Wall clock time and date at job start Mon Mar 30 2020 01:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00248 * 2 1 4 4 C 1.53004 * 109.47092 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.50775 * 305.08776 * 4 3 2 6 6 C 1.53096 * 109.50447 * 185.00276 * 4 3 2 7 7 N 1.47016 * 109.25942 * 183.21372 * 6 4 3 8 8 C 1.46896 * 111.00332 * 182.38961 * 7 6 4 9 9 C 1.53004 * 109.46909 * 170.00193 * 8 7 6 10 10 C 1.53003 * 109.46715 * 180.02562 * 9 8 7 11 11 S 1.81006 * 109.46986 * 180.02562 * 10 9 8 12 12 C 1.76195 * 100.00146 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99957 * 359.97438 * 12 11 10 14 14 C 1.38799 * 119.99958 * 180.02562 * 12 11 10 15 15 N 1.31633 * 119.99906 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00220 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.46950 * 90.00107 * 16 14 12 18 18 H 1.48497 * 109.47318 * 210.00312 * 16 14 12 19 19 H 1.48503 * 109.46830 * 330.00389 * 16 14 12 20 20 C 1.47024 * 110.74959 * 58.61828 * 7 6 4 21 21 C 1.53100 * 109.25427 * 301.38569 * 20 7 6 22 22 O 1.43014 * 109.26048 * 56.85033 * 21 20 7 23 23 H 1.09005 * 109.47101 * 59.99363 * 1 2 3 24 24 H 1.09002 * 109.47386 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46946 * 299.99351 * 1 2 3 26 26 H 1.09003 * 109.46633 * 60.00939 * 3 2 1 27 27 H 1.08998 * 109.47673 * 300.00137 * 3 2 1 28 28 H 1.08999 * 109.51205 * 303.15477 * 6 4 3 29 29 H 1.09004 * 109.50767 * 63.28232 * 6 4 3 30 30 H 1.08997 * 109.47795 * 290.00655 * 8 7 6 31 31 H 1.09004 * 109.46972 * 50.01032 * 8 7 6 32 32 H 1.09002 * 109.47439 * 300.00065 * 9 8 7 33 33 H 1.08993 * 109.47075 * 60.00813 * 9 8 7 34 34 H 1.09006 * 109.47334 * 299.99971 * 10 9 8 35 35 H 1.08996 * 109.47557 * 60.00323 * 10 9 8 36 36 H 0.96994 * 120.00160 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.50322 * 181.45133 * 20 7 6 38 38 H 1.09002 * 109.53969 * 61.33941 * 20 7 6 39 39 H 1.09000 * 109.50921 * 296.90945 * 21 20 7 40 40 H 1.09001 * 109.53866 * 176.80729 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8520 0.5668 0.8399 6 6 4.1587 2.5772 0.1252 7 7 5.6222 2.4625 0.0466 8 6 6.2631 3.7728 0.2201 9 6 7.7729 3.5846 0.3819 10 6 8.4404 4.9494 0.5633 11 16 10.2265 4.7269 0.7540 12 6 10.7259 6.4062 0.9405 13 1 9.9885 7.1949 0.9147 14 6 12.0671 6.7156 1.1196 15 7 12.4402 7.9703 1.2584 16 14 13.3426 5.3516 1.1635 17 1 13.8413 5.0959 -0.2116 18 1 14.4749 5.7606 2.0328 19 1 12.7252 4.1140 1.7043 20 6 6.0286 1.8412 -1.2225 21 6 5.3865 0.4559 -1.3348 22 8 3.9664 0.5838 -1.2249 23 1 -0.3633 0.5140 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.6887 1.8462 0.8901 27 1 1.6887 1.8464 -0.8899 28 1 3.7992 3.2115 -0.6851 29 1 3.8790 3.0160 1.0830 30 1 6.0659 4.3926 -0.6546 31 1 5.8605 4.2594 1.1085 32 1 7.9702 2.9649 1.2567 33 1 8.1756 3.0981 -0.5064 34 1 8.2431 5.5694 -0.3113 35 1 8.0376 5.4357 1.4517 36 1 13.3774 8.1865 1.3840 37 1 7.1137 1.7427 -1.2483 38 1 5.6996 2.4634 -2.0548 39 1 5.7575 -0.1833 -0.5335 40 1 5.6387 0.0143 -2.2989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074991460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:35 Heat of formation + Delta-G solvation = -120.920912 kcal Electronic energy + Delta-G solvation = -18974.536011 eV Core-core repulsion = 15914.429575 eV Total energy + Delta-G solvation = -3060.106436 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.82689 -38.68480 -37.34228 -34.69077 -34.12663 -33.12157 -29.63987 -28.25489 -27.86248 -26.48724 -25.10064 -23.88005 -22.03050 -21.39639 -19.62491 -17.78870 -17.52310 -17.45135 -17.09941 -16.66747 -16.37654 -16.18080 -15.99606 -15.69487 -15.30506 -15.09689 -14.90028 -14.61494 -13.79022 -13.50759 -13.42950 -13.30833 -13.03801 -12.95774 -12.75100 -12.49093 -12.38902 -12.09327 -11.99802 -11.75352 -11.68630 -11.39161 -11.16410 -10.68592 -10.63653 -10.53717 -9.44229 -8.99307 -8.52277 -6.23484 1.12481 1.31998 1.47986 1.73482 2.24672 2.50423 2.68941 2.71647 2.85712 3.01607 3.85720 3.89137 3.95344 4.01036 4.04520 4.16688 4.22386 4.29340 4.39491 4.42201 4.49980 4.52425 4.55012 4.57527 4.63424 4.67392 4.77487 4.82793 4.87133 4.92289 4.99369 5.13639 5.26406 5.69331 5.90472 5.91942 6.09705 6.13454 6.25796 6.91809 8.60751 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.052871 B = 0.002730 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.468208 B =10255.212024 C =10571.029303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.071 3.929 4 C 0.095 3.905 5 H 0.067 0.933 6 C 0.029 3.971 7 N -0.543 5.543 8 C 0.070 3.930 9 C -0.084 4.084 10 C -0.069 4.069 11 S -0.220 6.220 12 C -0.522 4.522 13 H 0.050 0.950 14 C 0.036 3.964 15 N -0.923 5.923 16 Si 0.927 3.073 17 H -0.261 1.261 18 H -0.263 1.263 19 H -0.229 1.229 20 C 0.013 3.987 21 C 0.065 3.935 22 O -0.394 6.394 23 H 0.048 0.952 24 H 0.094 0.906 25 H 0.055 0.945 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.038 0.962 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.277 0.723 37 H 0.094 0.906 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.106 -15.883 -3.408 27.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C -0.006 4.006 4 C 0.037 3.963 5 H 0.085 0.915 6 C -0.099 4.099 7 N -0.268 5.268 8 C -0.060 4.060 9 C -0.123 4.123 10 C -0.218 4.218 11 S 0.008 5.992 12 C -0.670 4.670 13 H 0.069 0.931 14 C -0.169 4.169 15 N -0.561 5.561 16 Si 0.748 3.252 17 H -0.186 1.186 18 H -0.188 1.188 19 H -0.152 1.152 20 C -0.115 4.115 21 C -0.012 4.012 22 O -0.313 6.313 23 H 0.066 0.934 24 H 0.113 0.887 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.122 0.878 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -21.202 -17.216 -3.137 27.491 hybrid contribution -0.116 2.314 -0.450 2.360 sum -21.318 -14.902 -3.587 26.256 Atomic orbital electron populations 1.22932 0.79322 1.03829 1.00953 1.87889 1.21549 1.28178 1.95619 1.22551 0.90697 0.85210 1.02171 1.22164 0.93348 0.93148 0.87689 0.91513 1.22683 0.87431 0.96549 1.03224 1.62140 1.07182 1.23098 1.34392 1.22027 0.93376 0.89070 1.01500 1.21208 0.93918 0.94047 1.03133 1.23068 0.94117 1.01244 1.03384 1.83858 1.07251 1.12430 1.95672 1.22344 0.96554 0.91013 1.57041 0.93135 1.25805 1.00031 0.98219 0.92825 1.70038 1.18440 1.19244 1.48334 0.85695 0.79087 0.80603 0.79852 1.18606 1.18797 1.15188 1.22909 1.02009 0.96503 0.90117 1.22759 0.79845 0.95214 1.03373 1.88005 1.22727 1.81785 1.38827 0.93383 0.88734 0.92642 0.89376 0.92231 0.93605 0.87819 0.94341 0.89581 0.90802 0.91212 0.91780 0.91396 0.91413 0.88827 0.94128 0.92291 0.86752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -8.07 10.67 -144.69 -1.54 -9.61 16 3 C 0.07 1.12 5.60 71.98 0.40 1.53 16 4 C 0.09 1.82 3.09 30.63 0.09 1.92 16 5 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 6 C 0.03 0.53 4.93 86.31 0.43 0.95 16 7 N -0.54 -11.68 4.73 -895.19 -4.23 -15.91 16 8 C 0.07 1.60 4.96 86.31 0.43 2.03 16 9 C -0.08 -2.40 5.15 30.60 0.16 -2.24 16 10 C -0.07 -2.58 5.67 71.98 0.41 -2.17 16 11 S -0.22 -10.54 19.41 -56.49 -1.10 -11.64 16 12 C -0.52 -30.81 10.04 67.95 0.68 -30.13 16 13 H 0.05 3.24 8.03 -2.91 -0.02 3.22 16 14 C 0.04 2.11 5.50 84.86 0.47 2.58 16 15 N -0.92 -56.92 13.97 21.65 0.30 -56.62 16 16 Si 0.93 44.18 27.74 68.60 1.90 46.08 16 17 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 19 H -0.23 -10.49 6.74 99.48 0.67 -9.82 16 20 C 0.01 0.26 5.44 86.31 0.47 0.73 16 21 C 0.06 1.25 7.01 72.02 0.50 1.75 16 22 O -0.39 -9.04 10.44 -144.69 -1.51 -10.55 16 23 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 24 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.10 1.52 8.09 -2.38 -0.02 1.51 16 30 H 0.04 0.89 8.12 -2.39 -0.02 0.87 16 31 H 0.09 1.86 8.04 -2.39 -0.02 1.84 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.07 1.96 6.52 -2.39 -0.02 1.95 16 34 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.07 2.54 8.14 -2.40 -0.02 2.52 16 36 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 37 H 0.09 1.91 6.38 -2.39 -0.02 1.89 16 38 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -69.37 335.63 0.06 -69.31 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.95 Total: 10.44 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 5.29 Total: -21.50 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -3.93 Total: -72.53 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -3.05 Total: -20.17 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.90 Total: 46.08 kcal Atomic # 16 Polarization: -10.54 SS G_CDS: -1.10 Total: -11.64 kcal Total: -69.37 0.06 -69.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074991460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.606 kcal (2) G-P(sol) polarization free energy of solvation -69.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds