Wall clock time and date at job start Mon Mar 30 2020 01:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86803 * 120.00028 * 2 1 4 4 H 1.48500 * 109.47303 * 240.00359 * 3 2 1 5 5 H 1.48499 * 109.46956 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47359 * 120.00078 * 3 2 1 7 7 C 1.38654 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99931 * 180.02562 * 7 2 1 9 9 O 1.34826 * 119.99970 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99724 * 185.05457 * 9 7 2 11 11 C 1.38871 * 120.07093 * 354.47270 * 10 9 7 12 12 C 1.38101 * 119.93230 * 180.02562 * 11 10 9 13 13 C 1.38308 * 120.06351 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.92770 * 179.97438 * 13 12 11 15 15 N 1.46503 * 109.47448 * 89.99847 * 14 13 12 16 16 C 1.37479 * 120.00155 * 180.02562 * 15 14 13 17 17 N 1.37490 * 120.00291 * 359.97438 * 16 15 14 18 18 N 1.30343 * 119.99925 * 180.02562 * 16 15 14 19 19 C 1.46505 * 119.99963 * 179.97438 * 18 16 15 20 20 C 1.53001 * 117.49801 * 188.74665 * 19 18 16 21 21 C 1.52998 * 117.50039 * 120.08402 * 19 18 16 22 22 C 1.38299 * 120.13958 * 0.24969 * 13 12 11 23 23 C 1.38093 * 120.06953 * 359.45600 * 22 13 12 24 24 H 0.97002 * 120.00021 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.03853 * 359.97438 * 11 10 9 26 26 H 1.07997 * 119.96732 * 179.97438 * 12 11 10 27 27 H 1.09002 * 109.47376 * 209.99867 * 14 13 12 28 28 H 1.09001 * 109.47298 * 329.99829 * 14 13 12 29 29 H 0.97000 * 119.99373 * 359.97438 * 15 14 13 30 30 H 0.97002 * 119.99418 * 0.02562 * 17 16 15 31 31 H 0.96989 * 119.99992 * 180.02562 * 17 16 15 32 32 H 1.09000 * 115.55049 * 334.41711 * 19 18 16 33 33 H 1.08999 * 117.49586 * 359.97438 * 20 19 18 34 34 H 1.08994 * 117.49551 * 145.02162 * 20 19 18 35 35 H 1.08991 * 117.50298 * 214.98040 * 21 19 18 36 36 H 1.09004 * 117.49713 * 0.02562 * 21 19 18 37 37 H 1.08005 * 119.96050 * 179.70549 * 22 13 12 38 38 H 1.07999 * 120.03730 * 180.26989 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1034 1.6965 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1055 11 6 3.4572 -3.4394 0.0921 12 6 4.2025 -4.5971 0.1997 13 6 3.5687 -5.8205 0.3200 14 6 4.3850 -7.0819 0.4366 15 7 4.6566 -7.3591 1.8493 16 6 5.3905 -8.4662 2.2038 17 7 5.8691 -9.3137 1.2326 18 7 5.6317 -8.7131 3.4607 19 6 6.4133 -9.8932 3.8385 20 6 6.4902 -10.2430 5.3260 21 6 7.7131 -9.6619 4.6118 22 6 2.1874 -5.8892 0.3279 23 6 1.4367 -4.7346 0.2269 24 1 -0.4850 0.8401 0.0004 25 1 3.9527 -2.4845 -0.0031 26 1 5.2813 -4.5471 0.1889 27 1 3.8311 -7.9145 0.0029 28 1 5.3273 -6.9555 -0.0966 29 1 4.3193 -6.7610 2.5344 30 1 5.6892 -9.1301 0.2973 31 1 6.3865 -10.0950 1.4828 32 1 6.3908 -10.7193 3.1278 33 1 5.9597 -9.5948 6.0235 34 1 6.5187 -11.2992 5.5938 35 1 8.5455 -10.3359 4.4101 36 1 7.9865 -8.6316 4.8397 37 1 1.6955 -6.8465 0.4173 38 1 0.3581 -4.7884 0.2375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076105929.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:02 Heat of formation + Delta-G solvation = 54.281136 kcal Electronic energy + Delta-G solvation = -19686.913987 eV Core-core repulsion = 16531.253682 eV Total energy + Delta-G solvation = -3155.660305 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.33829 -38.64400 -37.09440 -36.19909 -33.45899 -32.31931 -31.01012 -30.29655 -29.39730 -25.87645 -24.70736 -22.34101 -22.12021 -22.06891 -20.71416 -19.75974 -18.11278 -17.93240 -17.09117 -16.95825 -15.38116 -15.11854 -15.02038 -14.60564 -14.22752 -14.11340 -13.93582 -13.68261 -13.39731 -12.81366 -12.78566 -12.70066 -12.11531 -11.71051 -11.51122 -11.37010 -10.96025 -10.86652 -10.75774 -10.72167 -10.52790 -10.50789 -9.44636 -9.17269 -9.05195 -8.92346 -8.30522 -7.59851 -7.35992 -6.53918 -4.12922 2.02743 2.11635 2.84281 3.07822 3.09148 3.12744 3.22874 3.89362 3.91414 4.11793 4.48569 4.78587 4.91030 4.99778 5.08606 5.13812 5.17338 5.27810 5.51825 5.60733 5.61759 5.63168 5.74496 5.89976 5.98378 6.10319 6.18869 6.31276 6.54164 6.60811 6.78345 6.85048 6.94004 7.11594 7.23892 7.33545 7.50046 7.69185 7.90532 7.99074 8.67900 8.91214 9.58872 10.63428 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.030692 B = 0.002861 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.082828 B = 9782.772684 C =10157.539217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.172 6.172 10 C 0.161 3.839 11 C -0.237 4.237 12 C -0.048 4.048 13 C -0.215 4.215 14 C 0.183 3.817 15 N -0.716 5.716 16 C 0.632 3.368 17 N -0.895 5.895 18 N -0.650 5.650 19 C 0.041 3.959 20 C -0.165 4.165 21 C -0.189 4.189 22 C -0.052 4.052 23 C -0.196 4.196 24 H 0.272 0.728 25 H 0.128 0.872 26 H 0.108 0.892 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.418 0.582 30 H 0.391 0.609 31 H 0.405 0.595 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.239 -15.779 1.329 19.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.074 6.074 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.067 4.067 13 C -0.216 4.216 14 C 0.060 3.940 15 N -0.360 5.360 16 C 0.268 3.732 17 N -0.452 5.452 18 N -0.395 5.395 19 C -0.072 4.072 20 C -0.203 4.203 21 C -0.227 4.227 22 C -0.071 4.071 23 C -0.215 4.215 24 H 0.082 0.918 25 H 0.146 0.854 26 H 0.126 0.874 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.257 0.743 30 H 0.220 0.780 31 H 0.236 0.764 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.130 0.870 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.596 -15.190 1.969 18.625 hybrid contribution 0.801 0.297 -0.690 1.098 sum 11.396 -14.893 1.278 18.797 Atomic orbital electron populations 1.70026 1.06021 1.28027 1.45225 1.25323 0.95863 0.98952 0.96288 0.85761 0.78733 0.79576 0.79281 1.19429 1.20194 1.19375 1.21315 0.91858 0.80721 1.53129 0.88940 1.83978 1.34519 1.11570 1.77374 1.19445 0.90332 0.88057 0.91517 1.21151 0.93772 0.98969 1.11782 1.20622 0.98340 0.91626 0.96089 1.19038 0.93462 0.93356 1.15754 1.19972 0.97746 0.95275 0.81041 1.44381 1.57930 1.25316 1.08362 1.19057 0.85680 0.83565 0.84889 1.43167 1.63052 1.30345 1.08614 1.72466 1.32945 1.23399 1.10714 1.21576 0.97432 0.94084 0.94144 1.22901 1.01551 1.00556 0.95271 1.23145 0.91518 1.02049 1.06014 1.20508 0.92730 0.96850 0.96972 1.20213 0.99708 0.90244 1.11329 0.91790 0.85415 0.87413 0.92335 0.92365 0.74337 0.78033 0.76350 0.90893 0.88532 0.89309 0.89558 0.88833 0.86975 0.86359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.63 13.67 55.48 0.76 -23.87 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 19.99 29.55 -169.99 -5.02 14.97 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.39 -10.69 9.49 30.89 0.29 -10.40 16 8 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 9 O -0.17 -4.75 9.76 0.05 0.00 -4.75 16 10 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 11 C -0.24 -4.85 9.17 -39.40 -0.36 -5.21 16 12 C -0.05 -0.80 9.69 -39.61 -0.38 -1.19 16 13 C -0.21 -3.24 5.25 -104.57 -0.55 -3.79 16 14 C 0.18 2.11 5.17 -5.19 -0.03 2.08 16 15 N -0.72 -8.93 5.66 -62.97 -0.36 -9.28 16 16 C 0.63 7.85 8.63 -320.08 -2.76 5.09 16 17 N -0.89 -7.91 8.78 30.14 0.26 -7.65 16 18 N -0.65 -9.20 10.87 -55.27 -0.60 -9.80 16 19 C 0.04 0.48 6.02 -67.93 -0.41 0.07 16 20 C -0.16 -1.78 10.46 -26.69 -0.28 -2.06 16 21 C -0.19 -2.01 10.46 -26.69 -0.28 -2.28 16 22 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 23 C -0.20 -3.89 9.99 -39.40 -0.39 -4.28 16 24 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 25 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 26 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 27 H 0.06 0.60 7.94 -51.93 -0.41 0.18 16 28 H 0.06 0.60 7.94 -51.93 -0.41 0.19 16 29 H 0.42 5.77 8.58 -40.82 -0.35 5.42 16 30 H 0.39 2.81 7.36 -40.82 -0.30 2.51 16 31 H 0.40 3.06 6.53 -40.82 -0.27 2.80 16 32 H 0.07 0.72 6.47 -51.93 -0.34 0.39 16 33 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 38 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 326.50 15.07 4.92 4.92 Total: -1.00 -30.26 326.50 -10.67 -40.93 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -4.74 Total: 13.27 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -5.89 Total: -18.74 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.07 Total: -50.60 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: 0.00 Total: -4.75 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.26 -10.67 -40.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076105929.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.208 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds