Wall clock time and date at job start Mon Mar 30 2020 01:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00126 * 2 1 4 4 H 1.48498 * 109.47308 * 270.00142 * 3 2 1 5 5 H 1.48504 * 109.47361 * 30.00449 * 3 2 1 6 6 H 1.48504 * 109.47193 * 150.00128 * 3 2 1 7 7 C 1.37878 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99707 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00410 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47279 * 179.97438 * 9 7 2 11 11 C 1.46503 * 119.99747 * 95.37675 * 10 9 7 12 12 C 1.50694 * 109.47001 * 269.99635 * 11 10 9 13 13 C 1.38672 * 120.42318 * 269.72010 * 12 11 10 14 14 C 1.38622 * 118.42795 * 180.27840 * 13 12 11 15 15 C 1.38233 * 119.15530 * 0.02562 * 14 13 12 16 16 N 1.31850 * 120.76655 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72439 * 359.97438 * 16 15 14 18 18 C 1.34771 * 119.99961 * 275.37736 * 10 9 7 19 19 O 1.21279 * 119.99798 * 174.23980 * 18 10 9 20 20 C 1.50699 * 120.00291 * 354.23004 * 18 10 9 21 21 N 1.46899 * 115.55435 * 291.81256 * 20 18 10 22 22 C 1.52999 * 117.49816 * 146.10234 * 20 18 10 23 23 C 1.53001 * 60.00051 * 252.51241 * 22 20 18 24 24 H 0.97004 * 119.99416 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46749 * 59.99212 * 9 7 2 26 26 H 1.09002 * 109.46821 * 300.00185 * 9 7 2 27 27 H 1.09006 * 109.46971 * 149.99810 * 11 10 9 28 28 H 1.08996 * 109.47241 * 30.00146 * 11 10 9 29 29 H 1.08005 * 120.78390 * 0.28039 * 13 12 11 30 30 H 1.07993 * 120.42547 * 179.97438 * 14 13 12 31 31 H 1.08003 * 119.61581 * 179.97438 * 15 14 13 32 32 H 1.07996 * 119.61478 * 179.97438 * 17 16 15 33 33 H 1.00902 * 110.99735 * 307.08215 * 21 20 18 34 34 H 1.00900 * 110.99569 * 71.02484 * 21 20 18 35 35 H 1.09001 * 117.49808 * 0.02562 * 22 20 18 36 36 H 1.08993 * 117.49916 * 145.02575 * 22 20 18 37 37 H 1.08994 * 117.50328 * 252.50809 * 23 22 20 38 38 H 1.09006 * 117.51886 * 107.47846 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.5886 -4.2467 1.2637 12 6 3.7960 -3.5449 1.8299 13 6 5.0741 -3.9723 1.5031 14 6 6.1552 -3.3004 2.0521 15 6 5.9248 -2.2344 2.9015 16 7 4.6954 -1.8555 3.1902 17 6 3.6435 -2.4707 2.6856 18 6 2.7240 -4.0538 -1.1615 19 8 3.5891 -4.9037 -1.1542 20 6 2.2316 -3.4911 -2.4699 21 7 0.8506 -3.8394 -2.8298 22 6 3.2459 -3.3563 -3.6073 23 6 2.7412 -2.1081 -2.8805 24 1 -0.4849 0.8401 0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8279 -5.2951 1.0858 28 1 1.7629 -4.1776 1.9718 29 1 5.2236 -4.8089 0.8366 30 1 7.1645 -3.6062 1.8198 31 1 6.7616 -1.7059 3.3337 32 1 2.6515 -2.1319 2.9454 33 1 0.7088 -4.8378 -2.7952 34 1 0.1904 -3.3597 -2.2363 35 1 4.2693 -3.6750 -3.4094 36 1 2.8887 -3.5262 -4.6230 37 1 2.0520 -1.4569 -3.4180 38 1 3.4324 -1.6052 -2.2041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088129709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:02 Heat of formation + Delta-G solvation = 32.387473 kcal Electronic energy + Delta-G solvation = -22062.713248 eV Core-core repulsion = 18906.103562 eV Total energy + Delta-G solvation = -3156.609686 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.05571 -39.24728 -36.25719 -35.29987 -32.93835 -32.02837 -31.22444 -30.63538 -27.64960 -26.22506 -23.43812 -23.10687 -22.42701 -21.83896 -21.04677 -18.22999 -16.82691 -16.68176 -16.53947 -15.76480 -15.72420 -15.18311 -14.94220 -14.66774 -14.28248 -13.71266 -13.53436 -13.08918 -12.79037 -12.58759 -12.45766 -12.26284 -11.85360 -11.57294 -11.34945 -11.01638 -10.88245 -10.76748 -10.37519 -10.16590 -9.95001 -9.80048 -9.43739 -9.38861 -9.07009 -8.67264 -8.61564 -8.16961 -7.87373 -6.21393 -4.25882 1.48681 1.71040 3.14748 3.22773 3.30672 3.37070 3.67770 4.27968 4.33102 4.43393 4.72953 4.84709 5.06669 5.14363 5.22656 5.28204 5.37785 5.48001 5.49292 5.66541 5.76421 5.96087 6.01681 6.07099 6.15356 6.21305 6.49757 6.54990 6.61073 6.72300 6.75187 6.98784 7.11785 7.35224 7.47471 7.72597 7.75336 8.00605 8.14726 8.39482 8.72146 8.86825 9.40976 10.85698 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.011912 B = 0.010155 C = 0.006722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.061598 B = 2756.541571 C = 4164.408184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.071 3.929 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.237 3.763 10 N -0.588 5.588 11 C 0.162 3.838 12 C -0.142 4.142 13 C -0.057 4.057 14 C -0.187 4.187 15 C 0.090 3.910 16 N -0.490 5.490 17 C 0.137 3.863 18 C 0.528 3.472 19 O -0.567 6.567 20 C 0.025 3.975 21 N -0.798 5.798 22 C -0.151 4.151 23 C -0.117 4.117 24 H 0.265 0.735 25 H 0.040 0.960 26 H 0.035 0.965 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.147 0.853 32 H 0.156 0.844 33 H 0.338 0.662 34 H 0.354 0.646 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.847 -6.576 0.670 8.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.132 4.132 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.117 3.883 10 N -0.318 5.318 11 C 0.038 3.962 12 C -0.145 4.145 13 C -0.083 4.083 14 C -0.207 4.207 15 C -0.067 4.067 16 N -0.199 5.199 17 C -0.021 4.021 18 C 0.313 3.687 19 O -0.447 6.447 20 C -0.072 4.072 21 N -0.332 5.332 22 C -0.189 4.189 23 C -0.155 4.155 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.152 0.848 30 H 0.144 0.856 31 H 0.164 0.836 32 H 0.174 0.826 33 H 0.150 0.850 34 H 0.173 0.827 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.112 -5.842 0.561 7.783 hybrid contribution 0.438 0.090 0.418 0.612 sum 5.550 -5.752 0.978 8.052 Atomic orbital electron populations 1.69893 1.05870 1.27260 1.49752 1.24819 0.94720 0.98934 0.94729 0.86645 0.80191 0.83417 0.78290 1.20479 1.21106 1.19737 1.21275 0.93173 0.89971 1.51697 0.92446 1.19576 0.87374 0.82870 0.98458 1.48369 1.44752 1.34756 1.03957 1.20163 0.93896 0.95949 0.86192 1.21206 0.95979 0.98666 0.98664 1.21578 0.91952 0.98738 0.96069 1.22028 0.99669 0.98617 1.00354 1.22650 0.94610 0.94219 0.95215 1.67693 0.99262 1.28743 1.24186 1.22688 0.97736 0.90001 0.91639 1.20473 0.81384 0.81342 0.85487 1.90558 1.31937 1.34223 1.87943 1.20951 0.90488 1.03983 0.91764 1.58731 1.01537 1.12799 1.60107 1.23077 0.97527 1.02370 0.95952 1.22981 1.02081 0.89246 1.01163 0.92562 0.94236 0.94662 0.90250 0.89791 0.84822 0.85568 0.83590 0.82637 0.84998 0.82731 0.88881 0.88331 0.87998 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.26 13.29 55.43 0.74 -22.52 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 3 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -12.57 7.48 -34.44 -0.26 -12.83 16 8 H 0.06 1.48 7.53 -52.48 -0.40 1.09 16 9 C 0.24 5.11 4.95 -5.20 -0.03 5.08 16 10 N -0.59 -11.37 2.45 -176.44 -0.43 -11.81 16 11 C 0.16 2.77 5.56 -5.20 -0.03 2.74 16 12 C -0.14 -2.51 5.48 -104.49 -0.57 -3.08 16 13 C -0.06 -0.95 9.72 -39.28 -0.38 -1.34 16 14 C -0.19 -2.82 10.11 -39.44 -0.40 -3.21 16 15 C 0.09 1.43 11.18 -17.55 -0.20 1.24 16 16 N -0.49 -9.14 10.36 -13.25 -0.14 -9.28 16 17 C 0.14 2.53 10.83 -17.55 -0.19 2.34 16 18 C 0.53 10.47 7.09 -10.99 -0.08 10.40 16 19 O -0.57 -12.08 15.69 5.56 0.09 -11.99 16 20 C 0.02 0.45 1.79 -132.75 -0.24 0.21 16 21 N -0.80 -13.19 9.68 -0.19 0.00 -13.20 16 22 C -0.15 -2.54 9.99 -26.73 -0.27 -2.81 16 23 C -0.12 -2.19 8.84 -26.73 -0.24 -2.43 16 24 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 25 H 0.04 0.88 4.69 -51.93 -0.24 0.63 16 26 H 0.04 0.80 7.83 -51.93 -0.41 0.39 16 27 H 0.08 1.30 7.46 -51.93 -0.39 0.91 16 28 H 0.08 1.29 7.81 -51.93 -0.41 0.88 16 29 H 0.13 2.23 7.47 -52.48 -0.39 1.84 16 30 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.15 1.85 8.06 -52.48 -0.42 1.43 16 32 H 0.16 2.87 8.06 -52.49 -0.42 2.45 16 33 H 0.34 5.01 9.07 -39.29 -0.36 4.66 16 34 H 0.35 6.14 6.59 -39.29 -0.26 5.88 16 35 H 0.09 1.58 8.04 -51.93 -0.42 1.16 16 36 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.10 1.91 8.14 -51.93 -0.42 1.48 16 38 H 0.10 2.10 7.20 -51.93 -0.37 1.72 16 LS Contribution 323.28 15.07 4.87 4.87 Total: -1.00 -27.90 323.28 -7.75 -35.65 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -4.89 Total: 14.73 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -2.97 Total: -1.98 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.16 Total: -56.80 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.90 -7.75 -35.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088129709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.039 kcal (2) G-P(sol) polarization free energy of solvation -27.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds