Wall clock time and date at job start Mon Mar 30 2020 02:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00104 * 2 1 4 4 H 1.48498 * 109.47345 * 270.00706 * 3 2 1 5 5 H 1.48500 * 109.46954 * 30.00353 * 3 2 1 6 6 H 1.48496 * 109.47083 * 150.00584 * 3 2 1 7 7 C 1.37876 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00403 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00173 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47622 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00337 * 190.00178 * 10 9 7 12 12 C 1.53002 * 109.47374 * 75.73579 * 11 10 9 13 13 N 1.46494 * 109.47609 * 174.88569 * 12 11 10 14 14 C 1.34942 * 126.04264 * 124.99644 * 13 12 11 15 15 C 1.35318 * 107.74926 * 179.73668 * 14 13 12 16 16 C 1.39864 * 107.91915 * 0.02562 * 15 14 13 17 17 N 1.30841 * 108.20373 * 359.97438 * 16 15 14 18 18 C 1.46899 * 111.00199 * 66.04390 * 10 9 7 19 19 C 1.50697 * 109.47381 * 199.61396 * 18 10 9 20 20 C 1.34519 * 125.78895 * 84.85503 * 19 18 10 21 21 C 1.41385 * 106.84113 * 180.02562 * 20 19 18 22 22 C 1.34512 * 106.83931 * 359.97438 * 21 20 19 23 23 O 1.34301 * 108.42325 * 359.74525 * 22 21 20 24 24 H 0.97000 * 119.99869 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47101 * 60.00435 * 9 7 2 26 26 H 1.09009 * 109.47085 * 300.00875 * 9 7 2 27 27 H 1.09003 * 109.47186 * 315.73443 * 11 10 9 28 28 H 1.08998 * 109.47054 * 195.73473 * 11 10 9 29 29 H 1.09002 * 109.46844 * 54.87829 * 12 11 10 30 30 H 1.09006 * 109.46944 * 294.88540 * 12 11 10 31 31 H 1.08008 * 126.12563 * 359.76079 * 14 13 12 32 32 H 1.08001 * 126.03694 * 180.02562 * 15 14 13 33 33 H 1.07998 * 125.89862 * 179.97438 * 16 15 14 34 34 H 1.09000 * 109.47501 * 319.61865 * 18 10 9 35 35 H 1.09005 * 109.47181 * 79.61531 * 18 10 9 36 36 H 1.07999 * 126.58112 * 359.95907 * 20 19 18 37 37 H 1.07999 * 126.57486 * 179.97438 * 21 20 19 38 38 H 1.08008 * 125.78781 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5212 -4.8935 -0.2387 12 6 1.1572 -5.0087 -1.7203 13 7 0.5853 -6.3319 -1.9813 14 6 -0.6127 -6.5810 -2.5502 15 6 -0.7660 -7.9237 -2.6180 16 6 0.3772 -8.5155 -2.0713 17 7 1.1881 -7.5623 -1.6895 18 6 2.9710 -3.6540 1.2527 19 6 4.2279 -4.4602 1.0494 20 6 5.3889 -3.9955 0.5538 21 6 6.2916 -5.0835 0.5366 22 6 5.6284 -6.1478 1.0232 23 8 4.3807 -5.7630 1.3377 24 1 -0.4850 0.8401 0.0004 25 1 0.6242 -2.5568 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 0.6134 -4.9371 0.3630 28 1 2.1806 -5.7160 0.0384 29 1 2.0533 -4.8742 -2.3261 30 1 0.4272 -4.2406 -1.9759 31 1 -1.3221 -5.8411 -2.8908 32 1 -1.6203 -8.4461 -3.0228 33 1 0.5593 -9.5761 -1.9801 34 1 3.2345 -2.6387 1.5488 35 1 2.3663 -4.1148 2.0339 36 1 5.5922 -2.9854 0.2301 37 1 7.3169 -5.0638 0.1978 38 1 6.0321 -7.1423 1.1443 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081517341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:42 Heat of formation + Delta-G solvation = 102.643326 kcal Electronic energy + Delta-G solvation = -20864.359753 eV Core-core repulsion = 17710.796590 eV Total energy + Delta-G solvation = -3153.563163 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.12528 -40.89440 -37.18995 -33.45417 -32.70610 -32.43413 -30.30222 -29.85870 -28.31842 -26.69300 -24.62427 -23.07918 -21.32884 -21.00120 -20.87299 -20.12080 -19.68008 -17.19165 -16.80503 -16.54077 -15.73623 -15.26484 -14.68789 -14.58730 -14.28769 -14.06663 -13.78861 -13.16441 -13.09946 -12.65294 -12.49830 -12.40267 -12.29189 -12.00179 -11.75824 -11.37852 -11.13909 -11.02379 -10.73309 -10.65042 -10.34593 -9.97977 -9.50604 -9.38535 -9.22385 -8.56838 -8.41469 -8.05766 -7.53220 -6.15408 -4.17888 2.10132 2.14575 2.74415 3.01094 3.04345 3.25629 3.32533 3.35342 3.41280 4.33033 4.65059 4.96414 5.05033 5.14772 5.20638 5.30926 5.40151 5.43699 5.46700 5.64115 5.76586 5.86591 5.89000 6.10845 6.16967 6.18803 6.25582 6.27698 6.39555 6.54209 6.81279 6.91612 6.98434 7.14359 7.24535 7.56385 7.65584 7.82730 7.91589 7.98860 8.33155 8.89530 9.47626 10.95187 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.011865 B = 0.006122 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.375355 B = 4572.846692 C = 6629.379004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.191 3.809 10 N -0.530 5.530 11 C 0.046 3.954 12 C 0.138 3.862 13 N -0.360 5.360 14 C 0.055 3.945 15 C -0.285 4.285 16 C 0.033 3.967 17 N -0.294 5.294 18 C 0.141 3.859 19 C 0.010 3.990 20 C -0.199 4.199 21 C -0.215 4.215 22 C -0.056 4.056 23 O -0.181 6.181 24 H 0.263 0.737 25 H 0.035 0.965 26 H -0.004 1.004 27 H 0.033 0.967 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.172 0.828 32 H 0.143 0.857 33 H 0.178 0.822 34 H 0.120 0.880 35 H 0.039 0.961 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.294 -12.365 -1.661 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.067 3.933 10 N -0.255 5.255 11 C -0.083 4.083 12 C 0.017 3.983 13 N -0.143 5.143 14 C -0.092 4.092 15 C -0.315 4.315 16 C -0.152 4.152 17 N -0.116 5.116 18 C 0.013 3.987 19 C -0.041 4.041 20 C -0.219 4.219 21 C -0.234 4.234 22 C -0.124 4.124 23 O -0.077 6.077 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.014 0.986 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.189 0.811 32 H 0.160 0.840 33 H 0.195 0.805 34 H 0.138 0.862 35 H 0.057 0.943 36 H 0.165 0.835 37 H 0.159 0.841 38 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 4.411 -11.893 -1.350 12.757 hybrid contribution -0.800 0.653 0.024 1.033 sum 3.611 -11.240 -1.326 11.880 Atomic orbital electron populations 1.69943 1.06101 1.27041 1.50434 1.24972 0.94847 0.99374 0.95111 0.86494 0.79756 0.82951 0.78229 1.20565 1.21281 1.19726 1.21129 0.93606 0.89689 1.50842 0.91576 1.19853 0.89865 0.87049 0.96546 1.61924 1.27867 1.02664 1.33031 1.22231 0.98030 0.94175 0.93888 1.21805 1.00384 0.77565 0.98564 1.48892 1.13562 1.06266 1.45533 1.22635 0.89609 0.98005 0.98945 1.21435 1.02395 0.92964 1.14703 1.23818 0.93090 0.99146 0.99179 1.77367 1.22111 0.88923 1.23169 1.20505 0.88211 0.98580 0.91393 1.22758 0.98191 0.81123 1.02019 1.21548 0.93091 1.00807 1.06484 1.21782 1.01117 0.93432 1.07102 1.23831 0.83105 1.00100 1.05339 1.84022 1.31272 1.26097 1.66285 0.92753 0.94709 0.98613 0.94917 0.90375 0.88971 0.88087 0.81072 0.83952 0.80530 0.86177 0.94252 0.83530 0.84102 0.78910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.16 13.29 55.43 0.74 -24.42 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.51 -13.36 8.23 -34.44 -0.28 -13.64 16 8 H 0.07 1.70 7.31 -52.49 -0.38 1.31 16 9 C 0.19 4.56 4.55 -4.98 -0.02 4.54 16 10 N -0.53 -10.80 4.35 -237.52 -1.03 -11.83 16 11 C 0.05 0.85 5.01 -3.82 -0.02 0.83 16 12 C 0.14 2.31 6.54 -4.04 -0.03 2.29 16 13 N -0.36 -5.80 3.68 -61.36 -0.23 -6.03 16 14 C 0.06 0.75 11.45 -17.22 -0.20 0.56 16 15 C -0.29 -3.59 10.80 -40.01 -0.43 -4.02 16 16 C 0.03 0.45 12.03 -17.37 -0.21 0.24 16 17 N -0.29 -4.91 12.35 30.62 0.38 -4.54 16 18 C 0.14 2.70 5.33 -4.98 -0.03 2.67 16 19 C 0.01 0.17 6.15 -35.62 -0.22 -0.04 16 20 C -0.20 -3.41 10.81 -39.70 -0.43 -3.84 16 21 C -0.22 -3.16 10.91 -39.70 -0.43 -3.60 16 22 C -0.06 -0.80 12.09 29.42 0.36 -0.44 16 23 O -0.18 -3.13 10.19 5.71 0.06 -3.07 16 24 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 25 H 0.03 0.87 6.72 -51.93 -0.35 0.52 16 26 H 0.00 -0.10 8.12 -51.92 -0.42 -0.52 16 27 H 0.03 0.62 8.00 -51.93 -0.42 0.21 16 28 H 0.08 1.51 6.83 -51.93 -0.35 1.15 16 29 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 30 H 0.10 1.64 6.88 -51.93 -0.36 1.29 16 31 H 0.17 1.82 8.06 -52.48 -0.42 1.40 16 32 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.18 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.12 2.41 6.58 -51.93 -0.34 2.06 16 35 H 0.04 0.73 8.00 -51.93 -0.42 0.32 16 36 H 0.15 2.45 8.06 -52.49 -0.42 2.03 16 37 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.19 1.95 8.06 -52.48 -0.42 1.52 16 LS Contribution 327.31 15.07 4.93 4.93 Total: -1.00 -30.18 327.31 -7.35 -37.53 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.13 Total: 4.81 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -2.04 Total: -12.98 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.14 Total: -46.82 kcal Atomic # 8 Polarization: -3.13 SS G_CDS: 0.06 Total: -3.07 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.18 -7.35 -37.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081517341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.174 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds