Wall clock time and date at job start Mon Mar 30 2020 01:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99945 * 2 1 4 4 H 1.48504 * 109.47162 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47416 * 299.99888 * 3 2 1 6 6 H 1.48502 * 109.47338 * 60.00144 * 3 2 1 7 7 C 1.38808 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00480 * 197.03304 * 7 2 1 9 9 N 1.36942 * 119.99967 * 17.03932 * 7 2 1 10 10 C 1.47083 * 120.88110 * 206.63444 * 9 7 2 11 11 C 1.53240 * 108.51871 * 231.20081 * 10 9 7 12 12 N 1.46896 * 109.34029 * 306.17305 * 11 10 9 13 13 C 1.39044 * 110.99916 * 187.25485 * 12 11 10 14 14 C 1.39229 * 119.93076 * 359.72212 * 13 12 11 15 15 C 1.37603 * 120.07025 * 179.72308 * 14 13 12 16 16 C 1.39801 * 119.92637 * 0.55242 * 15 14 13 17 17 C 1.47527 * 120.06510 * 179.70072 * 16 15 14 18 18 N 1.34767 * 119.99912 * 0.02562 * 17 16 15 19 19 O 1.21596 * 119.99765 * 180.02562 * 17 16 15 20 20 C 1.39791 * 119.86561 * 359.72206 * 16 15 14 21 21 C 1.37609 * 119.93310 * 359.97438 * 20 16 15 22 22 C 1.46894 * 111.27313 * 63.10131 * 12 11 10 23 23 C 1.47084 * 120.87982 * 26.64930 * 9 7 2 24 24 H 0.97005 * 119.99783 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.62898 * 111.49349 * 10 9 7 26 26 H 1.09000 * 109.78890 * 351.00798 * 10 9 7 27 27 H 1.08999 * 109.49030 * 186.21078 * 11 10 9 28 28 H 1.08999 * 109.51258 * 66.14529 * 11 10 9 29 29 H 1.08001 * 119.96313 * 359.97438 * 14 13 12 30 30 H 1.07996 * 120.03762 * 180.29490 * 15 14 13 31 31 H 0.96998 * 120.00856 * 359.97438 * 18 17 16 32 32 H 0.97007 * 119.99742 * 180.02562 * 18 17 16 33 33 H 1.08003 * 120.03660 * 179.97438 * 20 16 15 34 34 H 1.07996 * 119.96870 * 180.02562 * 21 20 16 35 35 H 1.09006 * 109.48926 * 56.85832 * 22 12 11 36 36 H 1.08999 * 109.49459 * 176.93256 * 22 12 11 37 37 H 1.09004 * 109.62729 * 248.50341 * 23 9 7 38 38 H 1.09001 * 109.62692 * 8.89228 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0547 -1.2226 0.2745 9 7 1.3707 -2.3622 -0.3465 10 6 1.8302 -3.6608 0.1689 11 6 2.0035 -4.6200 -1.0135 12 7 0.7573 -4.6655 -1.7898 13 6 0.8190 -5.6453 -2.7745 14 6 1.9692 -6.4172 -2.9152 15 6 2.0313 -7.3914 -3.8850 16 6 0.9422 -7.5979 -4.7369 17 6 1.0080 -8.6371 -5.7820 18 7 2.1185 -9.3888 -5.9158 19 8 0.0603 -8.8153 -6.5226 20 6 -0.2090 -6.8173 -4.5968 21 6 -0.2674 -5.8488 -3.6210 22 6 0.4434 -3.3536 -2.3714 23 6 0.2061 -2.3425 -1.2447 24 1 -0.4850 0.8401 0.0004 25 1 1.0902 -4.0628 0.8610 26 1 2.7833 -3.5374 0.6831 27 1 2.2370 -5.6176 -0.6414 28 1 2.8160 -4.2699 -1.6502 29 1 2.8119 -6.2538 -2.2599 30 1 2.9219 -7.9930 -3.9906 31 1 2.8748 -9.2464 -5.3252 32 1 2.1619 -10.0719 -6.6032 33 1 -1.0518 -6.9742 -5.2537 34 1 -1.1566 -5.2458 -3.5119 35 1 1.2776 -3.0207 -2.9891 36 1 -0.4545 -3.4328 -2.9842 37 1 -0.6900 -2.6178 -0.6885 38 1 0.0843 -1.3440 -1.6644 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080645259.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:34 Heat of formation + Delta-G solvation = 26.885970 kcal Electronic energy + Delta-G solvation = -20848.129806 eV Core-core repulsion = 17691.281557 eV Total energy + Delta-G solvation = -3156.848249 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.38300 -39.23083 -37.12223 -34.57500 -33.86785 -31.66351 -31.30432 -30.00732 -29.33717 -26.51752 -23.92703 -23.64392 -22.47931 -21.53066 -20.47446 -19.25829 -18.37685 -17.26526 -16.88784 -16.17775 -15.18512 -15.13529 -14.81153 -14.77921 -14.34372 -14.03758 -13.63904 -13.52552 -13.42464 -13.25350 -12.94670 -12.31989 -12.14554 -11.62501 -11.29113 -11.05690 -10.78342 -10.68525 -10.50225 -10.25621 -10.14305 -9.89031 -9.88157 -9.81492 -9.52286 -9.01327 -8.59813 -7.63972 -6.80561 -5.88236 -3.30358 0.90120 1.41806 2.82660 3.31840 3.40150 3.40747 3.41879 3.81487 4.11863 4.41922 4.70830 4.79704 4.94086 5.21331 5.29187 5.33598 5.43934 5.52992 5.62782 5.79864 5.84868 5.95436 6.03291 6.08948 6.19332 6.22798 6.34835 6.39765 6.49952 6.60008 6.74589 6.79453 7.06295 7.17828 7.39802 7.51742 7.52837 7.70878 8.13428 8.32082 9.09881 9.72692 10.30080 11.20949 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.040618 B = 0.003601 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.181893 B = 7774.348436 C = 7968.426661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.146 3.854 11 C 0.036 3.964 12 N -0.483 5.483 13 C 0.163 3.837 14 C -0.192 4.192 15 C -0.054 4.054 16 C -0.192 4.192 17 C 0.570 3.430 18 N -0.856 5.856 19 O -0.551 6.551 20 C -0.028 4.028 21 C -0.160 4.160 22 C 0.038 3.962 23 C 0.174 3.826 24 H 0.255 0.745 25 H 0.028 0.972 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.134 0.866 30 H 0.121 0.879 31 H 0.400 0.600 32 H 0.401 0.599 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.030 0.970 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.064 -14.628 -7.606 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.019 3.981 11 C -0.092 4.092 12 N -0.195 5.195 13 C 0.061 3.939 14 C -0.213 4.213 15 C -0.073 4.073 16 C -0.197 4.197 17 C 0.357 3.643 18 N -0.420 5.420 19 O -0.429 6.429 20 C -0.048 4.048 21 C -0.181 4.181 22 C -0.087 4.087 23 C 0.048 3.952 24 H 0.065 0.935 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.151 0.849 30 H 0.139 0.861 31 H 0.229 0.771 32 H 0.232 0.768 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.889 -14.441 -7.558 16.756 hybrid contribution 1.379 0.717 -0.324 1.588 sum 5.269 -13.724 -7.882 16.680 Atomic orbital electron populations 1.70026 1.05250 1.25592 1.53780 1.25046 0.95336 0.98487 1.00731 0.86207 0.79313 0.83786 0.77358 1.20251 1.21484 1.21632 1.19228 0.92687 0.84611 1.41973 0.91412 1.44143 1.34223 1.01342 1.52140 1.21016 0.98368 0.86413 0.92292 1.22911 0.88730 1.00416 0.97141 1.58653 1.33796 1.06262 1.20755 1.19502 0.92493 0.93372 0.88552 1.21286 0.97845 1.00415 1.01729 1.21017 0.96635 0.96034 0.93627 1.19613 0.97408 1.01920 1.00730 1.18271 0.82026 0.80774 0.83184 1.43765 1.18320 1.40336 1.39571 1.90798 1.36695 1.69815 1.45632 1.21046 0.96440 0.91818 0.95496 1.20820 0.98776 1.01124 0.97331 1.23138 0.99947 0.86631 0.99003 1.20952 0.89230 0.96742 0.88297 0.93509 0.95430 0.91963 0.90938 0.93613 0.84870 0.86143 0.77082 0.76821 0.84864 0.84947 0.94065 0.90960 0.95200 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.43 11.15 55.49 0.62 -24.81 16 2 C 0.00 0.07 4.93 -17.43 -0.09 -0.01 16 3 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.26 -6.77 9.63 -15.06 -0.15 -6.92 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 9 N -0.60 -14.39 3.04 -172.01 -0.52 -14.91 16 10 C 0.15 2.91 6.69 -3.60 -0.02 2.89 16 11 C 0.04 0.60 4.29 -3.70 -0.02 0.58 16 12 N -0.48 -8.24 4.66 -170.83 -0.80 -9.04 16 13 C 0.16 2.43 5.64 -83.86 -0.47 1.96 16 14 C -0.19 -2.43 8.79 -39.45 -0.35 -2.78 16 15 C -0.05 -0.58 9.53 -39.23 -0.37 -0.96 16 16 C -0.19 -2.41 5.88 -104.95 -0.62 -3.02 16 17 C 0.57 7.06 8.03 -12.48 -0.10 6.96 16 18 N -0.86 -6.63 8.82 30.45 0.27 -6.37 16 19 O -0.55 -8.89 17.17 5.28 0.09 -8.80 16 20 C -0.03 -0.38 9.58 -39.23 -0.38 -0.76 16 21 C -0.16 -2.25 9.11 -39.45 -0.36 -2.61 16 22 C 0.04 0.71 5.42 -3.71 -0.02 0.69 16 23 C 0.17 4.00 5.43 -3.60 -0.02 3.98 16 24 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 27 H 0.07 1.01 6.88 -51.93 -0.36 0.65 16 28 H 0.05 0.76 7.79 -51.93 -0.40 0.36 16 29 H 0.13 1.53 5.77 -52.49 -0.30 1.23 16 30 H 0.12 0.86 6.39 -52.49 -0.34 0.52 16 31 H 0.40 2.02 6.85 -40.82 -0.28 1.74 16 32 H 0.40 2.51 8.93 -40.82 -0.36 2.14 16 33 H 0.13 1.72 7.64 -52.48 -0.40 1.32 16 34 H 0.13 1.78 7.13 -52.49 -0.37 1.41 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.20 6.63 -51.93 -0.34 0.85 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 2.43 6.11 -51.93 -0.32 2.11 16 LS Contribution 307.41 15.07 4.63 4.63 Total: -1.00 -31.66 307.41 -8.40 -40.07 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -4.71 Total: 3.19 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -2.96 Total: 0.00 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.43 Total: -55.12 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.66 -8.40 -40.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080645259.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.954 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds