Wall clock time and date at job start Mon Mar 30 2020 01:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42108 * 108.57633 * 2 1 4 4 O 1.42098 * 108.57698 * 228.97734 * 2 1 3 5 5 C 1.81399 * 101.92169 * 114.48435 * 2 1 3 6 6 C 1.52998 * 109.47167 * 179.97438 * 5 2 1 7 7 C 1.52998 * 109.47221 * 180.02562 * 6 5 2 8 8 N 1.46902 * 109.46927 * 174.86660 * 7 6 5 9 9 C 1.46894 * 111.00102 * 75.74945 * 8 7 6 10 10 C 1.50700 * 109.47137 * 189.99753 * 9 8 7 11 11 H 1.08001 * 119.99793 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00479 * 179.97438 * 10 9 8 13 13 N 1.31523 * 119.99660 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00392 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47257 * 89.99988 * 14 12 10 16 16 H 1.48501 * 109.47241 * 209.99767 * 14 12 10 17 17 H 1.48507 * 109.46842 * 329.99849 * 14 12 10 18 18 C 1.46906 * 110.99505 * 199.69841 * 8 7 6 19 19 C 1.53001 * 109.46738 * 75.55035 * 18 8 7 20 20 C 1.53008 * 117.49644 * 243.45926 * 19 18 8 21 21 C 1.53000 * 117.49386 * 174.83957 * 19 18 8 22 22 H 1.09002 * 109.47478 * 305.51447 * 1 2 3 23 23 H 1.08998 * 109.47276 * 65.50899 * 1 2 3 24 24 H 1.09003 * 109.47462 * 185.51491 * 1 2 3 25 25 H 1.09001 * 109.46632 * 60.00627 * 5 2 1 26 26 H 1.08998 * 109.47460 * 300.00117 * 5 2 1 27 27 H 1.09004 * 109.46730 * 60.00108 * 6 5 2 28 28 H 1.08998 * 109.47227 * 300.00506 * 6 5 2 29 29 H 1.09003 * 109.46832 * 294.86307 * 7 6 5 30 30 H 1.08995 * 109.47031 * 54.86040 * 7 6 5 31 31 H 1.09004 * 109.47180 * 309.99721 * 9 8 7 32 32 H 1.09005 * 109.47668 * 69.99516 * 9 8 7 33 33 H 0.96997 * 119.99973 * 180.02562 * 13 12 10 34 34 H 1.08995 * 109.46740 * 195.54658 * 18 8 7 35 35 H 1.08997 * 109.47143 * 315.55002 * 18 8 7 36 36 H 1.08993 * 115.55390 * 29.16796 * 19 18 8 37 37 H 1.09002 * 117.49580 * 0.02562 * 20 19 18 38 38 H 1.08998 * 117.49497 * 145.02194 * 20 19 18 39 39 H 1.09004 * 117.49964 * 214.97486 * 21 19 18 40 40 H 1.09001 * 117.50336 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8195 1.7979 7 6 4.0215 -1.4405 3.1600 8 7 5.4723 -1.6342 3.2850 9 6 6.1530 -0.3594 3.5479 10 6 7.6428 -0.5510 3.4266 11 1 8.0439 -1.5226 3.1785 12 6 8.4940 0.5143 3.6312 13 7 8.0055 1.6979 3.9318 14 14 10.3406 0.2769 3.4801 15 1 10.7594 0.5319 2.0784 16 1 11.0374 1.2258 4.3852 17 1 10.6930 -1.1157 3.8565 18 6 5.7836 -2.6219 4.3271 19 6 5.4857 -4.0279 3.8023 20 6 4.3899 -4.8282 4.5091 21 6 5.8593 -5.2102 4.6987 22 1 -0.3634 0.5970 0.8365 23 1 -0.3634 0.4260 -0.9352 24 1 -0.3634 -1.0229 0.0988 25 1 1.7611 -1.7369 1.6664 26 1 1.7610 -0.1170 2.4043 27 1 4.1335 0.1817 1.7465 28 1 4.1328 -1.4383 1.0089 29 1 3.6741 -0.7764 3.9515 30 1 3.5175 -2.4031 3.2462 31 1 5.8223 0.3852 2.8237 32 1 5.9112 -0.0192 4.5549 33 1 8.6042 2.4474 4.0753 34 1 6.8381 -2.5492 4.5931 35 1 5.1723 -2.4257 5.2078 36 1 5.5907 -4.1598 2.7255 37 1 3.8809 -4.3529 5.3477 38 1 3.7735 -5.4868 3.8972 39 1 6.2096 -6.1202 4.2116 40 1 6.3168 -4.9864 5.6624 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514665.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:51 Heat of formation + Delta-G solvation = -48.831255 kcal Electronic energy + Delta-G solvation = -19624.330326 eV Core-core repulsion = 16567.349932 eV Total energy + Delta-G solvation = -3056.980394 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -37.98563 -36.93895 -36.04859 -35.86941 -33.42750 -32.15768 -29.80697 -27.48659 -27.05046 -24.11796 -22.29602 -21.87102 -20.38611 -19.68907 -18.82298 -16.77312 -16.41575 -16.18283 -16.00396 -15.33176 -15.05108 -14.47441 -14.11658 -13.81843 -13.71490 -13.44493 -13.37874 -12.84466 -12.08582 -12.01977 -11.98699 -11.93920 -11.72531 -11.68806 -11.57418 -11.27506 -11.05001 -10.91796 -10.64387 -10.62630 -10.37159 -10.31520 -10.06953 -9.59877 -9.48995 -9.12890 -8.40704 -7.28331 -6.00483 -4.01702 -0.05330 2.73475 3.34953 3.40973 3.44072 3.62205 3.95028 4.11104 4.42986 4.56790 4.61125 4.61839 4.93836 4.96299 5.19444 5.25095 5.35283 5.39371 5.42562 5.47873 5.61257 5.78708 5.85692 5.89509 6.06180 6.10219 6.30149 6.31150 6.36343 6.45335 6.57311 6.81370 7.29366 7.34229 7.82830 8.10566 8.20907 8.55278 9.06173 9.62584 11.10420 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.012865 B = 0.005309 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.975121 B = 5273.228213 C = 6989.531254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.661 4.661 2 S 2.420 3.580 3 O -0.936 6.936 4 O -0.940 6.940 5 C -0.602 4.602 6 C -0.107 4.107 7 C 0.066 3.934 8 N -0.536 5.536 9 C 0.189 3.811 10 C -0.509 4.509 11 H 0.064 0.936 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.092 3.908 19 C -0.132 4.132 20 C -0.193 4.193 21 C -0.183 4.183 22 H 0.126 0.874 23 H 0.126 0.874 24 H 0.125 0.875 25 H 0.129 0.871 26 H 0.129 0.871 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.027 0.973 30 H 0.064 0.936 31 H 0.035 0.965 32 H -0.010 1.010 33 H 0.261 0.739 34 H 0.092 0.908 35 H 0.021 0.979 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.732 -7.987 -2.136 17.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.810 4.810 2 S 2.602 3.398 3 O -0.934 6.934 4 O -0.937 6.937 5 C -0.732 4.732 6 C -0.146 4.146 7 C -0.064 4.064 8 N -0.260 5.260 9 C 0.064 3.936 10 C -0.547 4.547 11 H 0.083 0.917 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.725 3.275 15 H -0.206 1.206 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.037 4.037 19 C -0.151 4.151 20 C -0.230 4.230 21 C -0.221 4.221 22 H 0.145 0.855 23 H 0.144 0.856 24 H 0.144 0.856 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.039 0.961 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.944 -7.658 -3.211 17.096 hybrid contribution -0.054 0.033 1.382 1.383 sum -14.998 -7.626 -1.829 16.924 Atomic orbital electron populations 1.30332 1.27959 1.11204 1.11466 1.07911 0.77818 0.76000 0.78098 1.93620 1.78565 1.34557 1.86609 1.93593 1.78708 1.67050 1.54373 1.30281 1.07523 1.13280 1.22155 1.21321 0.88343 1.04033 1.00854 1.21931 0.91076 0.98897 0.94511 1.62005 1.05533 1.12659 1.45792 1.19812 0.93957 0.84747 0.95071 1.21167 0.90621 0.96029 1.46908 0.91735 1.24989 0.99055 0.95136 0.95386 1.69959 1.35076 1.00431 1.48265 0.86512 0.85143 0.77869 0.77973 1.20585 1.21394 1.19862 1.21577 1.02079 0.88629 0.91382 1.22486 1.01396 0.92503 0.98730 1.23021 0.91740 1.04738 1.03490 1.22893 0.97754 0.99559 1.01895 0.85519 0.85579 0.85588 0.85312 0.85286 0.89741 0.89511 0.95503 0.91711 0.94734 0.99180 0.92913 0.89014 0.96132 0.87253 0.89468 0.89553 0.89284 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.95 10.62 101.05 1.07 -2.88 16 2 S 2.42 26.01 5.36 -107.50 -0.58 25.43 16 3 O -0.94 -14.43 18.10 -57.83 -1.05 -15.48 16 4 O -0.94 -13.67 18.10 -57.83 -1.05 -14.72 16 5 C -0.60 -6.07 5.81 37.16 0.22 -5.86 16 6 C -0.11 -1.67 5.25 -26.73 -0.14 -1.81 16 7 C 0.07 1.11 4.81 -3.82 -0.02 1.10 16 8 N -0.54 -11.17 4.36 -236.07 -1.03 -12.20 16 9 C 0.19 4.85 4.55 -4.98 -0.02 4.83 16 10 C -0.51 -14.18 8.23 -34.44 -0.28 -14.46 16 11 H 0.06 1.78 7.31 -52.49 -0.38 1.40 16 12 C 0.06 1.58 5.46 -17.81 -0.10 1.49 16 13 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 14 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 C 0.09 1.73 5.07 -3.82 -0.02 1.71 16 19 C -0.13 -2.06 5.15 -90.62 -0.47 -2.53 16 20 C -0.19 -2.46 10.09 -26.72 -0.27 -2.73 16 21 C -0.18 -2.44 10.25 -26.73 -0.27 -2.71 16 22 H 0.13 0.54 8.14 -51.92 -0.42 0.12 16 23 H 0.13 0.70 8.14 -51.92 -0.42 0.27 16 24 H 0.13 0.50 8.14 -51.92 -0.42 0.08 16 25 H 0.13 0.92 8.14 -51.92 -0.42 0.49 16 26 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.08 1.51 6.96 -51.93 -0.36 1.15 16 28 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.03 0.46 8.00 -51.93 -0.42 0.04 16 30 H 0.06 0.95 7.22 -51.93 -0.37 0.57 16 31 H 0.03 0.95 6.72 -51.93 -0.35 0.60 16 32 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 34 H 0.09 1.95 6.58 -51.93 -0.34 1.61 16 35 H 0.02 0.38 7.73 -51.93 -0.40 -0.03 16 36 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 37 H 0.09 1.08 8.03 -51.93 -0.42 0.67 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 341.74 15.07 5.15 5.15 Total: -1.00 -35.74 341.74 -9.96 -45.71 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.83 Total: -0.74 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: -0.30 Total: -23.86 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.29 Total: -38.23 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -2.09 Total: -30.20 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 26.01 SS G_CDS: -0.58 Total: 25.43 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.74 -9.96 -45.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514665.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.125 kcal (2) G-P(sol) polarization free energy of solvation -35.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds