Wall clock time and date at job start Mon Mar 30 2020 01:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42101 * 108.57875 * 2 1 4 4 O 1.42101 * 108.57832 * 228.97674 * 2 1 3 5 5 C 1.81396 * 101.92358 * 114.48905 * 2 1 3 6 6 C 1.52996 * 109.47548 * 180.02562 * 5 2 1 7 7 C 1.52997 * 109.47491 * 180.02562 * 6 5 2 8 8 N 1.46507 * 109.47135 * 179.97438 * 7 6 5 9 9 C 1.36934 * 119.99983 * 269.99659 * 8 7 6 10 10 H 1.08001 * 120.00038 * 141.59641 * 9 8 7 11 11 C 1.38812 * 119.99992 * 321.59797 * 9 8 7 12 12 N 1.31618 * 120.00136 * 339.27501 * 11 9 8 13 13 Si 1.86808 * 120.00036 * 159.27109 * 11 9 8 14 14 H 1.48500 * 109.46856 * 60.00037 * 13 11 9 15 15 H 1.48493 * 109.47079 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47260 * 300.00328 * 13 11 9 17 17 C 1.46493 * 119.99819 * 90.00169 * 8 7 6 18 18 C 1.54272 * 110.03022 * 242.54650 * 17 8 7 19 19 C 1.54963 * 104.16292 * 217.13754 * 18 17 8 20 20 C 1.54891 * 102.77391 * 37.88635 * 19 18 17 21 21 C 1.53870 * 110.03465 * 125.33183 * 17 8 7 22 22 H 1.09000 * 109.46792 * 305.51350 * 1 2 3 23 23 H 1.08997 * 109.46847 * 65.51128 * 1 2 3 24 24 H 1.08997 * 109.46896 * 185.51573 * 1 2 3 25 25 H 1.09005 * 109.47508 * 59.99873 * 5 2 1 26 26 H 1.09004 * 109.46918 * 299.99667 * 5 2 1 27 27 H 1.08996 * 109.47093 * 59.99146 * 6 5 2 28 28 H 1.09011 * 109.46953 * 299.99726 * 6 5 2 29 29 H 1.09002 * 109.47110 * 59.99652 * 7 6 5 30 30 H 1.08998 * 109.47048 * 299.99738 * 7 6 5 31 31 H 0.97006 * 119.99846 * 175.02447 * 12 11 9 32 32 H 1.08997 * 110.02122 * 3.93577 * 17 8 7 33 33 H 1.09005 * 110.48444 * 335.78674 * 18 17 8 34 34 H 1.09000 * 110.48875 * 98.42735 * 18 17 8 35 35 H 1.09002 * 110.72173 * 279.57436 * 19 18 17 36 36 H 1.08995 * 110.92652 * 156.29458 * 19 18 17 37 37 H 1.09003 * 110.48554 * 203.40557 * 20 19 18 38 38 H 1.09002 * 110.59872 * 80.82256 * 20 19 18 39 39 H 1.08998 * 110.03552 * 238.56616 * 21 17 8 40 40 H 1.08996 * 110.03248 * 359.97438 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 3.7055 -0.8185 1.7984 7 6 4.0216 -1.4396 3.1604 8 7 5.4740 -1.5193 3.3356 9 6 6.1528 -2.6356 2.9254 10 1 7.1260 -2.5380 2.4676 11 6 5.5899 -3.8927 3.0982 12 7 4.6369 -4.0704 3.9884 13 14 6.1851 -5.3323 2.0670 14 1 7.6334 -5.5509 2.3116 15 1 5.4294 -6.5547 2.4407 16 1 5.9653 -5.0353 0.6287 17 6 6.2000 -0.4049 3.9496 18 6 7.2045 0.1907 2.9415 19 6 8.4351 0.5622 3.8070 20 6 8.5015 -0.6027 4.8258 21 6 7.0241 -0.9087 5.1473 22 1 -0.3633 0.5970 0.8365 23 1 -0.3633 0.4260 -0.9352 24 1 -0.3633 -1.0229 0.0988 25 1 1.7611 -1.7370 1.6665 26 1 1.7612 -0.1171 2.4042 27 1 4.1328 0.1829 1.7473 28 1 4.1336 -1.4369 1.0094 29 1 3.5943 -2.4411 3.2110 30 1 3.5935 -0.8216 3.9497 31 1 4.1937 -4.9304 4.0593 32 1 5.4985 0.3630 4.2756 33 1 7.4764 -0.5511 2.1905 34 1 6.7880 1.0796 2.4678 35 1 8.2755 1.5124 4.3166 36 1 9.3406 0.5977 3.2014 37 1 9.0315 -0.2921 5.7263 38 1 8.9836 -1.4735 4.3817 39 1 6.7231 -0.3848 6.0545 40 1 6.8835 -1.9824 5.2721 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078003527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:23 Heat of formation + Delta-G solvation = -67.041843 kcal Electronic energy + Delta-G solvation = -20331.796345 eV Core-core repulsion = 17274.026281 eV Total energy + Delta-G solvation = -3057.770064 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -37.79017 -36.75617 -35.82006 -35.03781 -32.70570 -30.78799 -29.61425 -27.80383 -26.91694 -25.87295 -22.98391 -20.68695 -19.89290 -19.02692 -18.66772 -16.73075 -16.05868 -15.98142 -15.71765 -15.28510 -14.81693 -14.31219 -14.07683 -13.38944 -13.31170 -13.22323 -12.96439 -12.56131 -12.40593 -11.88146 -11.79069 -11.66057 -11.53821 -11.05695 -11.03277 -10.88758 -10.77103 -10.60552 -10.38526 -10.27542 -10.25721 -10.15299 -9.97214 -9.62810 -9.61740 -9.44323 -8.45548 -6.58725 -5.77433 -3.39873 0.14755 2.93931 3.37996 3.43426 3.48151 3.80819 4.13915 4.47928 4.74950 4.83649 4.99585 5.21848 5.28492 5.42488 5.47365 5.54200 5.55756 5.77080 5.87942 6.15672 6.19158 6.27605 6.31550 6.38563 6.48082 6.58918 6.61350 6.63699 6.69792 6.88481 7.01542 7.07307 7.20420 7.40918 7.61601 7.83501 8.51968 9.18600 9.80523 10.38720 11.18228 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.006316 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.098778 B = 4431.787967 C = 5610.240268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.663 4.663 2 S 2.407 3.593 3 O -0.949 6.949 4 O -0.944 6.944 5 C -0.588 4.588 6 C -0.129 4.129 7 C 0.155 3.845 8 N -0.576 5.576 9 C -0.247 4.247 10 H 0.062 0.938 11 C 0.013 3.987 12 N -0.886 5.886 13 Si 0.889 3.111 14 H -0.281 1.281 15 H -0.291 1.291 16 H -0.281 1.281 17 C 0.168 3.832 18 C -0.138 4.138 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.130 4.130 22 H 0.124 0.876 23 H 0.122 0.878 24 H 0.125 0.875 25 H 0.130 0.870 26 H 0.125 0.875 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.026 0.974 31 H 0.253 0.747 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.061 0.939 39 H 0.040 0.960 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.888 7.597 -1.912 9.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.811 4.811 2 S 2.590 3.410 3 O -0.946 6.946 4 O -0.941 6.941 5 C -0.719 4.719 6 C -0.171 4.171 7 C 0.027 3.973 8 N -0.294 5.294 9 C -0.377 4.377 10 H 0.079 0.921 11 C -0.188 4.188 12 N -0.528 5.528 13 Si 0.718 3.282 14 H -0.207 1.207 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.061 3.939 18 C -0.177 4.177 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.169 4.169 22 H 0.143 0.857 23 H 0.141 0.859 24 H 0.144 0.856 25 H 0.148 0.852 26 H 0.143 0.857 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.414 7.733 -2.484 9.761 hybrid contribution -0.513 -1.056 0.033 1.175 sum -5.927 6.677 -2.451 9.259 Atomic orbital electron populations 1.30336 1.28520 1.11174 1.11039 1.08442 0.77750 0.75915 0.78868 1.93559 1.78792 1.35106 1.87116 1.93582 1.78622 1.66789 1.55110 1.30221 1.08418 1.13066 1.20241 1.22141 0.87431 1.02349 1.05172 1.20903 0.85362 1.01438 0.89622 1.43950 1.02429 1.15106 1.67949 1.18909 1.03153 0.83526 1.32143 0.92054 1.25149 0.99585 0.97292 0.96731 1.70059 1.27388 1.23903 1.31467 0.86585 0.78536 0.82084 0.80966 1.20686 1.21681 1.20674 1.21092 0.92336 0.89697 0.90765 1.22887 0.95900 0.99742 0.99206 1.22436 0.98102 0.97774 0.97742 1.22257 0.97765 0.97893 0.97631 1.22528 0.93704 1.03309 0.97395 0.85690 0.85948 0.85581 0.85201 0.85697 0.92026 0.90471 0.88610 0.95520 0.93661 0.93396 0.90765 0.93358 0.92702 0.92922 0.93473 0.92002 0.94153 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -5.39 10.62 101.05 1.07 -4.32 16 2 S 2.41 31.08 5.36 -107.50 -0.58 30.50 16 3 O -0.95 -15.44 18.10 -57.83 -1.05 -16.49 16 4 O -0.94 -16.22 18.10 -57.83 -1.05 -17.27 16 5 C -0.59 -7.84 5.81 37.16 0.22 -7.62 16 6 C -0.13 -2.40 5.55 -26.73 -0.15 -2.55 16 7 C 0.15 3.35 5.28 -4.04 -0.02 3.33 16 8 N -0.58 -13.42 2.38 -164.39 -0.39 -13.81 16 9 C -0.25 -6.36 7.75 -15.06 -0.12 -6.47 16 10 H 0.06 1.61 6.94 -52.49 -0.36 1.24 16 11 C 0.01 0.33 4.96 -17.43 -0.09 0.25 16 12 N -0.89 -24.11 11.48 55.49 0.64 -23.47 16 13 Si 0.89 21.09 29.61 -169.99 -5.03 16.06 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 C 0.17 3.45 3.42 -66.81 -0.23 3.22 16 18 C -0.14 -2.57 6.43 -25.03 -0.16 -2.73 16 19 C -0.12 -1.98 6.91 -24.70 -0.17 -2.15 16 20 C -0.12 -2.03 6.83 -25.07 -0.17 -2.20 16 21 C -0.13 -2.58 6.24 -25.62 -0.16 -2.74 16 22 H 0.12 0.77 8.14 -51.92 -0.42 0.34 16 23 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.13 1.55 8.14 -51.92 -0.42 1.13 16 26 H 0.12 1.31 8.14 -51.92 -0.42 0.89 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.08 1.58 8.14 -51.92 -0.42 1.16 16 29 H 0.10 2.32 5.55 -51.93 -0.29 2.03 16 30 H 0.03 0.54 7.91 -51.93 -0.41 0.13 16 31 H 0.25 6.73 8.32 -40.82 -0.34 6.39 16 32 H 0.05 0.94 7.81 -51.93 -0.41 0.53 16 33 H 0.07 1.53 6.64 -51.93 -0.34 1.18 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 2.03 7.17 -51.93 -0.37 1.66 16 LS Contribution 332.32 15.07 5.01 5.01 Total: -1.00 -32.59 332.32 -9.24 -41.82 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.82 Total: 1.64 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 0.02 Total: -24.00 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.25 Total: -37.28 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -2.09 Total: -33.76 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Atomic # 16 Polarization: 31.08 SS G_CDS: -0.58 Total: 30.50 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.59 -9.24 -41.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.217 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds