Wall clock time and date at job start Mon Mar 30 2020 02:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00037 * 2 1 4 4 H 1.48506 * 109.47312 * 270.00306 * 3 2 1 5 5 H 1.48502 * 109.47187 * 30.00307 * 3 2 1 6 6 H 1.48504 * 109.47331 * 150.00267 * 3 2 1 7 7 C 1.37870 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00192 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00132 * 359.97438 * 7 2 1 10 10 N 1.46891 * 109.47577 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00150 * 170.00078 * 10 9 7 12 12 C 1.53241 * 109.33966 * 187.25745 * 11 10 9 13 13 N 1.47079 * 108.52173 * 306.16709 * 12 11 10 14 14 C 1.34774 * 120.88655 * 231.16321 * 13 12 11 15 15 O 1.21510 * 120.00311 * 174.11261 * 14 13 12 16 16 C 1.48152 * 119.99579 * 354.11250 * 14 13 12 17 17 C 1.39811 * 120.92398 * 322.80228 * 16 14 13 18 18 C 1.38152 * 119.00260 * 179.75760 * 17 16 14 19 19 N 1.31817 * 120.89411 * 0.53155 * 18 17 16 20 20 C 1.31810 * 122.04463 * 359.74430 * 19 18 17 21 21 C 1.38141 * 120.90120 * 359.97252 * 20 19 18 22 22 C 1.47084 * 118.23620 * 51.19043 * 13 12 11 23 23 C 1.46897 * 111.00199 * 294.30691 * 10 9 7 24 24 H 0.97005 * 119.99970 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46983 * 60.00052 * 9 7 2 26 26 H 1.08998 * 109.47064 * 300.00405 * 9 7 2 27 27 H 1.08999 * 109.49459 * 307.21538 * 11 10 9 28 28 H 1.08997 * 109.49479 * 67.30123 * 11 10 9 29 29 H 1.09005 * 109.63415 * 65.88216 * 12 11 10 30 30 H 1.08998 * 109.62977 * 186.46021 * 12 11 10 31 31 H 1.08004 * 120.50294 * 0.02562 * 17 16 14 32 32 H 1.08004 * 119.55273 * 180.27548 * 18 17 16 33 33 H 1.08008 * 119.54448 * 179.97438 * 20 19 18 34 34 H 1.07998 * 120.50066 * 179.97438 * 21 20 19 35 35 H 1.09000 * 109.63141 * 189.10342 * 22 13 12 36 36 H 1.09002 * 109.63230 * 68.51909 * 22 13 12 37 37 H 1.09004 * 109.49145 * 292.70035 * 23 10 9 38 38 H 1.08992 * 109.49385 * 52.75790 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2055 -3.6156 -0.0018 11 6 1.5212 -4.8935 0.2363 12 6 2.5640 -6.0033 0.4079 13 7 3.4609 -5.9859 -0.7576 14 6 3.7111 -7.1117 -1.4549 15 8 4.3675 -7.0607 -2.4762 16 6 3.1858 -8.4117 -0.9761 17 6 3.1369 -8.7078 0.3894 18 6 2.6347 -9.9302 0.7921 19 7 2.2157 -10.8141 -0.0915 20 6 2.2495 -10.5773 -1.3877 21 6 2.7308 -9.3787 -1.8776 22 6 4.0781 -4.7073 -1.1417 23 6 2.9758 -3.6484 -1.2522 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6247 -2.5570 0.8896 27 1 0.9167 -4.8195 1.1403 28 1 0.8791 -5.1261 -0.6132 29 1 3.1403 -5.8271 1.3162 30 1 2.0634 -6.9695 0.4703 31 1 3.4824 -7.9900 1.1187 32 1 2.5886 -10.1664 1.8450 33 1 1.8961 -11.3308 -2.0761 34 1 2.7560 -9.1917 -2.9410 35 1 4.5786 -4.8166 -2.1038 36 1 4.7999 -4.4063 -0.3823 37 1 2.3133 -3.8983 -2.0810 38 1 3.4257 -2.6714 -1.4280 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078526681.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:59 Heat of formation + Delta-G solvation = 21.860258 kcal Electronic energy + Delta-G solvation = -20963.350589 eV Core-core repulsion = 17806.284409 eV Total energy + Delta-G solvation = -3157.066180 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.94545 -39.40245 -37.59250 -34.67508 -33.05750 -32.37857 -31.59736 -30.68279 -28.43410 -25.93265 -24.63230 -23.94145 -23.04034 -22.09780 -20.86904 -19.31844 -17.68231 -16.88576 -16.41462 -16.19421 -15.89576 -15.22917 -15.13875 -14.76664 -14.51966 -14.08270 -14.03848 -13.74033 -13.67666 -13.54144 -12.94740 -12.32459 -12.13055 -11.86885 -11.35195 -11.28779 -10.91623 -10.82711 -10.69387 -10.60326 -10.35886 -10.07297 -9.93867 -9.61690 -9.44408 -9.29046 -8.63515 -8.50359 -7.41509 -6.10365 -4.12570 0.56637 0.80093 2.63154 2.89735 3.27397 3.34090 3.37711 3.54803 4.13326 4.18202 4.35378 4.53351 4.65705 4.72168 4.77818 5.10178 5.23211 5.24162 5.29343 5.36219 5.45574 5.47718 5.57959 5.69538 5.76966 5.87527 5.90495 6.11222 6.27763 6.31570 6.43963 6.60933 7.14772 7.21148 7.34053 7.62063 7.68843 7.93987 8.00939 8.05614 8.41240 8.94487 9.52338 11.00444 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.037418 B = 0.003736 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.127359 B = 7493.542883 C = 7857.936765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.039 3.961 12 C 0.102 3.898 13 N -0.597 5.597 14 C 0.555 3.445 15 O -0.537 6.537 16 C -0.077 4.077 17 C -0.145 4.145 18 C 0.095 3.905 19 N -0.474 5.474 20 C 0.096 3.904 21 C -0.122 4.122 22 C 0.114 3.886 23 C 0.051 3.949 24 H 0.262 0.738 25 H -0.009 1.009 26 H 0.032 0.968 27 H 0.084 0.916 28 H 0.027 0.973 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.147 0.853 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.144 0.856 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.025 0.975 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.589 -17.674 0.673 18.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.090 4.090 12 C -0.021 4.021 13 N -0.329 5.329 14 C 0.342 3.658 15 O -0.414 6.414 16 C -0.089 4.089 17 C -0.165 4.165 18 C -0.061 4.061 19 N -0.183 5.183 20 C -0.061 4.061 21 C -0.143 4.143 22 C -0.007 4.007 23 C -0.078 4.078 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.050 0.950 27 H 0.102 0.898 28 H 0.045 0.955 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.164 0.836 32 H 0.180 0.820 33 H 0.179 0.821 34 H 0.161 0.839 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.044 0.956 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.788 -18.201 0.816 18.837 hybrid contribution -0.002 1.730 -0.883 1.943 sum 4.786 -16.470 -0.067 17.152 Atomic orbital electron populations 1.69953 1.06110 1.26921 1.50704 1.24989 0.94867 0.99392 0.95281 0.86491 0.79810 0.82994 0.78094 1.20696 1.21228 1.19706 1.21126 0.93490 0.89830 1.50489 0.91767 1.19733 0.89979 0.87161 0.96247 1.62103 1.28006 1.02517 1.33386 1.22408 0.94759 0.90763 1.01104 1.22329 0.92000 0.99658 0.88112 1.48142 1.46263 1.08436 1.30099 1.18260 0.80548 0.83502 0.83452 1.90771 1.40697 1.86297 1.23684 1.20398 0.98997 0.95143 0.94328 1.22566 0.99554 0.99000 0.95379 1.22789 0.94395 0.89128 0.99823 1.67562 1.14156 1.33487 1.03142 1.22781 0.95801 0.95465 0.92028 1.22274 0.97150 0.93559 1.01311 1.21953 0.96010 0.81134 1.01632 1.22347 0.95133 0.99171 0.91188 0.92832 0.99082 0.94970 0.89809 0.95473 0.90146 0.89528 0.83554 0.82005 0.82061 0.83858 0.89162 0.90482 0.95640 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.04 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.51 -13.76 8.41 -34.44 -0.29 -14.05 16 8 H 0.06 1.70 7.13 -52.48 -0.37 1.32 16 9 C 0.19 4.81 4.72 -4.98 -0.02 4.79 16 10 N -0.53 -10.72 4.62 -235.77 -1.09 -11.81 16 11 C 0.04 0.64 5.62 -3.70 -0.02 0.62 16 12 C 0.10 1.30 4.99 -3.60 -0.02 1.28 16 13 N -0.60 -8.68 3.01 -173.45 -0.52 -9.20 16 14 C 0.56 8.24 7.42 -12.19 -0.09 8.15 16 15 O -0.54 -9.58 16.38 5.36 0.09 -9.49 16 16 C -0.08 -0.93 5.23 -104.65 -0.55 -1.48 16 17 C -0.14 -1.39 7.51 -39.02 -0.29 -1.69 16 18 C 0.10 0.86 11.17 -17.59 -0.20 0.66 16 19 N -0.47 -4.97 10.34 -13.30 -0.14 -5.10 16 20 C 0.10 0.91 11.17 -17.60 -0.20 0.71 16 21 C -0.12 -1.31 9.74 -39.03 -0.38 -1.69 16 22 C 0.11 1.79 6.61 -3.60 -0.02 1.77 16 23 C 0.05 0.94 5.46 -3.70 -0.02 0.92 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 26 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 27 H 0.08 1.30 7.99 -51.93 -0.41 0.88 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 30 H 0.09 0.93 4.80 -51.93 -0.25 0.68 16 31 H 0.15 1.18 6.34 -52.48 -0.33 0.85 16 32 H 0.16 0.98 8.06 -52.48 -0.42 0.55 16 33 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 34 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.09 1.41 7.04 -51.93 -0.37 1.05 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.10 1.97 6.67 -51.93 -0.35 1.62 16 LS Contribution 313.01 15.07 4.72 4.72 Total: -1.00 -31.93 313.01 -8.43 -40.36 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -5.01 Total: -1.66 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.20 Total: 1.45 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -1.01 Total: -51.42 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.93 -8.43 -40.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078526681.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.224 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds