Wall clock time and date at job start Mon Mar 30 2020 01:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42895 * 114.00125 * 2 1 4 4 C 1.50706 * 109.47248 * 180.02562 * 3 2 1 5 5 C 1.38408 * 119.92110 * 270.25491 * 4 3 2 6 6 C 1.38352 * 120.30074 * 180.25792 * 5 4 3 7 7 C 1.37956 * 120.15121 * 359.48367 * 6 5 4 8 8 C 1.39629 * 119.84974 * 0.25797 * 7 6 5 9 9 C 1.47719 * 120.15285 * 179.97438 * 8 7 6 10 10 O 1.21597 * 120.00187 * 138.84505 * 9 8 7 11 11 N 1.34779 * 120.00411 * 318.85054 * 9 8 7 12 12 C 1.36872 * 120.00470 * 184.57151 * 11 9 8 13 13 H 1.07993 * 119.99834 * 224.30254 * 12 11 9 14 14 C 1.39044 * 119.99738 * 44.29757 * 12 11 9 15 15 N 1.31360 * 120.00622 * 9.62502 * 14 12 11 16 16 Si 1.86810 * 119.99620 * 189.62495 * 14 12 11 17 17 H 1.48497 * 109.46981 * 90.00379 * 16 14 12 18 18 H 1.48498 * 109.46673 * 210.00007 * 16 14 12 19 19 H 1.48493 * 109.47015 * 329.99981 * 16 14 12 20 20 C 1.46504 * 119.99638 * 4.56479 * 11 9 8 21 21 C 1.52998 * 117.49709 * 185.60899 * 20 11 9 22 22 C 1.53001 * 60.00205 * 252.51077 * 21 20 11 23 23 C 1.37911 * 119.92495 * 89.99799 * 4 3 2 24 24 H 1.09005 * 109.47175 * 60.00231 * 1 2 3 25 25 H 1.09005 * 109.47723 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47841 * 300.00113 * 1 2 3 27 27 H 1.09001 * 109.47015 * 60.00098 * 3 2 1 28 28 H 1.09004 * 109.47327 * 299.99763 * 3 2 1 29 29 H 1.07998 * 119.84518 * 0.02562 * 5 4 3 30 30 H 1.07999 * 119.92543 * 179.76711 * 6 5 4 31 31 H 1.08008 * 120.07793 * 180.27985 * 7 6 5 32 32 H 0.96998 * 120.00312 * 184.99066 * 15 14 12 33 33 H 1.08999 * 115.55119 * 331.32181 * 20 11 9 34 34 H 1.08998 * 117.50097 * 0.02562 * 21 20 11 35 35 H 1.09009 * 117.49893 * 145.02143 * 21 20 11 36 36 H 1.08988 * 117.50100 * 252.51103 * 22 21 20 37 37 H 1.09001 * 117.51171 * 107.48052 * 22 21 20 38 38 H 1.07997 * 120.07821 * 0.02605 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2008 1.1263 1.1987 6 6 5.5804 1.0224 1.2073 7 6 6.2785 0.9672 0.0187 8 6 5.5901 1.0219 -1.1949 9 6 6.3310 0.9640 -2.4715 10 8 5.8984 0.3032 -3.3961 11 7 7.4866 1.6433 -2.6115 12 6 8.1249 1.6660 -3.8221 13 1 9.1941 1.5226 -3.8716 14 6 7.3965 1.8735 -4.9882 15 7 6.1353 2.2344 -4.9195 16 14 8.2116 1.6392 -6.6527 17 1 8.0424 0.2311 -7.0928 18 1 7.5813 2.5469 -7.6446 19 1 9.6588 1.9533 -6.5437 20 6 8.0596 2.3576 -1.4679 21 6 9.3001 3.2167 -1.7210 22 6 9.4267 1.8958 -0.9594 23 6 4.1978 1.1322 -1.1962 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3635 -1.0277 -0.0005 26 1 -0.3635 0.5138 0.8899 27 1 1.6885 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.6587 1.1646 2.1320 30 1 6.1116 0.9798 2.1466 31 1 7.3552 0.8816 0.0268 32 1 5.6073 2.3089 -5.7298 33 1 7.3421 2.7144 -0.7290 34 1 9.6896 3.2508 -2.7384 35 1 9.3988 4.1391 -1.1487 36 1 9.6088 1.9491 0.1139 37 1 9.8997 1.0603 -1.4755 38 1 3.6592 1.1754 -2.1313 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068231041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:33 Heat of formation + Delta-G solvation = -28.353431 kcal Electronic energy + Delta-G solvation = -21257.582630 eV Core-core repulsion = 18066.046270 eV Total energy + Delta-G solvation = -3191.536360 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.11186 -39.64093 -38.33171 -37.75384 -34.83257 -33.38312 -32.61262 -31.77578 -28.29209 -27.23520 -26.19745 -24.52120 -23.15522 -23.03086 -22.13970 -21.19757 -18.68542 -17.92400 -17.39360 -17.18702 -17.05403 -16.67862 -16.24057 -15.96690 -15.79220 -15.28554 -14.94008 -14.67728 -14.50166 -13.81255 -13.53458 -13.47352 -13.12847 -13.01972 -12.86337 -12.74575 -12.44041 -12.28872 -12.23814 -12.06422 -11.95578 -11.53794 -11.25745 -10.79770 -10.66099 -10.11457 -9.79753 -9.63951 -9.04101 -8.18404 -6.07544 0.17988 0.39492 1.34944 1.41566 1.48095 2.20344 2.35055 2.75561 3.01546 3.09349 3.23942 3.42190 3.88294 3.89761 4.02769 4.12184 4.14969 4.25884 4.34149 4.41169 4.42791 4.51496 4.55514 4.59450 4.73018 4.84944 4.88762 4.95444 5.06548 5.09268 5.27361 5.42171 5.47754 5.48348 5.56927 5.62129 6.03738 6.16956 6.21551 6.97672 7.16737 7.60923 8.30376 8.85582 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018911 B = 0.005778 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.228686 B = 4844.813471 C = 6054.356321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.107 3.893 4 C -0.107 4.107 5 C -0.084 4.084 6 C -0.117 4.117 7 C -0.096 4.096 8 C -0.129 4.129 9 C 0.503 3.497 10 O -0.588 6.588 11 N -0.434 5.434 12 C -0.347 4.347 13 H 0.085 0.915 14 C 0.006 3.994 15 N -0.873 5.873 16 Si 0.977 3.023 17 H -0.289 1.289 18 H -0.281 1.281 19 H -0.248 1.248 20 C 0.037 3.963 21 C -0.172 4.172 22 C -0.177 4.177 23 C -0.079 4.079 24 H 0.042 0.958 25 H 0.095 0.905 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.163 0.837 30 H 0.171 0.829 31 H 0.142 0.858 32 H 0.258 0.742 33 H 0.125 0.875 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.076 0.924 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.820 1.958 16.323 16.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.335 6.335 3 C 0.031 3.969 4 C -0.108 4.108 5 C -0.102 4.102 6 C -0.134 4.134 7 C -0.115 4.115 8 C -0.133 4.133 9 C 0.293 3.707 10 O -0.471 6.471 11 N -0.153 5.153 12 C -0.475 4.475 13 H 0.102 0.898 14 C -0.199 4.199 15 N -0.508 5.508 16 Si 0.801 3.199 17 H -0.216 1.216 18 H -0.207 1.207 19 H -0.172 1.172 20 C -0.067 4.067 21 C -0.210 4.210 22 C -0.215 4.215 23 C -0.099 4.099 24 H 0.061 0.939 25 H 0.113 0.887 26 H 0.082 0.918 27 H 0.111 0.889 28 H 0.068 0.932 29 H 0.180 0.820 30 H 0.189 0.811 31 H 0.160 0.840 32 H 0.067 0.933 33 H 0.142 0.858 34 H 0.100 0.900 35 H 0.137 0.863 36 H 0.150 0.850 37 H 0.095 0.905 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.052 1.595 15.717 16.309 hybrid contribution -0.168 0.005 -1.866 1.873 sum -4.220 1.600 13.852 14.568 Atomic orbital electron populations 1.22960 0.79251 1.03853 1.01111 1.87944 1.21692 1.28243 1.95620 1.21383 0.88494 0.84945 1.02071 1.19731 0.95272 1.02924 0.92830 1.21520 0.94623 0.96635 0.97464 1.21494 0.94193 0.99512 0.98218 1.21788 1.01068 0.97554 0.91066 1.20285 0.94479 1.04076 0.94418 1.18591 0.83503 0.81421 0.87167 1.90541 1.68868 1.44349 1.43305 1.42834 1.21167 1.42754 1.08502 1.19236 0.93352 1.51261 0.83641 0.89768 1.26243 0.96040 0.94306 1.03354 1.69968 1.09056 1.42238 1.29577 0.85205 0.79310 0.77322 0.78086 1.21556 1.20698 1.17163 1.22211 0.90378 1.01543 0.92616 1.23190 1.00659 0.95407 1.01699 1.23392 0.99194 0.97685 1.01232 1.20986 0.93080 0.97942 0.97880 0.93889 0.88682 0.91776 0.88897 0.93182 0.81991 0.81145 0.84039 0.93255 0.85789 0.90010 0.86277 0.85014 0.90540 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 11.01 113.37 1.25 1.71 16 2 O -0.41 -11.94 10.69 -148.98 -1.59 -13.53 16 3 C 0.11 2.84 6.06 71.24 0.43 3.27 16 4 C -0.11 -3.47 5.50 -19.90 -0.11 -3.58 16 5 C -0.08 -2.11 9.70 22.34 0.22 -1.90 16 6 C -0.12 -2.90 10.03 22.23 0.22 -2.68 16 7 C -0.10 -3.26 7.48 22.54 0.17 -3.09 16 8 C -0.13 -5.86 5.28 -20.09 -0.11 -5.96 16 9 C 0.50 28.53 6.45 86.75 0.56 29.09 16 10 O -0.59 -39.34 14.64 -4.02 -0.06 -39.40 16 11 N -0.43 -22.99 2.85 -616.50 -1.76 -24.75 16 12 C -0.35 -19.80 7.85 84.10 0.66 -19.14 16 13 H 0.08 4.56 7.32 -2.91 -0.02 4.54 16 14 C 0.01 0.35 4.66 84.96 0.40 0.75 16 15 N -0.87 -55.63 11.25 21.68 0.24 -55.39 16 16 Si 0.98 46.69 29.57 68.60 2.03 48.72 16 17 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 19 H -0.25 -10.74 7.11 99.48 0.71 -10.03 16 20 C 0.04 1.48 4.39 44.99 0.20 1.68 16 21 C -0.17 -5.89 9.80 30.59 0.30 -5.59 16 22 C -0.18 -5.49 9.54 30.60 0.29 -5.19 16 23 C -0.08 -3.43 9.30 22.54 0.21 -3.22 16 24 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.09 1.58 8.14 -2.38 -0.02 1.57 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.09 1.74 8.09 -2.39 -0.02 1.73 16 28 H 0.05 1.37 8.08 -2.38 -0.02 1.35 16 29 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 31 H 0.14 4.46 5.54 -2.91 -0.02 4.44 16 32 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 33 H 0.12 4.53 5.87 -2.39 -0.01 4.52 16 34 H 0.08 3.23 6.79 -2.39 -0.02 3.21 16 35 H 0.12 3.22 8.14 -2.38 -0.02 3.20 16 36 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.09 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -82.23 320.40 4.61 -77.63 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 1.06 Total: 20.59 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 4.69 Total: -13.87 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -1.52 Total: -80.13 kcal Atomic # 8 Polarization: -51.28 SS G_CDS: -1.65 Total: -52.93 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -82.23 4.61 -77.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.273 kcal (2) G-P(sol) polarization free energy of solvation -82.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds