Wall clock time and date at job start Mon Mar 30 2020 01:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42895 * 114.00125 * 2 1 4 4 C 1.50706 * 109.47248 * 180.02562 * 3 2 1 5 5 C 1.38408 * 119.92110 * 270.25491 * 4 3 2 6 6 C 1.38352 * 120.30074 * 180.25792 * 5 4 3 7 7 C 1.37956 * 120.15121 * 359.48367 * 6 5 4 8 8 C 1.39629 * 119.84974 * 0.25797 * 7 6 5 9 9 C 1.47719 * 120.15285 * 179.97438 * 8 7 6 10 10 O 1.21597 * 120.00187 * 138.84505 * 9 8 7 11 11 N 1.34779 * 120.00411 * 318.85054 * 9 8 7 12 12 C 1.36872 * 120.00470 * 184.57151 * 11 9 8 13 13 H 1.07993 * 119.99834 * 224.30254 * 12 11 9 14 14 C 1.39044 * 119.99738 * 44.29757 * 12 11 9 15 15 N 1.31360 * 120.00622 * 9.62502 * 14 12 11 16 16 Si 1.86810 * 119.99620 * 189.62495 * 14 12 11 17 17 H 1.48497 * 109.46981 * 90.00379 * 16 14 12 18 18 H 1.48498 * 109.46673 * 210.00007 * 16 14 12 19 19 H 1.48493 * 109.47015 * 329.99981 * 16 14 12 20 20 C 1.46504 * 119.99638 * 4.56479 * 11 9 8 21 21 C 1.52998 * 117.49709 * 185.60899 * 20 11 9 22 22 C 1.53001 * 60.00205 * 252.51077 * 21 20 11 23 23 C 1.37911 * 119.92495 * 89.99799 * 4 3 2 24 24 H 1.09005 * 109.47175 * 60.00231 * 1 2 3 25 25 H 1.09005 * 109.47723 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47841 * 300.00113 * 1 2 3 27 27 H 1.09001 * 109.47015 * 60.00098 * 3 2 1 28 28 H 1.09004 * 109.47327 * 299.99763 * 3 2 1 29 29 H 1.07998 * 119.84518 * 0.02562 * 5 4 3 30 30 H 1.07999 * 119.92543 * 179.76711 * 6 5 4 31 31 H 1.08008 * 120.07793 * 180.27985 * 7 6 5 32 32 H 0.96998 * 120.00312 * 184.99066 * 15 14 12 33 33 H 1.08999 * 115.55119 * 331.32181 * 20 11 9 34 34 H 1.08998 * 117.50097 * 0.02562 * 21 20 11 35 35 H 1.09009 * 117.49893 * 145.02143 * 21 20 11 36 36 H 1.08988 * 117.50100 * 252.51103 * 22 21 20 37 37 H 1.09001 * 117.51171 * 107.48052 * 22 21 20 38 38 H 1.07997 * 120.07821 * 0.02605 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2008 1.1263 1.1987 6 6 5.5804 1.0224 1.2073 7 6 6.2785 0.9672 0.0187 8 6 5.5901 1.0219 -1.1949 9 6 6.3310 0.9640 -2.4715 10 8 5.8984 0.3032 -3.3961 11 7 7.4866 1.6433 -2.6115 12 6 8.1249 1.6660 -3.8221 13 1 9.1941 1.5226 -3.8716 14 6 7.3965 1.8735 -4.9882 15 7 6.1353 2.2344 -4.9195 16 14 8.2116 1.6392 -6.6527 17 1 8.0424 0.2311 -7.0928 18 1 7.5813 2.5469 -7.6446 19 1 9.6588 1.9533 -6.5437 20 6 8.0596 2.3576 -1.4679 21 6 9.3001 3.2167 -1.7210 22 6 9.4267 1.8958 -0.9594 23 6 4.1978 1.1322 -1.1962 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3635 -1.0277 -0.0005 26 1 -0.3635 0.5138 0.8899 27 1 1.6885 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.6587 1.1646 2.1320 30 1 6.1116 0.9798 2.1466 31 1 7.3552 0.8816 0.0268 32 1 5.6073 2.3089 -5.7298 33 1 7.3421 2.7144 -0.7290 34 1 9.6896 3.2508 -2.7384 35 1 9.3988 4.1391 -1.1487 36 1 9.6088 1.9491 0.1139 37 1 9.8997 1.0603 -1.4755 38 1 3.6592 1.1754 -2.1313 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068231041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:34 Heat of formation + Delta-G solvation = -6.138872 kcal Electronic energy + Delta-G solvation = -21256.619335 eV Core-core repulsion = 18066.046270 eV Total energy + Delta-G solvation = -3190.573065 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.54200 -38.20732 -37.12490 -35.97995 -32.84118 -31.93507 -30.92645 -30.22451 -27.22887 -25.45921 -24.99972 -22.87375 -21.76276 -21.57212 -20.65354 -19.41613 -16.99317 -16.34161 -16.14665 -15.83714 -15.80709 -15.09115 -14.75129 -14.37415 -14.28079 -13.69138 -13.54673 -12.99170 -12.89862 -12.36875 -12.21206 -12.10487 -11.81455 -11.39647 -11.26734 -10.95307 -10.93514 -10.82860 -10.75437 -10.53430 -10.18950 -9.92461 -9.72898 -9.67273 -8.76151 -8.46405 -8.35787 -7.99281 -7.05287 -6.07929 -3.92158 1.54713 1.76129 3.30650 3.36374 3.38352 3.68120 4.19959 4.23864 4.44416 4.77702 4.89716 5.00633 5.12440 5.25165 5.26940 5.33772 5.38046 5.41638 5.51305 5.58930 5.60647 5.65910 5.74685 5.86440 5.98257 6.06067 6.20395 6.29707 6.45054 6.46232 6.72778 6.79455 6.88889 6.93170 7.03065 7.16788 7.36085 7.59344 8.25346 9.04049 9.15352 9.61501 10.28356 10.97107 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018911 B = 0.005778 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.228686 B = 4844.813471 C = 6054.356321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.107 3.893 4 C -0.107 4.107 5 C -0.100 4.100 6 C -0.135 4.135 7 C -0.097 4.097 8 C -0.094 4.094 9 C 0.518 3.482 10 O -0.522 6.522 11 N -0.420 5.420 12 C -0.337 4.337 13 H 0.080 0.920 14 C 0.063 3.937 15 N -0.831 5.831 16 Si 0.914 3.086 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.070 3.930 21 C -0.176 4.176 22 C -0.209 4.209 23 C -0.051 4.051 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.134 0.866 32 H 0.265 0.735 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 1.278 12.276 13.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.031 3.969 4 C -0.107 4.107 5 C -0.118 4.118 6 C -0.153 4.153 7 C -0.116 4.116 8 C -0.098 4.098 9 C 0.306 3.694 10 O -0.399 6.399 11 N -0.140 5.140 12 C -0.464 4.464 13 H 0.098 0.902 14 C -0.148 4.148 15 N -0.465 5.465 16 Si 0.741 3.259 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.036 4.036 21 C -0.214 4.214 22 C -0.249 4.249 23 C -0.070 4.070 24 H 0.060 0.940 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.151 0.849 32 H 0.075 0.925 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.858 0.880 11.632 12.636 hybrid contribution 0.096 0.241 -0.761 0.804 sum -4.762 1.121 10.871 11.921 Atomic orbital electron populations 1.22733 0.81451 1.02628 0.99793 1.88005 1.19213 1.27754 1.95345 1.21322 0.90170 0.84816 1.00601 1.19421 0.93604 1.04151 0.93537 1.20974 0.94307 0.99700 0.96865 1.20981 0.94013 1.02532 0.97788 1.21701 1.00587 0.97736 0.91588 1.20569 0.94163 0.99987 0.95078 1.17719 0.83170 0.82490 0.86009 1.90620 1.67155 1.41608 1.40558 1.42623 1.21202 1.42614 1.07567 1.18925 0.93072 1.52121 0.82259 0.90237 1.25303 0.95579 0.94366 0.99510 1.69818 1.07414 1.39978 1.29309 0.86168 0.78978 0.78277 0.82510 1.20354 1.21162 1.19724 1.21966 0.88901 0.99338 0.93381 1.23115 1.02876 0.93303 1.02089 1.23356 1.03392 0.99156 0.98948 1.21132 0.93249 0.95121 0.97545 0.94045 0.89744 0.94314 0.92709 0.92360 0.86534 0.86107 0.84873 0.92466 0.87191 0.87507 0.89767 0.89638 0.88968 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.76 10.69 -35.23 -0.38 -6.13 16 3 C 0.11 1.50 6.06 36.01 0.22 1.72 16 4 C -0.11 -1.79 5.50 -104.68 -0.58 -2.36 16 5 C -0.10 -1.48 9.70 -39.48 -0.38 -1.86 16 6 C -0.14 -2.00 10.03 -39.64 -0.40 -2.40 16 7 C -0.10 -1.74 7.48 -39.17 -0.29 -2.03 16 8 C -0.09 -2.06 5.28 -104.97 -0.55 -2.62 16 9 C 0.52 13.81 6.45 -12.39 -0.08 13.73 16 10 O -0.52 -16.08 14.64 5.28 0.08 -16.01 16 11 N -0.42 -10.72 2.85 -108.83 -0.31 -11.03 16 12 C -0.34 -9.22 7.85 -15.00 -0.12 -9.34 16 13 H 0.08 2.09 7.32 -52.49 -0.38 1.71 16 14 C 0.06 1.77 4.66 -17.45 -0.08 1.68 16 15 N -0.83 -24.79 11.25 55.50 0.62 -24.17 16 16 Si 0.91 21.79 29.57 -169.99 -5.03 16.76 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C 0.07 1.42 4.39 -67.93 -0.30 1.13 16 21 C -0.18 -3.17 9.80 -26.73 -0.26 -3.44 16 22 C -0.21 -3.55 9.54 -26.73 -0.26 -3.80 16 23 C -0.05 -1.05 9.30 -39.17 -0.36 -1.41 16 24 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 28 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 29 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.13 2.26 5.54 -52.48 -0.29 1.97 16 32 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.11 2.09 5.87 -51.93 -0.30 1.78 16 34 H 0.11 2.12 6.79 -51.93 -0.35 1.77 16 35 H 0.08 1.29 8.14 -51.92 -0.42 0.86 16 36 H 0.09 1.18 8.14 -51.94 -0.42 0.76 16 37 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 38 H 0.13 2.80 8.06 -52.49 -0.42 2.38 16 LS Contribution 320.40 15.07 4.83 4.83 Total: -1.00 -33.70 320.40 -7.63 -41.32 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.11 Total: 3.99 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -2.33 Total: -9.58 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.31 Total: -35.19 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.30 Total: -22.14 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.70 -7.63 -41.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.184 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds