Wall clock time and date at job start Mon Mar 30 2020 01:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00248 * 2 1 4 4 C 1.53004 * 109.47092 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.50775 * 305.08776 * 4 3 2 6 6 C 1.53096 * 109.50447 * 185.00276 * 4 3 2 7 7 N 1.47016 * 109.25942 * 183.21372 * 6 4 3 8 8 C 1.46896 * 111.00332 * 182.38961 * 7 6 4 9 9 C 1.53004 * 109.46909 * 170.00193 * 8 7 6 10 10 C 1.53003 * 109.46715 * 180.02562 * 9 8 7 11 11 S 1.81006 * 109.46986 * 180.02562 * 10 9 8 12 12 C 1.76195 * 100.00146 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99957 * 359.97438 * 12 11 10 14 14 C 1.38799 * 119.99958 * 180.02562 * 12 11 10 15 15 N 1.31633 * 119.99906 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00220 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.46950 * 90.00107 * 16 14 12 18 18 H 1.48497 * 109.47318 * 210.00312 * 16 14 12 19 19 H 1.48503 * 109.46830 * 330.00389 * 16 14 12 20 20 C 1.47024 * 110.74959 * 58.61828 * 7 6 4 21 21 C 1.53100 * 109.25427 * 301.38569 * 20 7 6 22 22 O 1.43014 * 109.26048 * 56.85033 * 21 20 7 23 23 H 1.09005 * 109.47101 * 59.99363 * 1 2 3 24 24 H 1.09002 * 109.47386 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46946 * 299.99351 * 1 2 3 26 26 H 1.09003 * 109.46633 * 60.00939 * 3 2 1 27 27 H 1.08998 * 109.47673 * 300.00137 * 3 2 1 28 28 H 1.08999 * 109.51205 * 303.15477 * 6 4 3 29 29 H 1.09004 * 109.50767 * 63.28232 * 6 4 3 30 30 H 1.08997 * 109.47795 * 290.00655 * 8 7 6 31 31 H 1.09004 * 109.46972 * 50.01032 * 8 7 6 32 32 H 1.09002 * 109.47439 * 300.00065 * 9 8 7 33 33 H 1.08993 * 109.47075 * 60.00813 * 9 8 7 34 34 H 1.09006 * 109.47334 * 299.99971 * 10 9 8 35 35 H 1.08996 * 109.47557 * 60.00323 * 10 9 8 36 36 H 0.96994 * 120.00160 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.50322 * 181.45133 * 20 7 6 38 38 H 1.09002 * 109.53969 * 61.33941 * 20 7 6 39 39 H 1.09000 * 109.50921 * 296.90945 * 21 20 7 40 40 H 1.09001 * 109.53866 * 176.80729 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8520 0.5668 0.8399 6 6 4.1587 2.5772 0.1252 7 7 5.6222 2.4625 0.0466 8 6 6.2631 3.7728 0.2201 9 6 7.7729 3.5846 0.3819 10 6 8.4404 4.9494 0.5633 11 16 10.2265 4.7269 0.7540 12 6 10.7259 6.4062 0.9405 13 1 9.9885 7.1949 0.9147 14 6 12.0671 6.7156 1.1196 15 7 12.4402 7.9703 1.2584 16 14 13.3426 5.3516 1.1635 17 1 13.8413 5.0959 -0.2116 18 1 14.4749 5.7606 2.0328 19 1 12.7252 4.1140 1.7043 20 6 6.0286 1.8412 -1.2225 21 6 5.3865 0.4559 -1.3348 22 8 3.9664 0.5838 -1.2249 23 1 -0.3633 0.5140 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.6887 1.8462 0.8901 27 1 1.6887 1.8464 -0.8899 28 1 3.7992 3.2115 -0.6851 29 1 3.8790 3.0160 1.0830 30 1 6.0659 4.3926 -0.6546 31 1 5.8605 4.2594 1.1085 32 1 7.9702 2.9649 1.2567 33 1 8.1756 3.0981 -0.5064 34 1 8.2431 5.5694 -0.3113 35 1 8.0376 5.4357 1.4517 36 1 13.3774 8.1865 1.3840 37 1 7.1137 1.7427 -1.2483 38 1 5.6996 2.4634 -2.0548 39 1 5.7575 -0.1833 -0.5335 40 1 5.6387 0.0143 -2.2989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074991460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:36 Heat of formation + Delta-G solvation = -97.872712 kcal Electronic energy + Delta-G solvation = -18973.536566 eV Core-core repulsion = 15914.429575 eV Total energy + Delta-G solvation = -3059.106991 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.99427 -37.98716 -36.38464 -32.98691 -32.44570 -32.28322 -28.77089 -27.37567 -25.89211 -25.50458 -24.17193 -22.92851 -20.94363 -20.51152 -17.51148 -17.00761 -16.77860 -16.60875 -15.77207 -15.51233 -15.30369 -15.00608 -14.87373 -14.50744 -14.33121 -14.02485 -13.61004 -12.85945 -12.73943 -12.43884 -12.28616 -12.12656 -11.84053 -11.76574 -11.47165 -11.29861 -11.07557 -11.00198 -10.77871 -10.40103 -10.21938 -10.03324 -9.86622 -9.68507 -9.01329 -8.57521 -8.53752 -6.95246 -6.29142 -4.01510 2.97530 3.22581 3.29623 3.45157 3.46791 3.56917 3.82753 4.31064 4.63930 4.67972 4.76665 4.79757 4.82770 4.91129 4.98668 5.00494 5.06323 5.09497 5.12827 5.21600 5.29358 5.31773 5.35357 5.46592 5.55441 5.60981 5.64347 5.75515 5.82382 5.92484 6.19319 6.43769 6.59285 6.76338 6.80991 6.86496 7.00177 7.94627 8.43320 9.16718 10.80335 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.052871 B = 0.002730 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.468208 B =10255.212024 C =10571.029303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.070 3.930 4 C 0.096 3.904 5 H 0.076 0.924 6 C 0.026 3.974 7 N -0.535 5.535 8 C 0.060 3.940 9 C -0.097 4.097 10 C -0.082 4.082 11 S -0.214 6.214 12 C -0.502 4.502 13 H 0.088 0.912 14 C 0.091 3.909 15 N -0.882 5.882 16 Si 0.862 3.138 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.237 1.237 20 C 0.012 3.988 21 C 0.064 3.936 22 O -0.376 6.376 23 H 0.041 0.959 24 H 0.086 0.914 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.270 0.730 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.061 0.939 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.269 -14.345 -3.381 25.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.007 4.007 4 C 0.038 3.962 5 H 0.094 0.906 6 C -0.102 4.102 7 N -0.260 5.260 8 C -0.069 4.069 9 C -0.136 4.136 10 C -0.231 4.231 11 S 0.013 5.987 12 C -0.650 4.650 13 H 0.106 0.894 14 C -0.117 4.117 15 N -0.519 5.519 16 Si 0.687 3.313 17 H -0.194 1.194 18 H -0.201 1.201 19 H -0.161 1.161 20 C -0.116 4.116 21 C -0.013 4.013 22 O -0.294 6.294 23 H 0.060 0.940 24 H 0.105 0.895 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.346 -15.678 -3.111 25.873 hybrid contribution -0.231 1.808 -0.443 1.876 sum -20.577 -13.870 -3.554 25.068 Atomic orbital electron populations 1.22754 0.81007 1.02864 0.99922 1.87939 1.19584 1.27229 1.95384 1.22491 0.91810 0.85426 1.00984 1.22077 0.92191 0.93370 0.88579 0.90584 1.22655 0.88709 0.96582 1.02283 1.62176 1.06039 1.23809 1.33933 1.22198 0.95351 0.88377 1.00930 1.21335 0.92314 0.96812 1.03108 1.23012 0.97936 0.98705 1.03476 1.84159 1.02759 1.16129 1.95626 1.22123 0.96794 0.88958 1.57103 0.89444 1.24808 0.97840 0.95708 0.93388 1.69938 1.17500 1.17062 1.47383 0.86659 0.81740 0.83581 0.79301 1.19394 1.20107 1.16130 1.22899 1.02030 0.96203 0.90468 1.22682 0.80483 0.95592 1.02501 1.88022 1.21944 1.81498 1.37984 0.94049 0.89538 0.94089 0.91613 0.92475 0.93822 0.89389 0.94551 0.90446 0.90562 0.91549 0.91638 0.91343 0.91976 0.88740 0.93897 0.92111 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.99 10.67 -39.72 -0.42 -4.42 16 3 C 0.07 0.62 5.60 37.16 0.21 0.83 16 4 C 0.10 1.00 3.09 -26.68 -0.08 0.92 16 5 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 6 C 0.03 0.26 4.93 -3.71 -0.02 0.25 16 7 N -0.53 -6.29 4.73 -234.30 -1.11 -7.40 16 8 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 9 C -0.10 -1.47 5.15 -26.73 -0.14 -1.61 16 10 C -0.08 -1.57 5.67 37.16 0.21 -1.36 16 11 S -0.21 -5.22 19.41 -107.50 -2.09 -7.31 16 12 C -0.50 -14.59 10.04 30.94 0.31 -14.28 16 13 H 0.09 2.70 8.03 -52.48 -0.42 2.28 16 14 C 0.09 2.66 5.50 -17.43 -0.10 2.56 16 15 N -0.88 -26.80 13.97 55.49 0.78 -26.02 16 16 Si 0.86 21.58 27.74 -169.99 -4.71 16.86 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 20 C 0.01 0.13 5.44 -3.70 -0.02 0.11 16 21 C 0.06 0.67 7.01 37.21 0.26 0.93 16 22 O -0.38 -4.54 10.44 -39.72 -0.41 -4.96 16 23 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 31 H 0.08 0.93 8.04 -51.93 -0.42 0.52 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.00 6.52 -51.93 -0.34 0.66 16 34 H 0.06 1.26 8.14 -51.91 -0.42 0.83 16 35 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 36 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.09 1.04 6.38 -51.93 -0.33 0.71 16 38 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -32.35 335.63 -8.19 -40.53 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -7.00 Total: -2.76 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 1.73 Total: -9.59 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: -0.33 Total: -33.42 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.84 Total: -9.38 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.86 kcal Atomic # 16 Polarization: -5.22 SS G_CDS: -2.09 Total: -7.31 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.35 -8.19 -40.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074991460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.339 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds