 0.86037 0.82925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -10.26 10.69 -148.98 -1.59 -11.86 16 3 C 0.11 2.37 6.06 71.24 0.43 2.80 16 4 C -0.08 -2.50 5.52 -19.80 -0.11 -2.61 16 5 C -0.12 -4.13 9.68 22.23 0.22 -3.92 16 6 C -0.07 -3.17 8.19 22.54 0.18 -2.99 16 7 C -0.12 -5.40 5.49 -20.09 -0.11 -5.51 16 8 C 0.51 27.36 7.35 86.75 0.64 27.99 16 9 O -0.63 -37.08 16.65 -4.02 -0.07 -37.15 16 10 N -0.41 -21.74 2.69 -616.49 -1.66 -23.39 16 11 C -0.35 -17.50 5.16 84.10 0.43 -17.07 16 12 H 0.08 3.98 7.46 -2.91 -0.02 3.96 16 13 C 0.03 1.30 2.84 84.96 0.24 1.54 16 14 N -0.88 -45.09 11.45 21.68 0.25 -44.84 16 15 Si 0.96 37.41 29.56 68.60 2.03 39.44 16 16 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 17 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 18 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 19 C 0.07 3.42 5.57 45.00 0.25 3.67 16 20 C -0.13 -5.58 8.38 30.62 0.26 -5.32 16 21 C -0.19 -7.71 10.39 30.62 0.32 -7.39 16 22 C -0.09 -3.64 9.62 22.54 0.22 -3.42 16 23 C -0.11 -3.41 9.68 22.23 0.22 -3.19 16 24 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16 28 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 29 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 30 H 0.14 6.35 5.28 -2.91 -0.02 6.34 16 31 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 32 H 0.08 4.27 7.80 -2.39 -0.02 4.25 16 33 H 0.09 4.40 5.52 -2.39 -0.01 4.39 16 34 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 35 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 36 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 37 H 0.12 4.66 8.03 -2.91 -0.02 4.63 16 38 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -64.75 320.81 4.45 -60.30 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 1.06 Total: 31.28 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 4.43 Total: -13.78 kcal Atomic # 7 Polarization: -66.82 SS G_CDS: -1.41 Total: -68.23 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -1.66 Total: -49.00 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.44 kcal Total: -64.75 4.45 -60.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686769.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.951 kcal (2) G-P(sol) polarization free energy of solvation -64.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds