Wall clock time and date at job start Mon Mar 30 2020 02:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00037 * 2 1 4 4 H 1.48506 * 109.47312 * 270.00306 * 3 2 1 5 5 H 1.48502 * 109.47187 * 30.00307 * 3 2 1 6 6 H 1.48504 * 109.47331 * 150.00267 * 3 2 1 7 7 C 1.37870 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00192 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00132 * 359.97438 * 7 2 1 10 10 N 1.46891 * 109.47577 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00150 * 170.00078 * 10 9 7 12 12 C 1.53241 * 109.33966 * 187.25745 * 11 10 9 13 13 N 1.47079 * 108.52173 * 306.16709 * 12 11 10 14 14 C 1.34774 * 120.88655 * 231.16321 * 13 12 11 15 15 O 1.21510 * 120.00311 * 174.11261 * 14 13 12 16 16 C 1.48152 * 119.99579 * 354.11250 * 14 13 12 17 17 C 1.39811 * 120.92398 * 322.80228 * 16 14 13 18 18 C 1.38152 * 119.00260 * 179.75760 * 17 16 14 19 19 N 1.31817 * 120.89411 * 0.53155 * 18 17 16 20 20 C 1.31810 * 122.04463 * 359.74430 * 19 18 17 21 21 C 1.38141 * 120.90120 * 359.97252 * 20 19 18 22 22 C 1.47084 * 118.23620 * 51.19043 * 13 12 11 23 23 C 1.46897 * 111.00199 * 294.30691 * 10 9 7 24 24 H 0.97005 * 119.99970 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46983 * 60.00052 * 9 7 2 26 26 H 1.08998 * 109.47064 * 300.00405 * 9 7 2 27 27 H 1.08999 * 109.49459 * 307.21538 * 11 10 9 28 28 H 1.08997 * 109.49479 * 67.30123 * 11 10 9 29 29 H 1.09005 * 109.63415 * 65.88216 * 12 11 10 30 30 H 1.08998 * 109.62977 * 186.46021 * 12 11 10 31 31 H 1.08004 * 120.50294 * 0.02562 * 17 16 14 32 32 H 1.08004 * 119.55273 * 180.27548 * 18 17 16 33 33 H 1.08008 * 119.54448 * 179.97438 * 20 19 18 34 34 H 1.07998 * 120.50066 * 179.97438 * 21 20 19 35 35 H 1.09000 * 109.63141 * 189.10342 * 22 13 12 36 36 H 1.09002 * 109.63230 * 68.51909 * 22 13 12 37 37 H 1.09004 * 109.49145 * 292.70035 * 23 10 9 38 38 H 1.08992 * 109.49385 * 52.75790 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2055 -3.6156 -0.0018 11 6 1.5212 -4.8935 0.2363 12 6 2.5640 -6.0033 0.4079 13 7 3.4609 -5.9859 -0.7576 14 6 3.7111 -7.1117 -1.4549 15 8 4.3675 -7.0607 -2.4762 16 6 3.1858 -8.4117 -0.9761 17 6 3.1369 -8.7078 0.3894 18 6 2.6347 -9.9302 0.7921 19 7 2.2157 -10.8141 -0.0915 20 6 2.2495 -10.5773 -1.3877 21 6 2.7308 -9.3787 -1.8776 22 6 4.0781 -4.7073 -1.1417 23 6 2.9758 -3.6484 -1.2522 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6247 -2.5570 0.8896 27 1 0.9167 -4.8195 1.1403 28 1 0.8791 -5.1261 -0.6132 29 1 3.1403 -5.8271 1.3162 30 1 2.0634 -6.9695 0.4703 31 1 3.4824 -7.9900 1.1187 32 1 2.5886 -10.1664 1.8450 33 1 1.8961 -11.3308 -2.0761 34 1 2.7560 -9.1917 -2.9410 35 1 4.5786 -4.8166 -2.1038 36 1 4.7999 -4.4063 -0.3823 37 1 2.3133 -3.8983 -2.0810 38 1 3.4257 -2.6714 -1.4280 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078526681.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:59 Heat of formation + Delta-G solvation = -0.422987 kcal Electronic energy + Delta-G solvation = -20964.316863 eV Core-core repulsion = 17806.284409 eV Total energy + Delta-G solvation = -3158.032454 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.92289 -40.42166 -38.99526 -36.16471 -34.55078 -33.79133 -32.41646 -31.87629 -30.10607 -27.53888 -25.80608 -24.90663 -24.13312 -23.76506 -22.20437 -20.50466 -18.79053 -18.50452 -17.80164 -17.12997 -16.85593 -16.70469 -16.29836 -16.09322 -15.99914 -15.43280 -15.32843 -14.86170 -14.69056 -14.63371 -14.32120 -14.05960 -13.54680 -13.10533 -12.78898 -12.70828 -12.61099 -12.43036 -12.37280 -12.20231 -11.77471 -11.48453 -11.30863 -10.91033 -10.63350 -10.46470 -10.14041 -9.89869 -9.11365 -8.21750 -6.31724 -0.28656 0.08639 1.42576 1.42990 1.53137 1.54680 1.78876 2.39905 2.77744 3.10004 3.14564 3.21760 3.52093 3.81014 3.86027 3.94584 3.99040 4.06418 4.17010 4.20530 4.35955 4.49358 4.54365 4.65391 4.76733 4.79962 4.81590 4.89155 4.95680 5.02200 5.13894 5.19884 5.35964 5.60826 5.62669 6.00916 6.12014 6.27053 6.54053 6.83702 6.85804 6.90526 7.38334 8.89442 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.037418 B = 0.003736 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.127359 B = 7493.542883 C = 7857.936765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.523 4.523 8 H 0.067 0.933 9 C 0.208 3.792 10 N -0.535 5.535 11 C 0.035 3.965 12 C 0.112 3.888 13 N -0.600 5.600 14 C 0.556 3.444 15 O -0.574 6.574 16 C -0.097 4.097 17 C -0.140 4.140 18 C 0.100 3.900 19 N -0.490 5.490 20 C 0.099 3.901 21 C -0.132 4.132 22 C 0.126 3.874 23 C 0.055 3.945 24 H 0.264 0.736 25 H -0.043 1.043 26 H 0.012 0.988 27 H 0.093 0.907 28 H 0.014 0.986 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.166 0.834 32 H 0.195 0.805 33 H 0.188 0.812 34 H 0.142 0.858 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.007 0.993 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.608 -18.941 2.045 19.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.561 4.561 8 H 0.085 0.915 9 C 0.081 3.919 10 N -0.260 5.260 11 C -0.094 4.094 12 C -0.010 4.010 13 N -0.331 5.331 14 C 0.345 3.655 15 O -0.454 6.454 16 C -0.108 4.108 17 C -0.160 4.160 18 C -0.057 4.057 19 N -0.200 5.200 20 C -0.057 4.057 21 C -0.153 4.153 22 C 0.003 3.997 23 C -0.074 4.074 24 H 0.073 0.927 25 H -0.025 1.025 26 H 0.031 0.969 27 H 0.111 0.889 28 H 0.032 0.968 29 H 0.121 0.879 30 H 0.132 0.868 31 H 0.183 0.817 32 H 0.212 0.788 33 H 0.205 0.795 34 H 0.160 0.840 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.026 0.974 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.812 -19.497 2.201 20.463 hybrid contribution -0.365 2.039 -1.317 2.454 sum 5.447 -17.458 0.884 18.309 Atomic orbital electron populations 1.70081 1.07770 1.27918 1.51765 1.25894 0.95689 1.03190 0.94800 0.85399 0.78714 0.78330 0.78286 1.20143 1.20907 1.18576 1.21462 0.93781 0.90872 1.50029 0.91465 1.19389 0.90042 0.88819 0.93603 1.62030 1.27045 1.02979 1.33902 1.22568 0.95883 0.90019 1.00942 1.22419 0.91107 0.99315 0.88117 1.48201 1.46358 1.08002 1.30573 1.18700 0.79752 0.84371 0.82683 1.90746 1.42389 1.86960 1.25319 1.20301 1.00727 0.93988 0.95826 1.22748 0.99053 0.99757 0.94436 1.23330 0.92868 0.88346 1.01129 1.67652 1.14577 1.34135 1.03616 1.23163 0.94879 0.95370 0.92304 1.22382 0.97624 0.93986 1.01312 1.21744 0.94841 0.80864 1.02238 1.22281 0.95435 0.99644 0.90003 0.92708 1.02545 0.96946 0.88874 0.96799 0.87892 0.86756 0.81670 0.78808 0.79501 0.84007 0.89308 0.89039 0.97449 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.32 13.29 21.44 0.28 -55.04 16 2 C 0.00 0.13 5.46 84.65 0.46 0.60 16 3 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 4 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.52 -28.62 8.41 25.60 0.22 -28.40 16 8 H 0.07 3.56 7.13 -2.91 -0.02 3.54 16 9 C 0.21 10.67 4.72 85.56 0.40 11.08 16 10 N -0.53 -21.61 4.62 -899.83 -4.16 -25.77 16 11 C 0.03 1.11 5.62 86.38 0.49 1.60 16 12 C 0.11 2.60 4.99 86.35 0.43 3.03 16 13 N -0.60 -16.63 3.01 -820.97 -2.47 -19.10 16 14 C 0.56 15.96 7.42 86.88 0.64 16.60 16 15 O -0.57 -20.47 16.38 -3.75 -0.06 -20.53 16 16 C -0.10 -2.16 5.23 -19.88 -0.10 -2.26 16 17 C -0.14 -2.24 7.51 22.63 0.17 -2.07 16 18 C 0.10 1.44 11.17 84.67 0.95 2.38 16 19 N -0.49 -8.84 10.34 -196.00 -2.03 -10.86 16 20 C 0.10 1.65 11.17 84.67 0.95 2.60 16 21 C -0.13 -2.66 9.74 22.63 0.22 -2.44 16 22 C 0.13 3.85 6.61 86.35 0.57 4.42 16 23 C 0.06 2.10 5.46 86.39 0.47 2.57 16 24 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 25 H -0.04 -2.47 8.12 -2.38 -0.02 -2.49 16 26 H 0.01 0.68 7.97 -2.39 -0.02 0.66 16 27 H 0.09 2.80 7.99 -2.39 -0.02 2.78 16 28 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.10 2.01 8.04 -2.38 -0.02 1.99 16 30 H 0.11 2.07 4.80 -2.39 -0.01 2.06 16 31 H 0.17 1.97 6.34 -2.91 -0.02 1.95 16 32 H 0.20 1.45 8.06 -2.91 -0.02 1.42 16 33 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 35 H 0.09 2.78 7.04 -2.39 -0.02 2.76 16 36 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.08 3.40 6.67 -2.39 -0.02 3.38 16 Total: -1.00 -70.32 313.01 0.52 -69.80 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 1.06 Total: 6.52 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 5.86 Total: 9.69 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -8.37 Total: -110.77 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.06 Total: -20.53 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -70.32 0.52 -69.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078526681.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.379 kcal (2) G-P(sol) polarization free energy of solvation -70.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds