Wall clock time and date at job start Mon Mar 30 2020 02:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00104 * 2 1 4 4 H 1.48498 * 109.47345 * 270.00706 * 3 2 1 5 5 H 1.48500 * 109.46954 * 30.00353 * 3 2 1 6 6 H 1.48496 * 109.47083 * 150.00584 * 3 2 1 7 7 C 1.37876 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00403 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00173 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47622 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00337 * 190.00178 * 10 9 7 12 12 C 1.53002 * 109.47374 * 75.73579 * 11 10 9 13 13 N 1.46494 * 109.47609 * 174.88569 * 12 11 10 14 14 C 1.34942 * 126.04264 * 124.99644 * 13 12 11 15 15 C 1.35318 * 107.74926 * 179.73668 * 14 13 12 16 16 C 1.39864 * 107.91915 * 0.02562 * 15 14 13 17 17 N 1.30841 * 108.20373 * 359.97438 * 16 15 14 18 18 C 1.46899 * 111.00199 * 66.04390 * 10 9 7 19 19 C 1.50697 * 109.47381 * 199.61396 * 18 10 9 20 20 C 1.34519 * 125.78895 * 84.85503 * 19 18 10 21 21 C 1.41385 * 106.84113 * 180.02562 * 20 19 18 22 22 C 1.34512 * 106.83931 * 359.97438 * 21 20 19 23 23 O 1.34301 * 108.42325 * 359.74525 * 22 21 20 24 24 H 0.97000 * 119.99869 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47101 * 60.00435 * 9 7 2 26 26 H 1.09009 * 109.47085 * 300.00875 * 9 7 2 27 27 H 1.09003 * 109.47186 * 315.73443 * 11 10 9 28 28 H 1.08998 * 109.47054 * 195.73473 * 11 10 9 29 29 H 1.09002 * 109.46844 * 54.87829 * 12 11 10 30 30 H 1.09006 * 109.46944 * 294.88540 * 12 11 10 31 31 H 1.08008 * 126.12563 * 359.76079 * 14 13 12 32 32 H 1.08001 * 126.03694 * 180.02562 * 15 14 13 33 33 H 1.07998 * 125.89862 * 179.97438 * 16 15 14 34 34 H 1.09000 * 109.47501 * 319.61865 * 18 10 9 35 35 H 1.09005 * 109.47181 * 79.61531 * 18 10 9 36 36 H 1.07999 * 126.58112 * 359.95907 * 20 19 18 37 37 H 1.07999 * 126.57486 * 179.97438 * 21 20 19 38 38 H 1.08008 * 125.78781 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5212 -4.8935 -0.2387 12 6 1.1572 -5.0087 -1.7203 13 7 0.5853 -6.3319 -1.9813 14 6 -0.6127 -6.5810 -2.5502 15 6 -0.7660 -7.9237 -2.6180 16 6 0.3772 -8.5155 -2.0713 17 7 1.1881 -7.5623 -1.6895 18 6 2.9710 -3.6540 1.2527 19 6 4.2279 -4.4602 1.0494 20 6 5.3889 -3.9955 0.5538 21 6 6.2916 -5.0835 0.5366 22 6 5.6284 -6.1478 1.0232 23 8 4.3807 -5.7630 1.3377 24 1 -0.4850 0.8401 0.0004 25 1 0.6242 -2.5568 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 0.6134 -4.9371 0.3630 28 1 2.1806 -5.7160 0.0384 29 1 2.0533 -4.8742 -2.3261 30 1 0.4272 -4.2406 -1.9759 31 1 -1.3221 -5.8411 -2.8908 32 1 -1.6203 -8.4461 -3.0228 33 1 0.5593 -9.5761 -1.9801 34 1 3.2345 -2.6387 1.5488 35 1 2.3663 -4.1148 2.0339 36 1 5.5922 -2.9854 0.2301 37 1 7.3169 -5.0638 0.1978 38 1 6.0321 -7.1423 1.1443 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081517341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:42 Heat of formation + Delta-G solvation = 84.189633 kcal Electronic energy + Delta-G solvation = -20865.159965 eV Core-core repulsion = 17710.796590 eV Total energy + Delta-G solvation = -3154.363376 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.39896 -41.99386 -38.82116 -35.01265 -34.39237 -33.76357 -31.63085 -31.05220 -29.87515 -28.27146 -26.14148 -24.74222 -22.68072 -22.40096 -21.94173 -21.34393 -21.10667 -18.63632 -18.34109 -17.97397 -17.22527 -16.70913 -16.27967 -15.95300 -15.76831 -15.38977 -15.22105 -14.56444 -14.41997 -14.06368 -13.80433 -13.65308 -13.55720 -13.52402 -13.28905 -13.05505 -12.73277 -12.64906 -12.49749 -12.26485 -11.91802 -11.48014 -11.33573 -10.76172 -10.60849 -10.40219 -9.50927 -9.37284 -9.21040 -8.20772 -6.29722 0.85087 1.03081 1.44020 1.44747 1.54845 1.57551 1.80006 2.00654 2.16007 2.41364 3.12839 3.23388 3.59894 3.83149 3.97134 4.07286 4.15608 4.18816 4.24138 4.30314 4.46397 4.48432 4.66060 4.74622 4.85555 4.92283 4.97063 5.09275 5.14171 5.17240 5.18702 5.28665 5.62780 5.70532 5.80960 5.96340 6.11623 6.14007 6.30232 6.46467 6.83029 6.84403 7.39931 8.90161 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.011865 B = 0.006122 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.375355 B = 4572.846692 C = 6629.379004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.066 0.934 9 C 0.207 3.793 10 N -0.530 5.530 11 C 0.059 3.941 12 C 0.150 3.850 13 N -0.379 5.379 14 C 0.044 3.956 15 C -0.280 4.280 16 C 0.036 3.964 17 N -0.339 5.339 18 C 0.145 3.855 19 C -0.017 4.017 20 C -0.205 4.205 21 C -0.222 4.222 22 C -0.045 4.045 23 O -0.196 6.196 24 H 0.265 0.735 25 H 0.022 0.978 26 H -0.031 1.031 27 H 0.022 0.978 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.196 0.804 32 H 0.174 0.826 33 H 0.210 0.790 34 H 0.106 0.894 35 H 0.038 0.962 36 H 0.144 0.856 37 H 0.171 0.829 38 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.292 -13.607 -2.309 14.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.189 4.189 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.084 0.916 9 C 0.082 3.918 10 N -0.255 5.255 11 C -0.071 4.071 12 C 0.028 3.972 13 N -0.162 5.162 14 C -0.102 4.102 15 C -0.309 4.309 16 C -0.149 4.149 17 N -0.161 5.161 18 C 0.017 3.983 19 C -0.067 4.067 20 C -0.225 4.225 21 C -0.241 4.241 22 C -0.112 4.112 23 O -0.093 6.093 24 H 0.073 0.927 25 H 0.040 0.960 26 H -0.014 1.014 27 H 0.040 0.960 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.213 0.787 32 H 0.192 0.808 33 H 0.227 0.773 34 H 0.124 0.876 35 H 0.056 0.944 36 H 0.162 0.838 37 H 0.188 0.812 38 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 5.418 -13.155 -2.002 14.367 hybrid contribution -1.103 0.879 0.221 1.427 sum 4.315 -12.277 -1.781 13.134 Atomic orbital electron populations 1.70056 1.07564 1.27920 1.51512 1.25776 0.95603 1.02766 0.94741 0.85476 0.78670 0.78713 0.78352 1.20037 1.21075 1.18880 1.21406 0.93738 0.90680 1.50317 0.91595 1.19516 0.89791 0.87942 0.94562 1.61892 1.27047 1.02627 1.33886 1.22112 0.97038 0.92764 0.95149 1.21509 1.00157 0.78670 0.96857 1.48821 1.14600 1.05704 1.47086 1.23234 0.89115 0.99425 0.98399 1.21855 1.02874 0.92543 1.13648 1.24482 0.92723 1.00215 0.97502 1.77323 1.23918 0.89635 1.25229 1.20330 0.88904 0.98309 0.90734 1.22400 0.97917 0.81866 1.04476 1.21759 0.93491 1.01521 1.05745 1.22113 1.02241 0.92456 1.07286 1.24754 0.81625 1.01742 1.03041 1.84005 1.33012 1.25567 1.66734 0.92655 0.95975 1.01357 0.95989 0.90971 0.89815 0.88021 0.78746 0.80844 0.77327 0.87586 0.94400 0.83791 0.81151 0.74615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.22 13.29 21.45 0.28 -52.93 16 2 C 0.01 0.54 5.46 84.65 0.46 1.00 16 3 Si 0.96 42.48 29.54 68.60 2.03 44.50 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.52 -27.81 8.23 25.60 0.21 -27.60 16 8 H 0.07 3.44 7.31 -2.91 -0.02 3.42 16 9 C 0.21 10.31 4.55 85.56 0.39 10.70 16 10 N -0.53 -22.45 4.35 -905.38 -3.93 -26.38 16 11 C 0.06 2.24 5.01 86.30 0.43 2.68 16 12 C 0.15 5.16 6.54 86.38 0.57 5.73 16 13 N -0.38 -12.17 3.68 -348.06 -1.28 -13.45 16 14 C 0.04 1.15 11.45 83.54 0.96 2.10 16 15 C -0.28 -6.36 10.80 21.99 0.24 -6.13 16 16 C 0.04 0.91 12.03 85.23 1.02 1.94 16 17 N -0.34 -11.13 12.35 -57.03 -0.70 -11.84 16 18 C 0.14 5.78 5.33 85.56 0.46 6.23 16 19 C -0.02 -0.60 6.15 24.83 0.15 -0.45 16 20 C -0.21 -6.92 10.81 22.19 0.24 -6.68 16 21 C -0.22 -6.03 10.91 22.19 0.24 -5.79 16 22 C -0.04 -1.17 12.09 66.97 0.81 -0.36 16 23 O -0.20 -6.67 10.19 -2.49 -0.03 -6.69 16 24 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 25 H 0.02 1.15 6.72 -2.39 -0.02 1.14 16 26 H -0.03 -1.70 8.12 -2.38 -0.02 -1.72 16 27 H 0.02 0.88 8.00 -2.39 -0.02 0.86 16 28 H 0.07 2.86 6.83 -2.39 -0.02 2.85 16 29 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.10 3.43 6.88 -2.38 -0.02 3.41 16 31 H 0.20 3.85 8.06 -2.91 -0.02 3.83 16 32 H 0.17 2.77 8.06 -2.91 -0.02 2.74 16 33 H 0.21 3.57 8.06 -2.91 -0.02 3.55 16 34 H 0.11 4.45 6.58 -2.39 -0.02 4.44 16 35 H 0.04 1.48 8.00 -2.38 -0.02 1.46 16 36 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 37 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.24 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -65.85 327.31 3.59 -62.25 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 1.05 Total: 21.16 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 6.18 Total: -16.63 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -5.63 Total: -104.60 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.03 Total: -6.69 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -65.85 3.59 -62.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081517341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.444 kcal (2) G-P(sol) polarization free energy of solvation -65.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds