Wall clock time and date at job start Mon Mar 30 2020 01:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46822 * 113.81177 * 3 2 1 5 5 N 1.46494 * 109.47229 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99994 * 270.00529 * 5 4 3 7 7 C 1.50698 * 109.47180 * 269.99705 * 6 5 4 8 8 H 1.08000 * 119.99885 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00432 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00547 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99836 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46883 * 89.99997 * 11 9 7 13 13 H 1.48500 * 109.47243 * 210.00035 * 11 9 7 14 14 H 1.48501 * 109.46965 * 330.00523 * 11 9 7 15 15 C 1.34772 * 120.00276 * 90.00045 * 5 4 3 16 16 O 1.21281 * 120.00727 * 180.02562 * 15 5 4 17 17 C 1.50707 * 119.99738 * 0.02562 * 15 5 4 18 18 C 1.52996 * 109.47449 * 179.97438 * 17 15 5 19 19 N 1.46494 * 109.47444 * 180.02562 * 18 17 15 20 20 C 1.36345 * 125.63345 * 90.00307 * 19 18 17 21 21 C 1.34850 * 108.21864 * 179.97438 * 20 19 18 22 22 C 1.40894 * 107.41649 * 0.02562 * 21 20 19 23 23 C 1.34846 * 107.41755 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.47026 * 353.81713 * 3 2 1 25 25 H 1.08992 * 109.47106 * 233.81232 * 3 2 1 26 26 H 1.09007 * 109.46943 * 59.99783 * 4 3 2 27 27 H 1.09001 * 109.47526 * 300.00045 * 4 3 2 28 28 H 1.08998 * 109.47249 * 29.99795 * 6 5 4 29 29 H 1.09009 * 109.47269 * 149.99899 * 6 5 4 30 30 H 0.96996 * 120.00150 * 179.97438 * 10 9 7 31 31 H 1.09009 * 109.46880 * 59.99997 * 17 15 5 32 32 H 1.08993 * 109.47272 * 300.00141 * 17 15 5 33 33 H 1.09006 * 109.46659 * 59.99780 * 18 17 15 34 34 H 1.09005 * 109.47449 * 300.00857 * 18 17 15 35 35 H 1.08006 * 125.89009 * 359.71336 * 20 19 18 36 36 H 1.08004 * 126.29266 * 180.02562 * 21 20 19 37 37 H 1.07995 * 126.28821 * 179.97438 * 22 21 20 38 38 H 1.08002 * 125.89342 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.5833 -1.3197 5 7 4.5826 0.5845 -1.3196 6 6 5.3141 1.7459 -0.8073 7 6 5.5646 2.7177 -1.9316 8 1 5.2137 2.4929 -2.9279 9 6 6.2418 3.8938 -1.6883 10 7 6.4609 4.7416 -2.6695 11 14 6.8482 4.2830 0.0351 12 1 8.2217 3.7462 0.2096 13 1 6.8629 5.7546 0.2342 14 1 5.9421 3.6576 1.0317 15 6 5.2575 -0.4827 -1.7906 16 8 6.4703 -0.4820 -1.7900 17 6 4.5051 -1.6773 -2.3179 18 6 5.5002 -2.7402 -2.7877 19 7 4.7688 -3.9011 -3.3009 20 6 4.3723 -4.0826 -4.5927 21 6 3.7304 -5.2657 -4.6745 22 6 3.7300 -5.8352 -3.3858 23 6 4.3722 -4.9787 -2.5658 24 1 2.9718 -1.0209 0.1107 25 1 2.9711 0.6075 0.8294 26 1 2.7538 1.6048 -1.4305 27 1 2.7546 -0.0236 -2.1492 28 1 4.7245 2.2330 -0.0307 29 1 6.2668 1.4201 -0.3897 30 1 6.9370 5.5691 -2.4983 31 1 3.8786 -1.3711 -3.1558 32 1 3.8784 -2.0899 -1.5274 33 1 6.1271 -3.0464 -1.9501 34 1 6.1268 -2.3273 -3.5784 35 1 4.5396 -3.3953 -5.4089 36 1 3.2963 -5.6974 -5.5643 37 1 3.2952 -6.7834 -3.1061 38 1 4.5431 -5.1217 -1.5090 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081284060.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:33 Heat of formation + Delta-G solvation = 42.840443 kcal Electronic energy + Delta-G solvation = -20523.436195 eV Core-core repulsion = 17367.279784 eV Total energy + Delta-G solvation = -3156.156411 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.13496 -39.53300 -37.01186 -35.52132 -34.03924 -32.83503 -31.12441 -29.93703 -28.77262 -27.85156 -24.55967 -24.02133 -22.05908 -20.45951 -19.91968 -18.68466 -17.87132 -17.56173 -16.91388 -16.24386 -15.91172 -15.44140 -14.80343 -14.56601 -14.25290 -13.91575 -13.77008 -13.44676 -13.05247 -12.84525 -12.69058 -12.56687 -12.35611 -12.26905 -12.14095 -12.04058 -11.85178 -11.64110 -11.35776 -11.13765 -10.91851 -10.63605 -10.29522 -9.68589 -9.36073 -8.69412 -8.61476 -8.16863 -8.04977 -6.18804 -4.19261 2.27179 2.61496 2.71601 2.87583 3.03875 3.05845 3.21017 3.26210 3.29150 3.49564 4.06377 4.29615 4.68302 4.72482 4.78962 4.89324 4.98293 5.09751 5.15405 5.21581 5.23264 5.34834 5.41894 5.61276 5.65080 5.70161 5.76420 5.94125 6.26831 6.31620 6.48381 6.76105 6.99008 7.05507 7.24499 7.38014 7.46767 7.48143 7.92427 8.32864 8.64667 8.84184 9.40178 10.94340 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015912 B = 0.004735 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.270196 B = 5912.107763 C = 7088.824434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.214 3.786 3 C -0.050 4.050 4 C 0.116 3.884 5 N -0.589 5.589 6 C 0.214 3.786 7 C -0.534 4.534 8 H 0.075 0.925 9 C 0.074 3.926 10 N -0.894 5.894 11 Si 0.875 3.125 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.514 3.486 16 O -0.533 6.533 17 C -0.159 4.159 18 C 0.119 3.881 19 N -0.445 5.445 20 C -0.013 4.013 21 C -0.207 4.207 22 C -0.207 4.207 23 C -0.017 4.017 24 H 0.106 0.894 25 H 0.116 0.884 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.033 0.967 29 H 0.040 0.960 30 H 0.266 0.734 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.160 0.840 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.152 -15.576 2.585 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.104 4.104 3 C -0.091 4.091 4 C -0.010 4.010 5 N -0.320 5.320 6 C 0.094 3.906 7 C -0.573 4.573 8 H 0.093 0.907 9 C -0.129 4.129 10 N -0.532 5.532 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.190 1.190 15 C 0.301 3.699 16 O -0.410 6.410 17 C -0.200 4.200 18 C -0.002 4.002 19 N -0.121 5.121 20 C -0.143 4.143 21 C -0.232 4.232 22 C -0.231 4.231 23 C -0.147 4.147 24 H 0.124 0.876 25 H 0.134 0.866 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.177 0.823 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.903 -15.062 2.683 16.399 hybrid contribution 0.672 0.452 0.784 1.127 sum -5.231 -14.610 3.467 15.901 Atomic orbital electron populations 1.81225 1.12988 1.08971 1.08499 1.29020 0.95036 0.93055 0.93283 1.19865 0.81602 1.04978 1.02660 1.21361 0.81575 1.03627 0.94472 1.47874 1.05072 1.17438 1.61623 1.19754 0.92545 0.82867 0.95425 1.21282 1.37500 1.02307 0.96176 0.90670 1.24856 0.95145 0.95915 0.96970 1.69885 1.41113 1.10546 1.31688 0.86870 0.80146 0.77815 0.84949 1.19868 1.21046 1.18983 1.20095 0.87934 0.83497 0.78424 1.90715 1.13692 1.81329 1.55266 1.22101 0.99690 0.95007 1.03189 1.21613 0.93139 0.83754 1.01736 1.44281 1.43521 1.16175 1.08081 1.21899 1.05233 1.00367 0.86825 1.20876 1.07400 0.96828 0.98092 1.20866 1.07379 1.01099 0.93793 1.21836 1.05576 0.89475 0.97778 0.87571 0.86632 0.88384 0.90212 0.94892 0.94180 0.92427 0.88378 0.88734 0.88411 0.88221 0.82285 0.85053 0.85099 0.82415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.24 18.54 42.15 0.78 -5.45 16 2 C 0.21 2.42 15.43 -20.76 -0.32 2.10 16 3 C -0.05 -0.45 6.03 -29.52 -0.18 -0.63 16 4 C 0.12 1.40 5.17 -4.04 -0.02 1.38 16 5 N -0.59 -9.72 2.46 -175.06 -0.43 -10.15 16 6 C 0.21 4.51 4.23 -5.19 -0.02 4.49 16 7 C -0.53 -14.04 9.94 -34.44 -0.34 -14.38 16 8 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 10 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 11 Si 0.88 20.11 27.47 -169.99 -4.67 15.44 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.27 -5.59 6.54 56.52 0.37 -5.22 16 15 C 0.51 8.34 7.67 -10.98 -0.08 8.26 16 16 O -0.53 -10.96 15.56 5.56 0.09 -10.88 16 17 C -0.16 -1.79 4.58 -27.88 -0.13 -1.92 16 18 C 0.12 1.35 5.38 -4.05 -0.02 1.33 16 19 N -0.45 -5.03 2.75 -117.13 -0.32 -5.35 16 20 C -0.01 -0.15 11.43 -16.75 -0.19 -0.34 16 21 C -0.21 -2.35 10.86 -39.78 -0.43 -2.78 16 22 C -0.21 -2.29 10.86 -39.78 -0.43 -2.72 16 23 C -0.02 -0.18 11.43 -16.75 -0.19 -0.37 16 24 H 0.11 0.75 7.22 -51.93 -0.38 0.37 16 25 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 27 H 0.08 0.82 6.44 -51.93 -0.33 0.49 16 28 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 29 H 0.04 0.91 6.85 -51.92 -0.36 0.55 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.10 1.06 7.40 -51.92 -0.38 0.67 16 32 H 0.09 0.85 7.19 -51.93 -0.37 0.48 16 33 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 34 H 0.10 1.22 8.10 -51.93 -0.42 0.80 16 35 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 333.20 15.07 5.02 5.02 Total: -1.00 -33.35 333.20 -6.38 -39.73 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.16 Total: 0.85 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.46 Total: -3.66 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.80 Total: -46.50 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.67 Total: 15.44 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.35 -6.38 -39.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081284060.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.570 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds