Wall clock time and date at job start Mon Mar 30 2020 01:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86803 * 120.00028 * 2 1 4 4 H 1.48500 * 109.47303 * 240.00359 * 3 2 1 5 5 H 1.48499 * 109.46956 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47359 * 120.00078 * 3 2 1 7 7 C 1.38654 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99931 * 180.02562 * 7 2 1 9 9 O 1.34826 * 119.99970 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99724 * 185.05457 * 9 7 2 11 11 C 1.38871 * 120.07093 * 354.47270 * 10 9 7 12 12 C 1.38101 * 119.93230 * 180.02562 * 11 10 9 13 13 C 1.38308 * 120.06351 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.92770 * 179.97438 * 13 12 11 15 15 N 1.46503 * 109.47448 * 89.99847 * 14 13 12 16 16 C 1.37479 * 120.00155 * 180.02562 * 15 14 13 17 17 N 1.37490 * 120.00291 * 359.97438 * 16 15 14 18 18 N 1.30343 * 119.99925 * 180.02562 * 16 15 14 19 19 C 1.46505 * 119.99963 * 179.97438 * 18 16 15 20 20 C 1.53001 * 117.49801 * 188.74665 * 19 18 16 21 21 C 1.52998 * 117.50039 * 120.08402 * 19 18 16 22 22 C 1.38299 * 120.13958 * 0.24969 * 13 12 11 23 23 C 1.38093 * 120.06953 * 359.45600 * 22 13 12 24 24 H 0.97002 * 120.00021 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.03853 * 359.97438 * 11 10 9 26 26 H 1.07997 * 119.96732 * 179.97438 * 12 11 10 27 27 H 1.09002 * 109.47376 * 209.99867 * 14 13 12 28 28 H 1.09001 * 109.47298 * 329.99829 * 14 13 12 29 29 H 0.97000 * 119.99373 * 359.97438 * 15 14 13 30 30 H 0.97002 * 119.99418 * 0.02562 * 17 16 15 31 31 H 0.96989 * 119.99992 * 180.02562 * 17 16 15 32 32 H 1.09000 * 115.55049 * 334.41711 * 19 18 16 33 33 H 1.08999 * 117.49586 * 359.97438 * 20 19 18 34 34 H 1.08994 * 117.49551 * 145.02162 * 20 19 18 35 35 H 1.08991 * 117.50298 * 214.98040 * 21 19 18 36 36 H 1.09004 * 117.49713 * 0.02562 * 21 19 18 37 37 H 1.08005 * 119.96050 * 179.70549 * 22 13 12 38 38 H 1.07999 * 120.03730 * 180.26989 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1034 1.6965 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1055 11 6 3.4572 -3.4394 0.0921 12 6 4.2025 -4.5971 0.1997 13 6 3.5687 -5.8205 0.3200 14 6 4.3850 -7.0819 0.4366 15 7 4.6566 -7.3591 1.8493 16 6 5.3905 -8.4662 2.2038 17 7 5.8691 -9.3137 1.2326 18 7 5.6317 -8.7131 3.4607 19 6 6.4133 -9.8932 3.8385 20 6 6.4902 -10.2430 5.3260 21 6 7.7131 -9.6619 4.6118 22 6 2.1874 -5.8892 0.3279 23 6 1.4367 -4.7346 0.2269 24 1 -0.4850 0.8401 0.0004 25 1 3.9527 -2.4845 -0.0031 26 1 5.2813 -4.5471 0.1889 27 1 3.8311 -7.9145 0.0029 28 1 5.3273 -6.9555 -0.0966 29 1 4.3193 -6.7610 2.5344 30 1 5.6892 -9.1301 0.2973 31 1 6.3865 -10.0950 1.4828 32 1 6.3908 -10.7193 3.1278 33 1 5.9597 -9.5948 6.0235 34 1 6.5187 -11.2992 5.5938 35 1 8.5455 -10.3359 4.4101 36 1 7.9865 -8.6316 4.8397 37 1 1.6955 -6.8465 0.4173 38 1 0.3581 -4.7884 0.2375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076105929.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:01 Heat of formation + Delta-G solvation = 34.969161 kcal Electronic energy + Delta-G solvation = -19687.751417 eV Core-core repulsion = 16531.253682 eV Total energy + Delta-G solvation = -3156.497735 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.86514 -39.68743 -38.47758 -37.24957 -34.65388 -34.06047 -31.91562 -31.79891 -30.72893 -27.61474 -26.08636 -23.63684 -23.16426 -23.03941 -22.10282 -20.66766 -19.86409 -18.97119 -18.63472 -17.87567 -16.57177 -16.51082 -16.19895 -15.94000 -15.52997 -15.43061 -15.37137 -14.93056 -14.71668 -14.37304 -14.08372 -13.65479 -13.60581 -13.12799 -12.96859 -12.48086 -12.37890 -12.31806 -12.21296 -12.14438 -11.59524 -11.36538 -11.19216 -10.80585 -10.02535 -9.90404 -9.78822 -9.00947 -8.52060 -8.48437 -6.16814 0.56403 0.59847 1.35237 1.45176 1.51211 1.95379 2.16964 2.22969 2.84055 3.10275 3.24638 3.28945 3.50327 3.88261 3.97258 4.05250 4.09747 4.19021 4.32722 4.49086 4.57699 4.61416 4.79986 4.81984 4.82783 5.05085 5.08009 5.13028 5.14596 5.28263 5.36487 5.53784 5.70521 5.76161 5.76749 6.01613 6.13345 6.19560 6.54839 6.96314 7.18218 7.76116 7.80184 8.74302 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.030692 B = 0.002861 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.082828 B = 9782.772684 C =10157.539217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.415 4.415 8 H 0.103 0.897 9 O -0.230 6.230 10 C 0.120 3.880 11 C -0.247 4.247 12 C -0.045 4.045 13 C -0.180 4.180 14 C 0.188 3.812 15 N -0.721 5.721 16 C 0.630 3.370 17 N -0.879 5.879 18 N -0.690 5.690 19 C 0.028 3.972 20 C -0.168 4.168 21 C -0.183 4.183 22 C -0.043 4.043 23 C -0.209 4.209 24 H 0.273 0.727 25 H 0.118 0.882 26 H 0.140 0.860 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.411 0.589 30 H 0.403 0.597 31 H 0.412 0.588 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.075 0.925 37 H 0.149 0.851 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.111 -18.577 1.002 23.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.491 4.491 8 H 0.120 0.880 9 O -0.137 6.137 10 C 0.069 3.931 11 C -0.266 4.266 12 C -0.064 4.064 13 C -0.182 4.182 14 C 0.065 3.935 15 N -0.363 5.363 16 C 0.265 3.735 17 N -0.438 5.438 18 N -0.437 5.437 19 C -0.085 4.085 20 C -0.206 4.206 21 C -0.222 4.222 22 C -0.061 4.061 23 C -0.228 4.228 24 H 0.082 0.918 25 H 0.136 0.864 26 H 0.158 0.842 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.247 0.753 30 H 0.233 0.767 31 H 0.245 0.755 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.094 0.906 37 H 0.167 0.833 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.519 -18.069 1.620 22.624 hybrid contribution 0.063 0.736 -0.543 0.917 sum 13.581 -17.333 1.077 22.046 Atomic orbital electron populations 1.70174 1.08035 1.28927 1.48612 1.26587 0.96829 1.02772 0.95791 0.84662 0.77414 0.74312 0.79949 1.18026 1.19702 1.18259 1.21792 0.92554 0.81398 1.53312 0.87966 1.83945 1.36085 1.12682 1.80945 1.20022 0.91712 0.87964 0.93354 1.21256 0.93006 1.00209 1.12163 1.20977 0.99831 0.90818 0.94726 1.19497 0.93368 0.94507 1.10786 1.20060 0.98580 0.93831 0.81073 1.44262 1.58299 1.25517 1.08253 1.18984 0.85521 0.83670 0.85290 1.43020 1.62362 1.29829 1.08583 1.72368 1.34178 1.24960 1.12182 1.21764 0.97710 0.94130 0.94847 1.22959 1.01510 1.01474 0.94681 1.23150 0.91981 1.01569 1.05479 1.20915 0.93307 0.96899 0.94997 1.20472 1.00059 0.90585 1.11669 0.91796 0.86411 0.84189 0.89715 0.89992 0.75254 0.76732 0.75466 0.88860 0.90369 0.87144 0.87222 0.90642 0.83348 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.03 13.67 21.61 0.30 -55.74 16 2 C -0.02 -1.24 5.49 84.83 0.47 -0.77 16 3 Si 1.02 42.33 29.55 68.60 2.03 44.36 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 7 C -0.41 -23.76 9.49 67.92 0.64 -23.12 16 8 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 9 O -0.23 -13.61 9.76 -22.74 -0.22 -13.83 16 10 C 0.12 5.76 6.65 22.58 0.15 5.91 16 11 C -0.25 -10.15 9.17 22.39 0.21 -9.94 16 12 C -0.05 -1.39 9.69 22.25 0.22 -1.17 16 13 C -0.18 -4.75 5.25 -19.83 -0.10 -4.86 16 14 C 0.19 3.33 5.17 85.63 0.44 3.78 16 15 N -0.72 -15.17 5.66 -353.13 -2.00 -17.16 16 16 C 0.63 13.43 8.63 260.53 2.25 15.68 16 17 N -0.88 -11.74 8.78 -58.56 -0.51 -12.25 16 18 N -0.69 -17.96 10.87 -328.76 -3.57 -21.54 16 19 C 0.03 0.60 6.02 44.99 0.27 0.87 16 20 C -0.17 -3.32 10.46 30.62 0.32 -3.00 16 21 C -0.18 -3.49 10.46 30.62 0.32 -3.17 16 22 C -0.04 -1.27 9.69 22.25 0.22 -1.06 16 23 C -0.21 -8.37 9.99 22.39 0.22 -8.15 16 24 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 25 H 0.12 4.99 5.64 -2.91 -0.02 4.97 16 26 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 27 H 0.08 1.18 7.94 -2.39 -0.02 1.16 16 28 H 0.08 1.18 7.94 -2.39 -0.02 1.16 16 29 H 0.41 10.12 8.58 -92.71 -0.80 9.33 16 30 H 0.40 3.69 7.36 -92.71 -0.68 3.01 16 31 H 0.41 4.52 6.53 -92.72 -0.61 3.91 16 32 H 0.09 1.51 6.47 -2.39 -0.02 1.50 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 34 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 38 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -71.91 326.50 0.67 -71.25 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: -0.97 Total: 33.93 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 5.62 Total: -29.01 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -5.79 Total: -106.69 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.22 Total: -13.83 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -71.91 0.67 -71.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076105929.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.215 kcal (2) G-P(sol) polarization free energy of solvation -71.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds