Wall clock time and date at job start Mon Mar 30 2020 01:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99858 * 2 1 4 4 H 1.48500 * 109.47047 * 270.00209 * 3 2 1 5 5 H 1.48503 * 109.47045 * 29.99953 * 3 2 1 6 6 H 1.48495 * 109.47069 * 150.00169 * 3 2 1 7 7 C 1.37873 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00087 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00227 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47290 * 180.02562 * 9 7 2 11 11 C 1.46493 * 120.00162 * 90.00080 * 10 9 7 12 12 C 1.50706 * 109.47190 * 269.99566 * 11 10 9 13 13 C 1.38675 * 120.41529 * 89.99861 * 12 11 10 14 14 C 1.38631 * 118.41792 * 179.97438 * 13 12 11 15 15 C 1.38221 * 119.16077 * 0.25627 * 14 13 12 16 16 N 1.31860 * 120.76509 * 359.49797 * 15 14 13 17 17 C 1.31882 * 121.72556 * 0.49011 * 16 15 14 18 18 C 1.34776 * 119.99880 * 269.99539 * 10 9 7 19 19 O 1.21589 * 120.00153 * 180.02562 * 18 10 9 20 20 N 1.34783 * 119.99889 * 0.02562 * 18 10 9 21 21 C 1.46498 * 119.99692 * 179.97438 * 20 18 10 22 22 C 1.52997 * 117.50045 * 223.62282 * 21 20 18 23 23 C 1.52998 * 60.00221 * 252.51248 * 22 21 20 24 24 H 0.97001 * 120.00447 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47037 * 59.99256 * 9 7 2 26 26 H 1.09001 * 109.46860 * 300.00250 * 9 7 2 27 27 H 1.09008 * 109.47517 * 149.99653 * 11 10 9 28 28 H 1.08998 * 109.47567 * 29.99502 * 11 10 9 29 29 H 1.07998 * 120.79161 * 359.96013 * 13 12 11 30 30 H 1.08002 * 120.41548 * 179.97438 * 14 13 12 31 31 H 1.08002 * 119.62066 * 179.74470 * 15 14 13 32 32 H 1.07993 * 119.62126 * 179.75488 * 17 16 15 33 33 H 0.96991 * 119.99793 * 0.02562 * 20 18 10 34 34 H 1.09002 * 115.55384 * 9.33366 * 21 20 18 35 35 H 1.09006 * 117.49890 * 0.02562 * 22 21 20 36 36 H 1.09000 * 117.50102 * 145.02079 * 22 21 20 37 37 H 1.08993 * 117.50020 * 252.50653 * 23 22 21 38 38 H 1.09006 * 117.51940 * 107.48049 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 6 2.6782 -4.1699 1.2673 12 6 3.9210 -3.4377 1.7036 13 6 3.8266 -2.3097 2.5047 14 6 4.9964 -1.6686 2.8821 15 6 6.2091 -2.1685 2.4461 16 7 6.2612 -3.2467 1.6888 17 6 5.1691 -3.8822 1.3109 18 6 2.6419 -4.1243 -1.1686 19 8 3.4317 -5.0487 -1.1684 20 7 2.2051 -3.6112 -2.3359 21 6 2.6825 -4.1671 -3.6045 22 6 3.0719 -3.1797 -4.7064 23 6 1.7852 -3.9978 -4.8321 24 1 -0.4851 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8880 27 1 2.9067 -5.2277 1.1367 28 1 1.9043 -4.0564 2.0265 29 1 2.8646 -1.9392 2.8266 30 1 4.9604 -0.7872 3.5051 31 1 7.1248 -1.6725 2.7322 32 1 5.2511 -4.7599 0.6871 33 1 1.5754 -2.8736 -2.3360 34 1 3.2601 -5.0882 -3.5265 35 1 2.9734 -2.1165 -4.4874 36 1 3.9061 -3.4510 -5.3535 37 1 1.7727 -4.8073 -5.5619 38 1 0.8394 -3.4732 -4.6958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080779798.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:12 Heat of formation + Delta-G solvation = 35.176274 kcal Electronic energy + Delta-G solvation = -21546.108942 eV Core-core repulsion = 18389.620187 eV Total energy + Delta-G solvation = -3156.488754 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.93900 -39.15980 -36.90588 -35.11083 -33.07619 -32.37439 -31.65777 -30.74958 -27.57749 -25.75923 -23.21349 -22.89779 -22.16193 -22.12039 -21.03896 -19.40533 -17.25724 -16.77810 -16.57729 -16.13700 -15.68527 -15.08240 -14.84025 -14.41810 -14.24901 -14.02747 -13.35035 -12.96811 -12.85409 -12.49599 -12.41036 -12.35676 -11.92082 -11.50917 -11.37391 -11.13692 -11.04498 -10.90153 -10.82711 -10.32088 -10.23961 -9.84812 -9.46327 -9.21039 -8.99921 -8.66780 -8.51252 -8.27590 -7.66781 -6.25520 -4.32267 1.56644 1.82977 3.16671 3.24833 3.28555 3.39553 3.74271 4.24834 4.30663 4.33291 4.74772 4.90772 5.07474 5.09304 5.23912 5.26054 5.28436 5.41328 5.47706 5.59176 5.78121 5.80256 5.98762 6.07030 6.15016 6.22340 6.28434 6.30649 6.63300 6.64897 6.84196 7.03491 7.15248 7.21162 7.36058 7.70732 7.79364 7.98179 8.43617 8.59755 8.83097 9.30813 9.38663 10.80536 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.011081 B = 0.008825 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.173252 B = 3171.991510 C = 4700.501377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.061 0.939 9 C 0.240 3.760 10 N -0.612 5.612 11 C 0.183 3.817 12 C -0.142 4.142 13 C -0.035 4.035 14 C -0.182 4.182 15 C 0.087 3.913 16 N -0.497 5.497 17 C 0.115 3.885 18 C 0.715 3.285 19 O -0.618 6.618 20 N -0.713 5.713 21 C 0.109 3.891 22 C -0.201 4.201 23 C -0.197 4.197 24 H 0.265 0.735 25 H 0.031 0.969 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.127 0.873 31 H 0.145 0.855 32 H 0.155 0.845 33 H 0.409 0.591 34 H 0.133 0.867 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.193 -4.659 -0.242 5.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.569 4.569 8 H 0.079 0.921 9 C 0.120 3.880 10 N -0.345 5.345 11 C 0.058 3.942 12 C -0.145 4.145 13 C -0.062 4.062 14 C -0.202 4.202 15 C -0.070 4.070 16 N -0.206 5.206 17 C -0.042 4.042 18 C 0.417 3.583 19 O -0.500 6.500 20 N -0.368 5.368 21 C 0.001 3.999 22 C -0.240 4.240 23 C -0.235 4.235 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.155 0.845 30 H 0.145 0.855 31 H 0.163 0.837 32 H 0.173 0.827 33 H 0.247 0.753 34 H 0.151 0.849 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.363 -5.506 -0.466 7.040 hybrid contribution -0.782 2.167 0.134 2.308 sum 3.581 -3.339 -0.332 4.907 Atomic orbital electron populations 1.69910 1.05913 1.27291 1.49883 1.24908 0.94754 0.99127 0.94857 0.86601 0.79995 0.83219 0.78393 1.20592 1.21106 1.19714 1.21505 0.93622 0.90230 1.51563 0.92065 1.19350 0.87347 0.83026 0.98270 1.47360 1.47385 1.36945 1.02821 1.19965 0.92286 0.96577 0.85355 1.21305 0.97093 0.97778 0.98374 1.21532 0.98891 0.92400 0.93363 1.22049 0.93786 1.01468 1.02931 1.22605 0.97314 0.92827 0.94289 1.67668 1.32711 1.08448 1.11774 1.22753 0.87330 0.98574 0.95543 1.15727 0.80308 0.81601 0.80688 1.90780 1.39547 1.32774 1.86897 1.44621 1.50002 1.39057 1.03108 1.21276 1.00712 0.98606 0.79319 1.23422 0.98467 0.98733 1.03353 1.23363 0.95532 1.03479 1.01151 0.92539 0.95155 0.94428 0.89834 0.90018 0.84549 0.85515 0.83713 0.82732 0.75301 0.84894 0.88471 0.88553 0.88402 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.41 13.29 55.43 0.74 -22.67 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.53 -12.99 8.83 -34.44 -0.30 -13.29 16 8 H 0.06 1.61 7.58 -52.48 -0.40 1.21 16 9 C 0.24 5.34 4.97 -5.20 -0.03 5.32 16 10 N -0.61 -12.37 2.44 -182.19 -0.44 -12.81 16 11 C 0.18 3.24 5.60 -5.19 -0.03 3.21 16 12 C -0.14 -2.59 5.48 -104.48 -0.57 -3.16 16 13 C -0.04 -0.62 9.08 -39.28 -0.36 -0.98 16 14 C -0.18 -2.95 10.11 -39.44 -0.40 -3.35 16 15 C 0.09 1.42 11.18 -17.55 -0.20 1.23 16 16 N -0.50 -9.26 10.36 -13.25 -0.14 -9.40 16 17 C 0.12 2.16 10.86 -17.55 -0.19 1.97 16 18 C 0.71 14.90 8.28 -86.91 -0.72 14.18 16 19 O -0.62 -13.72 15.05 5.29 0.08 -13.64 16 20 N -0.71 -13.45 5.43 -58.67 -0.32 -13.77 16 21 C 0.11 1.73 6.43 -67.93 -0.44 1.29 16 22 C -0.20 -2.78 10.46 -26.73 -0.28 -3.06 16 23 C -0.20 -2.53 10.46 -26.73 -0.28 -2.81 16 24 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 25 H 0.03 0.70 6.37 -51.93 -0.33 0.37 16 26 H 0.04 0.87 7.89 -51.93 -0.41 0.46 16 27 H 0.08 1.42 7.37 -51.92 -0.38 1.04 16 28 H 0.08 1.29 7.85 -51.93 -0.41 0.89 16 29 H 0.14 2.36 8.06 -52.49 -0.42 1.94 16 30 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.16 2.93 7.61 -52.49 -0.40 2.53 16 33 H 0.41 7.91 6.56 -40.82 -0.27 7.64 16 34 H 0.13 2.17 7.40 -51.93 -0.38 1.79 16 35 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 328.30 15.07 4.95 4.95 Total: -1.00 -28.56 328.30 -9.12 -37.68 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -5.07 Total: 12.34 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -3.89 Total: 2.13 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.16 Total: -58.65 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.08 Total: -13.64 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.56 -9.12 -37.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080779798.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.853 kcal (2) G-P(sol) polarization free energy of solvation -28.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds