Wall clock time and date at job start Mon Mar 30 2020 01:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42101 * 108.57875 * 2 1 4 4 O 1.42101 * 108.57832 * 228.97674 * 2 1 3 5 5 C 1.81396 * 101.92358 * 114.48905 * 2 1 3 6 6 C 1.52996 * 109.47548 * 180.02562 * 5 2 1 7 7 C 1.52997 * 109.47491 * 180.02562 * 6 5 2 8 8 N 1.46507 * 109.47135 * 179.97438 * 7 6 5 9 9 C 1.36934 * 119.99983 * 269.99659 * 8 7 6 10 10 H 1.08001 * 120.00038 * 141.59641 * 9 8 7 11 11 C 1.38812 * 119.99992 * 321.59797 * 9 8 7 12 12 N 1.31618 * 120.00136 * 339.27501 * 11 9 8 13 13 Si 1.86808 * 120.00036 * 159.27109 * 11 9 8 14 14 H 1.48500 * 109.46856 * 60.00037 * 13 11 9 15 15 H 1.48493 * 109.47079 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47260 * 300.00328 * 13 11 9 17 17 C 1.46493 * 119.99819 * 90.00169 * 8 7 6 18 18 C 1.54272 * 110.03022 * 242.54650 * 17 8 7 19 19 C 1.54963 * 104.16292 * 217.13754 * 18 17 8 20 20 C 1.54891 * 102.77391 * 37.88635 * 19 18 17 21 21 C 1.53870 * 110.03465 * 125.33183 * 17 8 7 22 22 H 1.09000 * 109.46792 * 305.51350 * 1 2 3 23 23 H 1.08997 * 109.46847 * 65.51128 * 1 2 3 24 24 H 1.08997 * 109.46896 * 185.51573 * 1 2 3 25 25 H 1.09005 * 109.47508 * 59.99873 * 5 2 1 26 26 H 1.09004 * 109.46918 * 299.99667 * 5 2 1 27 27 H 1.08996 * 109.47093 * 59.99146 * 6 5 2 28 28 H 1.09011 * 109.46953 * 299.99726 * 6 5 2 29 29 H 1.09002 * 109.47110 * 59.99652 * 7 6 5 30 30 H 1.08998 * 109.47048 * 299.99738 * 7 6 5 31 31 H 0.97006 * 119.99846 * 175.02447 * 12 11 9 32 32 H 1.08997 * 110.02122 * 3.93577 * 17 8 7 33 33 H 1.09005 * 110.48444 * 335.78674 * 18 17 8 34 34 H 1.09000 * 110.48875 * 98.42735 * 18 17 8 35 35 H 1.09002 * 110.72173 * 279.57436 * 19 18 17 36 36 H 1.08995 * 110.92652 * 156.29458 * 19 18 17 37 37 H 1.09003 * 110.48554 * 203.40557 * 20 19 18 38 38 H 1.09002 * 110.59872 * 80.82256 * 20 19 18 39 39 H 1.08998 * 110.03552 * 238.56616 * 21 17 8 40 40 H 1.08996 * 110.03248 * 359.97438 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 3.7055 -0.8185 1.7984 7 6 4.0216 -1.4396 3.1604 8 7 5.4740 -1.5193 3.3356 9 6 6.1528 -2.6356 2.9254 10 1 7.1260 -2.5380 2.4676 11 6 5.5899 -3.8927 3.0982 12 7 4.6369 -4.0704 3.9884 13 14 6.1851 -5.3323 2.0670 14 1 7.6334 -5.5509 2.3116 15 1 5.4294 -6.5547 2.4407 16 1 5.9653 -5.0353 0.6287 17 6 6.2000 -0.4049 3.9496 18 6 7.2045 0.1907 2.9415 19 6 8.4351 0.5622 3.8070 20 6 8.5015 -0.6027 4.8258 21 6 7.0241 -0.9087 5.1473 22 1 -0.3633 0.5970 0.8365 23 1 -0.3633 0.4260 -0.9352 24 1 -0.3633 -1.0229 0.0988 25 1 1.7611 -1.7370 1.6665 26 1 1.7612 -0.1171 2.4042 27 1 4.1328 0.1829 1.7473 28 1 4.1336 -1.4369 1.0094 29 1 3.5943 -2.4411 3.2110 30 1 3.5935 -0.8216 3.9497 31 1 4.1937 -4.9304 4.0593 32 1 5.4985 0.3630 4.2756 33 1 7.4764 -0.5511 2.1905 34 1 6.7880 1.0796 2.4678 35 1 8.2755 1.5124 4.3166 36 1 9.3406 0.5977 3.2014 37 1 9.0315 -0.2921 5.7263 38 1 8.9836 -1.4735 4.3817 39 1 6.7231 -0.3848 6.0545 40 1 6.8835 -1.9824 5.2721 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078003527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:22 Heat of formation + Delta-G solvation = -89.242675 kcal Electronic energy + Delta-G solvation = -20332.759046 eV Core-core repulsion = 17274.026281 eV Total energy + Delta-G solvation = -3058.732765 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.40097 -37.93157 -37.00499 -36.60754 -34.34644 -32.54186 -30.36835 -29.31455 -28.41540 -27.63513 -24.63501 -22.29005 -21.31671 -20.72822 -19.74849 -18.31762 -17.37106 -17.17231 -16.95204 -16.83803 -16.41849 -16.05856 -15.42992 -14.94442 -14.66304 -14.18810 -14.02764 -13.88455 -13.78104 -13.33753 -13.11257 -13.01609 -12.96848 -12.74250 -12.70782 -12.55774 -12.24693 -12.11497 -11.87831 -11.80115 -11.74438 -11.72332 -11.35880 -11.28102 -11.21008 -11.03478 -10.43290 -8.50021 -7.73813 -5.40773 -0.84954 1.44376 1.47578 1.53427 1.96896 2.52706 2.80359 3.18206 3.27172 3.57509 3.98179 3.98715 4.03037 4.06996 4.14510 4.29701 4.35795 4.51679 4.64222 4.71401 4.77883 4.90789 4.95711 4.98176 4.99484 5.00718 5.09868 5.22045 5.24377 5.34810 5.39874 5.59831 5.63031 5.69573 5.76426 5.88832 6.54253 7.24384 7.94330 8.45652 9.16748 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.006316 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.098778 B = 4431.787967 C = 5610.240268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.629 4.629 2 S 2.414 3.586 3 O -0.988 6.988 4 O -0.997 6.997 5 C -0.592 4.592 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.593 5.593 9 C -0.243 4.243 10 H 0.049 0.951 11 C -0.031 4.031 12 N -0.911 5.911 13 Si 0.937 3.063 14 H -0.279 1.279 15 H -0.291 1.291 16 H -0.285 1.285 17 C 0.158 3.842 18 C -0.135 4.135 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.127 4.127 22 H 0.158 0.842 23 H 0.140 0.860 24 H 0.151 0.849 25 H 0.144 0.856 26 H 0.159 0.841 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.249 0.751 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.056 0.944 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.317 9.291 -1.771 11.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.782 4.782 2 S 2.603 3.397 3 O -0.985 6.985 4 O -0.994 6.994 5 C -0.723 4.723 6 C -0.167 4.167 7 C 0.026 3.974 8 N -0.313 5.313 9 C -0.374 4.374 10 H 0.066 0.934 11 C -0.228 4.228 12 N -0.555 5.555 13 Si 0.766 3.234 14 H -0.205 1.205 15 H -0.216 1.216 16 H -0.212 1.212 17 C 0.052 3.948 18 C -0.174 4.174 19 C -0.149 4.149 20 C -0.151 4.151 21 C -0.166 4.166 22 H 0.176 0.824 23 H 0.159 0.841 24 H 0.169 0.831 25 H 0.162 0.838 26 H 0.177 0.823 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.762 9.431 -2.333 11.837 hybrid contribution -0.202 -1.491 -0.015 1.505 sum -6.964 7.940 -2.348 10.819 Atomic orbital electron populations 1.30026 1.20681 1.13911 1.13610 1.07692 0.80498 0.74149 0.77387 1.93510 1.81401 1.36387 1.87202 1.93522 1.81483 1.67749 1.56623 1.30181 1.04700 1.15015 1.22376 1.21838 0.91462 1.01170 1.02224 1.20857 0.84545 1.00415 0.91624 1.44148 1.03150 1.15241 1.68720 1.18942 1.02745 0.84588 1.31105 0.93355 1.25637 1.00373 0.98918 0.97895 1.70150 1.28626 1.23957 1.32758 0.85832 0.78102 0.80067 0.79445 1.20481 1.21648 1.21178 1.21321 0.92898 0.89178 0.91423 1.22794 0.96827 0.99238 0.98561 1.22400 0.97323 0.98130 0.97018 1.22219 0.95899 0.97895 0.99113 1.22435 0.95749 1.00455 0.97969 0.82400 0.84144 0.83056 0.83808 0.82255 0.92099 0.93583 0.91239 0.94422 0.94120 0.92306 0.93550 0.92213 0.90212 0.91368 0.90744 0.93793 0.92502 0.94047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -7.13 10.62 113.37 1.20 -5.92 16 2 S 2.41 58.83 5.36 -56.49 -0.30 58.53 16 3 O -0.99 -31.23 18.10 -127.37 -2.31 -33.53 16 4 O -1.00 -34.40 18.10 -127.37 -2.30 -36.71 16 5 C -0.59 -14.96 5.81 71.98 0.42 -14.55 16 6 C -0.13 -4.77 5.55 30.59 0.17 -4.60 16 7 C 0.15 6.75 5.28 86.38 0.46 7.21 16 8 N -0.59 -28.48 2.38 -674.02 -1.60 -30.09 16 9 C -0.24 -13.01 7.75 84.03 0.65 -12.36 16 10 H 0.05 2.67 6.94 -2.91 -0.02 2.65 16 11 C -0.03 -1.68 4.96 84.86 0.42 -1.26 16 12 N -0.91 -51.26 11.48 21.65 0.25 -51.01 16 13 Si 0.94 44.79 29.61 68.60 2.03 46.82 16 14 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 15 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 16 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 17 C 0.16 6.49 3.42 45.72 0.16 6.65 16 18 C -0.13 -4.97 6.43 31.70 0.20 -4.76 16 19 C -0.11 -3.33 6.91 31.91 0.22 -3.11 16 20 C -0.11 -3.78 6.83 31.67 0.22 -3.57 16 21 C -0.13 -5.03 6.24 31.32 0.20 -4.84 16 22 H 0.16 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.15 1.15 8.14 -2.39 -0.02 1.14 16 25 H 0.14 3.23 8.14 -2.39 -0.02 3.21 16 26 H 0.16 2.87 8.14 -2.39 -0.02 2.85 16 27 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.07 3.47 5.55 -2.39 -0.01 3.46 16 30 H 0.04 1.53 7.91 -2.39 -0.02 1.51 16 31 H 0.25 13.67 8.32 -92.70 -0.77 12.90 16 32 H 0.06 2.25 7.81 -2.39 -0.02 2.23 16 33 H 0.05 1.95 6.64 -2.38 -0.02 1.94 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.04 2.01 7.17 -2.39 -0.02 1.99 16 Total: -1.00 -74.82 332.32 1.07 -73.75 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.99 Total: 13.36 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 4.31 Total: -41.12 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -1.36 Total: -81.10 kcal Atomic # 8 Polarization: -65.63 SS G_CDS: -4.61 Total: -70.24 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 58.83 SS G_CDS: -0.30 Total: 58.53 kcal Total: -74.82 1.07 -73.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.490 kcal (2) G-P(sol) polarization free energy of solvation -74.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds