Wall clock time and date at job start Mon Mar 30 2020 01:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42108 * 108.57633 * 2 1 4 4 O 1.42098 * 108.57698 * 228.97734 * 2 1 3 5 5 C 1.81399 * 101.92169 * 114.48435 * 2 1 3 6 6 C 1.52998 * 109.47167 * 179.97438 * 5 2 1 7 7 C 1.52998 * 109.47221 * 180.02562 * 6 5 2 8 8 N 1.46902 * 109.46927 * 174.86660 * 7 6 5 9 9 C 1.46894 * 111.00102 * 75.74945 * 8 7 6 10 10 C 1.50700 * 109.47137 * 189.99753 * 9 8 7 11 11 H 1.08001 * 119.99793 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00479 * 179.97438 * 10 9 8 13 13 N 1.31523 * 119.99660 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00392 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47257 * 89.99988 * 14 12 10 16 16 H 1.48501 * 109.47241 * 209.99767 * 14 12 10 17 17 H 1.48507 * 109.46842 * 329.99849 * 14 12 10 18 18 C 1.46906 * 110.99505 * 199.69841 * 8 7 6 19 19 C 1.53001 * 109.46738 * 75.55035 * 18 8 7 20 20 C 1.53008 * 117.49644 * 243.45926 * 19 18 8 21 21 C 1.53000 * 117.49386 * 174.83957 * 19 18 8 22 22 H 1.09002 * 109.47478 * 305.51447 * 1 2 3 23 23 H 1.08998 * 109.47276 * 65.50899 * 1 2 3 24 24 H 1.09003 * 109.47462 * 185.51491 * 1 2 3 25 25 H 1.09001 * 109.46632 * 60.00627 * 5 2 1 26 26 H 1.08998 * 109.47460 * 300.00117 * 5 2 1 27 27 H 1.09004 * 109.46730 * 60.00108 * 6 5 2 28 28 H 1.08998 * 109.47227 * 300.00506 * 6 5 2 29 29 H 1.09003 * 109.46832 * 294.86307 * 7 6 5 30 30 H 1.08995 * 109.47031 * 54.86040 * 7 6 5 31 31 H 1.09004 * 109.47180 * 309.99721 * 9 8 7 32 32 H 1.09005 * 109.47668 * 69.99516 * 9 8 7 33 33 H 0.96997 * 119.99973 * 180.02562 * 13 12 10 34 34 H 1.08995 * 109.46740 * 195.54658 * 18 8 7 35 35 H 1.08997 * 109.47143 * 315.55002 * 18 8 7 36 36 H 1.08993 * 115.55390 * 29.16796 * 19 18 8 37 37 H 1.09002 * 117.49580 * 0.02562 * 20 19 18 38 38 H 1.08998 * 117.49497 * 145.02194 * 20 19 18 39 39 H 1.09004 * 117.49964 * 214.97486 * 21 19 18 40 40 H 1.09001 * 117.50336 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8195 1.7979 7 6 4.0215 -1.4405 3.1600 8 7 5.4723 -1.6342 3.2850 9 6 6.1530 -0.3594 3.5479 10 6 7.6428 -0.5510 3.4266 11 1 8.0439 -1.5226 3.1785 12 6 8.4940 0.5143 3.6312 13 7 8.0055 1.6979 3.9318 14 14 10.3406 0.2769 3.4801 15 1 10.7594 0.5319 2.0784 16 1 11.0374 1.2258 4.3852 17 1 10.6930 -1.1157 3.8565 18 6 5.7836 -2.6219 4.3271 19 6 5.4857 -4.0279 3.8023 20 6 4.3899 -4.8282 4.5091 21 6 5.8593 -5.2102 4.6987 22 1 -0.3634 0.5970 0.8365 23 1 -0.3634 0.4260 -0.9352 24 1 -0.3634 -1.0229 0.0988 25 1 1.7611 -1.7369 1.6664 26 1 1.7610 -0.1170 2.4043 27 1 4.1335 0.1817 1.7465 28 1 4.1328 -1.4383 1.0089 29 1 3.6741 -0.7764 3.9515 30 1 3.5175 -2.4031 3.2462 31 1 5.8223 0.3852 2.8237 32 1 5.9112 -0.0192 4.5549 33 1 8.6042 2.4474 4.0753 34 1 6.8381 -2.5492 4.5931 35 1 5.1723 -2.4257 5.2078 36 1 5.5907 -4.1598 2.7255 37 1 3.8809 -4.3529 5.3477 38 1 3.7735 -5.4868 3.8972 39 1 6.2096 -6.1202 4.2116 40 1 6.3168 -4.9864 5.6624 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081514665.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:51 Heat of formation + Delta-G solvation = -76.135246 kcal Electronic energy + Delta-G solvation = -19625.514316 eV Core-core repulsion = 16567.349932 eV Total energy + Delta-G solvation = -3058.164384 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.41773 -37.93539 -37.25800 -36.95545 -35.10239 -33.90597 -30.38064 -29.45687 -28.31630 -25.83846 -23.68114 -23.08866 -21.82286 -21.09745 -19.72146 -18.63843 -17.52946 -17.18531 -17.03891 -16.78499 -16.50122 -15.95422 -15.46282 -15.36766 -15.06581 -14.39658 -14.00107 -13.86284 -13.67189 -13.60783 -13.21794 -13.05473 -13.04862 -12.98301 -12.94348 -12.75704 -12.48624 -12.28205 -12.13999 -11.98745 -11.89129 -11.65402 -11.38264 -11.20837 -10.98871 -10.68308 -10.55797 -9.01044 -8.20846 -6.30328 -0.86224 1.39305 1.41621 1.52100 1.97151 2.39646 2.77857 2.98585 3.11451 3.18191 3.26734 3.81853 3.88387 4.05841 4.14097 4.15973 4.20885 4.22926 4.30430 4.42566 4.54725 4.70422 4.74829 4.83024 4.88167 4.93370 5.01283 5.02252 5.09126 5.20676 5.24185 5.30931 5.34119 5.46592 5.65955 6.07577 6.38072 6.67401 6.86580 7.39202 8.90378 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.012865 B = 0.005309 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.975121 B = 5273.228213 C = 6989.531254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.626 4.626 2 S 2.410 3.590 3 O -0.999 6.999 4 O -0.989 6.989 5 C -0.592 4.592 6 C -0.113 4.113 7 C 0.065 3.935 8 N -0.545 5.545 9 C 0.205 3.795 10 C -0.523 4.523 11 H 0.062 0.938 12 C 0.001 3.999 13 N -0.935 5.935 14 Si 0.967 3.033 15 H -0.275 1.275 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.096 3.904 19 C -0.156 4.156 20 C -0.166 4.166 21 C -0.177 4.177 22 H 0.154 0.846 23 H 0.137 0.863 24 H 0.160 0.840 25 H 0.171 0.829 26 H 0.156 0.844 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.099 0.901 31 H 0.006 0.994 32 H -0.039 1.039 33 H 0.264 0.736 34 H 0.058 0.942 35 H 0.024 0.976 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.951 -10.323 -1.689 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.779 4.779 2 S 2.599 3.401 3 O -0.996 6.996 4 O -0.987 6.987 5 C -0.722 4.722 6 C -0.152 4.152 7 C -0.064 4.064 8 N -0.269 5.269 9 C 0.079 3.921 10 C -0.561 4.561 11 H 0.080 0.920 12 C -0.197 4.197 13 N -0.576 5.576 14 Si 0.792 3.208 15 H -0.201 1.201 16 H -0.206 1.206 17 H -0.187 1.187 18 C -0.032 4.032 19 C -0.175 4.175 20 C -0.203 4.203 21 C -0.214 4.214 22 H 0.173 0.827 23 H 0.155 0.845 24 H 0.178 0.822 25 H 0.189 0.811 26 H 0.174 0.826 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.043 0.957 30 H 0.117 0.883 31 H 0.024 0.976 32 H -0.021 1.021 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.120 -10.014 -2.770 20.026 hybrid contribution 0.505 0.724 1.273 1.549 sum -16.615 -9.290 -1.497 19.094 Atomic orbital electron populations 1.30008 1.20177 1.14293 1.13437 1.07711 0.80651 0.74103 0.77601 1.93545 1.81539 1.37261 1.87284 1.93528 1.81431 1.67504 1.56208 1.30170 1.03287 1.16385 1.22378 1.21241 0.92682 1.01410 0.99861 1.22070 0.88653 1.00668 0.94996 1.61946 1.08011 1.10480 1.46495 1.19422 0.93724 0.86619 0.92377 1.21485 0.91989 0.95988 1.46639 0.91965 1.25911 1.04175 0.94731 0.94886 1.70090 1.36888 1.01316 1.49263 0.85415 0.78989 0.78350 0.78074 1.20117 1.20639 1.18685 1.21498 1.00145 0.90298 0.91267 1.22207 1.05593 0.91069 0.98594 1.23112 0.91387 1.03034 1.02796 1.23000 0.98603 0.98669 1.01136 0.82735 0.84459 0.82157 0.81111 0.82612 0.93572 0.90751 0.95745 0.88319 0.97572 1.02097 0.92728 0.92386 0.95736 0.88121 0.88795 0.87154 0.87568 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -4.73 10.62 113.37 1.20 -3.52 16 2 S 2.41 50.59 5.36 -56.49 -0.30 50.28 16 3 O -1.00 -32.41 18.10 -127.37 -2.31 -34.71 16 4 O -0.99 -29.25 18.10 -127.37 -2.30 -31.56 16 5 C -0.59 -10.83 5.81 71.98 0.42 -10.41 16 6 C -0.11 -3.66 5.25 30.59 0.16 -3.50 16 7 C 0.07 2.21 4.81 86.30 0.42 2.62 16 8 N -0.55 -23.62 4.36 -900.79 -3.93 -27.55 16 9 C 0.20 11.19 4.55 85.56 0.39 11.58 16 10 C -0.52 -30.47 8.23 25.60 0.21 -30.26 16 11 H 0.06 3.57 7.31 -2.91 -0.02 3.55 16 12 C 0.00 0.05 5.46 84.65 0.46 0.51 16 13 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 14 Si 0.97 45.66 29.54 68.60 2.03 47.69 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 18 C 0.10 3.69 5.07 86.30 0.44 4.13 16 19 C -0.16 -4.66 5.15 -10.79 -0.06 -4.72 16 20 C -0.17 -3.66 10.09 30.60 0.31 -3.35 16 21 C -0.18 -4.27 10.25 30.60 0.31 -3.95 16 22 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 23 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.16 0.28 8.14 -2.39 -0.02 0.26 16 25 H 0.17 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.16 2.03 8.14 -2.39 -0.02 2.02 16 27 H 0.05 1.81 6.96 -2.39 -0.02 1.80 16 28 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.02 0.84 8.00 -2.39 -0.02 0.82 16 30 H 0.10 2.66 7.22 -2.39 -0.02 2.64 16 31 H 0.01 0.37 6.72 -2.38 -0.02 0.35 16 32 H -0.04 -2.28 8.12 -2.38 -0.02 -2.30 16 33 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 34 H 0.06 2.58 6.58 -2.39 -0.02 2.56 16 35 H 0.02 0.90 7.73 -2.39 -0.02 0.88 16 36 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.09 1.98 8.03 -2.39 -0.02 1.96 16 38 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -84.25 341.74 -1.27 -85.52 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 0.99 Total: 8.86 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 4.26 Total: -40.87 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -3.64 Total: -85.21 kcal Atomic # 8 Polarization: -61.66 SS G_CDS: -4.61 Total: -66.27 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 16 Polarization: 50.59 SS G_CDS: -0.30 Total: 50.28 kcal Total: -84.25 -1.27 -85.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514665.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.383 kcal (2) G-P(sol) polarization free energy of solvation -84.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds