Wall clock time and date at job start Mon Mar 30 2020 01:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99858 * 2 1 4 4 H 1.48500 * 109.47047 * 270.00209 * 3 2 1 5 5 H 1.48503 * 109.47045 * 29.99953 * 3 2 1 6 6 H 1.48495 * 109.47069 * 150.00169 * 3 2 1 7 7 C 1.37873 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00087 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00227 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47290 * 180.02562 * 9 7 2 11 11 C 1.46493 * 120.00162 * 90.00080 * 10 9 7 12 12 C 1.50706 * 109.47190 * 269.99566 * 11 10 9 13 13 C 1.38675 * 120.41529 * 89.99861 * 12 11 10 14 14 C 1.38631 * 118.41792 * 179.97438 * 13 12 11 15 15 C 1.38221 * 119.16077 * 0.25627 * 14 13 12 16 16 N 1.31860 * 120.76509 * 359.49797 * 15 14 13 17 17 C 1.31882 * 121.72556 * 0.49011 * 16 15 14 18 18 C 1.34776 * 119.99880 * 269.99539 * 10 9 7 19 19 O 1.21589 * 120.00153 * 180.02562 * 18 10 9 20 20 N 1.34783 * 119.99889 * 0.02562 * 18 10 9 21 21 C 1.46498 * 119.99692 * 179.97438 * 20 18 10 22 22 C 1.52997 * 117.50045 * 223.62282 * 21 20 18 23 23 C 1.52998 * 60.00221 * 252.51248 * 22 21 20 24 24 H 0.97001 * 120.00447 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47037 * 59.99256 * 9 7 2 26 26 H 1.09001 * 109.46860 * 300.00250 * 9 7 2 27 27 H 1.09008 * 109.47517 * 149.99653 * 11 10 9 28 28 H 1.08998 * 109.47567 * 29.99502 * 11 10 9 29 29 H 1.07998 * 120.79161 * 359.96013 * 13 12 11 30 30 H 1.08002 * 120.41548 * 179.97438 * 14 13 12 31 31 H 1.08002 * 119.62066 * 179.74470 * 15 14 13 32 32 H 1.07993 * 119.62126 * 179.75488 * 17 16 15 33 33 H 0.96991 * 119.99793 * 0.02562 * 20 18 10 34 34 H 1.09002 * 115.55384 * 9.33366 * 21 20 18 35 35 H 1.09006 * 117.49890 * 0.02562 * 22 21 20 36 36 H 1.09000 * 117.50102 * 145.02079 * 22 21 20 37 37 H 1.08993 * 117.50020 * 252.50653 * 23 22 21 38 38 H 1.09006 * 117.51940 * 107.48049 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 6 2.6782 -4.1699 1.2673 12 6 3.9210 -3.4377 1.7036 13 6 3.8266 -2.3097 2.5047 14 6 4.9964 -1.6686 2.8821 15 6 6.2091 -2.1685 2.4461 16 7 6.2612 -3.2467 1.6888 17 6 5.1691 -3.8822 1.3109 18 6 2.6419 -4.1243 -1.1686 19 8 3.4317 -5.0487 -1.1684 20 7 2.2051 -3.6112 -2.3359 21 6 2.6825 -4.1671 -3.6045 22 6 3.0719 -3.1797 -4.7064 23 6 1.7852 -3.9978 -4.8321 24 1 -0.4851 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8880 27 1 2.9067 -5.2277 1.1367 28 1 1.9043 -4.0564 2.0265 29 1 2.8646 -1.9392 2.8266 30 1 4.9604 -0.7872 3.5051 31 1 7.1248 -1.6725 2.7322 32 1 5.2511 -4.7599 0.6871 33 1 1.5754 -2.8736 -2.3360 34 1 3.2601 -5.0882 -3.5265 35 1 2.9734 -2.1165 -4.4874 36 1 3.9061 -3.4510 -5.3535 37 1 1.7727 -4.8073 -5.5619 38 1 0.8394 -3.4732 -4.6958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080779798.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:11 Heat of formation + Delta-G solvation = 19.304301 kcal Electronic energy + Delta-G solvation = -21546.797202 eV Core-core repulsion = 18389.620187 eV Total energy + Delta-G solvation = -3157.177015 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.41267 -40.60729 -38.18469 -36.76483 -34.78428 -33.99603 -33.03391 -32.17318 -29.36169 -27.24589 -24.97710 -24.34007 -23.50173 -23.23216 -22.35223 -20.93650 -18.87468 -18.59309 -17.98338 -17.60344 -17.06502 -16.56496 -16.53017 -15.98486 -15.59477 -15.37018 -14.80104 -14.49673 -14.36305 -14.11272 -13.87461 -13.72032 -13.47085 -13.24450 -12.79823 -12.59443 -12.52842 -12.41056 -12.25214 -12.11169 -11.71201 -11.38500 -11.14319 -10.65999 -10.54953 -10.39249 -9.92055 -9.75690 -9.23311 -8.19042 -6.30724 0.21202 0.44995 1.36358 1.41613 1.48845 1.92168 2.22803 2.39974 2.92048 3.08974 3.11828 3.22837 3.60698 3.88139 3.96189 4.00868 4.11355 4.14276 4.16896 4.22301 4.48954 4.70242 4.76814 4.77601 4.87861 4.88506 4.93697 5.04433 5.18388 5.24513 5.29775 5.45771 5.63200 5.72602 5.82081 5.88094 6.07586 6.20063 6.73035 7.07163 7.10049 7.40825 7.73244 8.85520 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.011081 B = 0.008825 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.173252 B = 3171.991510 C = 4700.501377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.031 3.969 3 Si 0.940 3.060 4 H -0.282 1.282 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.043 0.957 9 C 0.255 3.745 10 N -0.612 5.612 11 C 0.180 3.820 12 C -0.150 4.150 13 C -0.047 4.047 14 C -0.179 4.179 15 C 0.084 3.916 16 N -0.516 5.516 17 C 0.101 3.899 18 C 0.706 3.294 19 O -0.636 6.636 20 N -0.713 5.713 21 C 0.074 3.926 22 C -0.194 4.194 23 C -0.169 4.169 24 H 0.266 0.734 25 H 0.023 0.977 26 H 0.030 0.970 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.137 0.863 30 H 0.156 0.844 31 H 0.180 0.820 32 H 0.145 0.855 33 H 0.405 0.595 34 H 0.126 0.874 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 -3.839 -0.456 5.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.170 4.170 3 Si 0.766 3.234 4 H -0.208 1.208 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.062 0.938 9 C 0.134 3.866 10 N -0.346 5.346 11 C 0.056 3.944 12 C -0.153 4.153 13 C -0.074 4.074 14 C -0.199 4.199 15 C -0.073 4.073 16 N -0.225 5.225 17 C -0.055 4.055 18 C 0.408 3.592 19 O -0.520 6.520 20 N -0.367 5.367 21 C -0.033 4.033 22 C -0.233 4.233 23 C -0.207 4.207 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.048 0.952 27 H 0.105 0.895 28 H 0.117 0.883 29 H 0.155 0.845 30 H 0.174 0.826 31 H 0.197 0.803 32 H 0.162 0.838 33 H 0.242 0.758 34 H 0.144 0.856 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.836 -4.697 -0.696 6.778 hybrid contribution -0.891 1.905 0.198 2.112 sum 3.945 -2.793 -0.498 4.859 Atomic orbital electron populations 1.69975 1.06799 1.27879 1.50849 1.25420 0.95295 1.01396 0.94846 0.85832 0.78945 0.80533 0.78058 1.20840 1.20645 1.19782 1.21478 0.92642 0.91197 1.50853 0.93832 1.19039 0.87243 0.82923 0.97386 1.47346 1.47115 1.36442 1.03655 1.20120 0.92812 0.96644 0.84787 1.21298 0.96847 0.98278 0.98877 1.21677 0.99664 0.92446 0.93569 1.22398 0.93085 1.01927 1.02474 1.23198 0.98897 0.92011 0.93168 1.67667 1.32719 1.09495 1.12648 1.22662 0.87870 0.98820 0.96169 1.15940 0.80354 0.81658 0.81255 1.90757 1.40405 1.33606 1.87187 1.44694 1.49611 1.38726 1.03676 1.21495 1.03374 0.99280 0.79121 1.23462 1.00008 0.97669 1.02127 1.23436 0.94851 1.03449 0.98993 0.92460 0.95962 0.95186 0.89492 0.88323 0.84520 0.82594 0.80281 0.83790 0.75779 0.85640 0.89691 0.86452 0.85607 0.88619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.61 13.29 21.44 0.28 -47.33 16 2 C 0.03 1.54 5.46 84.65 0.46 2.01 16 3 Si 0.94 40.71 29.54 68.60 2.03 42.73 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.52 -25.47 8.83 25.60 0.23 -25.25 16 8 H 0.04 2.28 7.58 -2.91 -0.02 2.25 16 9 C 0.26 11.39 4.97 85.63 0.43 11.82 16 10 N -0.61 -24.97 2.44 -848.58 -2.07 -27.04 16 11 C 0.18 6.41 5.60 85.64 0.48 6.89 16 12 C -0.15 -5.44 5.48 -19.77 -0.11 -5.54 16 13 C -0.05 -1.61 9.08 22.47 0.20 -1.40 16 14 C -0.18 -5.42 10.11 22.36 0.23 -5.20 16 15 C 0.08 2.59 11.18 84.68 0.95 3.54 16 16 N -0.52 -18.84 10.36 -195.85 -2.03 -20.87 16 17 C 0.10 3.83 10.86 84.67 0.92 4.75 16 18 C 0.71 29.82 8.28 179.05 1.48 31.30 16 19 O -0.64 -28.72 15.05 -4.00 -0.06 -28.78 16 20 N -0.71 -27.09 5.43 -457.80 -2.49 -29.57 16 21 C 0.07 2.31 6.43 44.99 0.29 2.60 16 22 C -0.19 -5.08 10.46 30.59 0.32 -4.76 16 23 C -0.17 -4.00 10.46 30.59 0.32 -3.68 16 24 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 25 H 0.02 1.04 6.37 -2.39 -0.02 1.03 16 26 H 0.03 1.39 7.89 -2.39 -0.02 1.37 16 27 H 0.09 3.00 7.37 -2.38 -0.02 2.99 16 28 H 0.10 3.10 7.85 -2.39 -0.02 3.08 16 29 H 0.14 4.61 8.06 -2.91 -0.02 4.59 16 30 H 0.16 3.74 8.06 -2.91 -0.02 3.71 16 31 H 0.18 4.13 8.06 -2.91 -0.02 4.10 16 32 H 0.14 5.63 7.61 -2.91 -0.02 5.61 16 33 H 0.40 15.81 6.56 -92.71 -0.61 15.20 16 34 H 0.13 4.10 7.40 -2.39 -0.02 4.08 16 35 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -59.87 328.30 2.32 -57.55 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: 0.46 Total: 36.23 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 6.19 Total: 17.07 kcal Atomic # 7 Polarization: -118.50 SS G_CDS: -6.30 Total: -124.81 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.06 Total: -28.78 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.73 kcal Total: -59.87 2.32 -57.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080779798.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.850 kcal (2) G-P(sol) polarization free energy of solvation -59.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds