Wall clock time and date at job start Mon Mar 30 2020 01:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00126 * 2 1 4 4 H 1.48498 * 109.47308 * 270.00142 * 3 2 1 5 5 H 1.48504 * 109.47361 * 30.00449 * 3 2 1 6 6 H 1.48504 * 109.47193 * 150.00128 * 3 2 1 7 7 C 1.37878 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99707 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00410 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47279 * 179.97438 * 9 7 2 11 11 C 1.46503 * 119.99747 * 95.37675 * 10 9 7 12 12 C 1.50694 * 109.47001 * 269.99635 * 11 10 9 13 13 C 1.38672 * 120.42318 * 269.72010 * 12 11 10 14 14 C 1.38622 * 118.42795 * 180.27840 * 13 12 11 15 15 C 1.38233 * 119.15530 * 0.02562 * 14 13 12 16 16 N 1.31850 * 120.76655 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72439 * 359.97438 * 16 15 14 18 18 C 1.34771 * 119.99961 * 275.37736 * 10 9 7 19 19 O 1.21279 * 119.99798 * 174.23980 * 18 10 9 20 20 C 1.50699 * 120.00291 * 354.23004 * 18 10 9 21 21 N 1.46899 * 115.55435 * 291.81256 * 20 18 10 22 22 C 1.52999 * 117.49816 * 146.10234 * 20 18 10 23 23 C 1.53001 * 60.00051 * 252.51241 * 22 20 18 24 24 H 0.97004 * 119.99416 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46749 * 59.99212 * 9 7 2 26 26 H 1.09002 * 109.46821 * 300.00185 * 9 7 2 27 27 H 1.09006 * 109.46971 * 149.99810 * 11 10 9 28 28 H 1.08996 * 109.47241 * 30.00146 * 11 10 9 29 29 H 1.08005 * 120.78390 * 0.28039 * 13 12 11 30 30 H 1.07993 * 120.42547 * 179.97438 * 14 13 12 31 31 H 1.08003 * 119.61581 * 179.97438 * 15 14 13 32 32 H 1.07996 * 119.61478 * 179.97438 * 17 16 15 33 33 H 1.00902 * 110.99735 * 307.08215 * 21 20 18 34 34 H 1.00900 * 110.99569 * 71.02484 * 21 20 18 35 35 H 1.09001 * 117.49808 * 0.02562 * 22 20 18 36 36 H 1.08993 * 117.49916 * 145.02575 * 22 20 18 37 37 H 1.08994 * 117.50328 * 252.50809 * 23 22 20 38 38 H 1.09006 * 117.51886 * 107.47846 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.5886 -4.2467 1.2637 12 6 3.7960 -3.5449 1.8299 13 6 5.0741 -3.9723 1.5031 14 6 6.1552 -3.3004 2.0521 15 6 5.9248 -2.2344 2.9015 16 7 4.6954 -1.8555 3.1902 17 6 3.6435 -2.4707 2.6856 18 6 2.7240 -4.0538 -1.1615 19 8 3.5891 -4.9037 -1.1542 20 6 2.2316 -3.4911 -2.4699 21 7 0.8506 -3.8394 -2.8298 22 6 3.2459 -3.3563 -3.6073 23 6 2.7412 -2.1081 -2.8805 24 1 -0.4849 0.8401 0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8279 -5.2951 1.0858 28 1 1.7629 -4.1776 1.9718 29 1 5.2236 -4.8089 0.8366 30 1 7.1645 -3.6062 1.8198 31 1 6.7616 -1.7059 3.3337 32 1 2.6515 -2.1319 2.9454 33 1 0.7088 -4.8378 -2.7952 34 1 0.1904 -3.3597 -2.2363 35 1 4.2693 -3.6750 -3.4094 36 1 2.8887 -3.5262 -4.6230 37 1 2.0520 -1.4569 -3.4180 38 1 3.4324 -1.6052 -2.2041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088129709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:02 Heat of formation + Delta-G solvation = 14.896335 kcal Electronic energy + Delta-G solvation = -22063.471721 eV Core-core repulsion = 18906.103562 eV Total energy + Delta-G solvation = -3157.368158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.49771 -40.66598 -37.71050 -36.92200 -34.72380 -33.50826 -32.56376 -32.00843 -29.39331 -27.70392 -25.17655 -24.45039 -23.92806 -23.27977 -22.43225 -19.76104 -18.60752 -18.18131 -17.96797 -17.30168 -17.08836 -16.66700 -16.42164 -16.29063 -15.79944 -15.17196 -14.97888 -14.53889 -14.20544 -14.14701 -13.91680 -13.87340 -13.45693 -13.18749 -12.97376 -12.68239 -12.45313 -12.42872 -12.08597 -11.70901 -11.62217 -11.50080 -10.88579 -10.73411 -10.56352 -10.42652 -10.00323 -9.62733 -9.47490 -8.16687 -6.23117 0.18014 0.38615 1.36011 1.41298 1.47295 1.60016 2.18420 2.42742 2.91380 3.01413 3.16729 3.35047 3.59234 3.60659 3.93206 3.93795 4.05375 4.10669 4.15495 4.32023 4.44182 4.61190 4.65989 4.74103 4.80146 4.87711 4.91054 5.10357 5.20480 5.22276 5.31773 5.39331 5.65910 5.80520 5.82332 6.07650 6.11528 6.40615 6.50907 6.84176 7.07314 7.24053 7.45601 8.89338 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.011912 B = 0.010155 C = 0.006722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.061598 B = 2756.541571 C = 4164.408184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.037 3.963 3 Si 0.929 3.071 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.507 4.507 8 H 0.038 0.962 9 C 0.250 3.750 10 N -0.587 5.587 11 C 0.159 3.841 12 C -0.150 4.150 13 C -0.067 4.067 14 C -0.176 4.176 15 C 0.084 3.916 16 N -0.517 5.517 17 C 0.119 3.881 18 C 0.524 3.476 19 O -0.582 6.582 20 C 0.014 3.986 21 N -0.788 5.788 22 C -0.128 4.128 23 C -0.126 4.126 24 H 0.264 0.736 25 H 0.040 0.960 26 H 0.026 0.974 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.135 0.865 30 H 0.163 0.837 31 H 0.180 0.820 32 H 0.145 0.855 33 H 0.349 0.651 34 H 0.350 0.650 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.939 -7.127 0.128 9.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.164 4.164 3 Si 0.757 3.243 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.130 3.870 10 N -0.316 5.316 11 C 0.036 3.964 12 C -0.153 4.153 13 C -0.093 4.093 14 C -0.195 4.195 15 C -0.072 4.072 16 N -0.226 5.226 17 C -0.038 4.038 18 C 0.310 3.690 19 O -0.462 6.462 20 C -0.083 4.083 21 N -0.323 5.323 22 C -0.166 4.166 23 C -0.164 4.164 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.152 0.848 30 H 0.180 0.820 31 H 0.197 0.803 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.111 0.889 36 H 0.139 0.861 37 H 0.118 0.882 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.203 -6.406 0.017 8.917 hybrid contribution 0.189 0.219 0.620 0.684 sum 6.392 -6.186 0.636 8.918 Atomic orbital electron populations 1.69944 1.06486 1.27573 1.51146 1.25244 0.95189 1.00789 0.95148 0.85997 0.78662 0.81484 0.78171 1.19954 1.21040 1.21082 1.21250 0.92145 0.91006 1.50211 0.94342 1.19276 0.87290 0.82619 0.97847 1.48303 1.44290 1.34131 1.04879 1.20324 0.94474 0.96088 0.85562 1.21213 0.96611 0.98681 0.98844 1.21730 0.92185 0.99083 0.96347 1.22401 1.00899 0.97449 0.98795 1.23247 0.94490 0.94488 0.95023 1.67667 1.00320 1.29546 1.25046 1.22596 0.97642 0.90840 0.92745 1.20775 0.81099 0.81131 0.86004 1.90542 1.32535 1.34945 1.88190 1.21048 0.91696 1.03643 0.91867 1.58733 1.00431 1.13634 1.59453 1.23123 0.97134 0.99868 0.96459 1.22824 1.02219 0.89675 1.01662 0.92625 0.94257 0.95623 0.89399 0.88456 0.84755 0.81979 0.80310 0.83725 0.83752 0.83262 0.88873 0.86110 0.88165 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.66 13.29 21.45 0.28 -47.38 16 2 C 0.04 1.86 5.46 84.65 0.46 2.32 16 3 Si 0.93 42.24 29.54 68.60 2.03 44.27 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 7 C -0.51 -24.51 7.48 25.60 0.19 -24.32 16 8 H 0.04 2.00 7.53 -2.91 -0.02 1.98 16 9 C 0.25 10.80 4.95 85.63 0.42 11.22 16 10 N -0.59 -22.44 2.45 -830.52 -2.04 -24.48 16 11 C 0.16 5.36 5.56 85.63 0.48 5.84 16 12 C -0.15 -5.26 5.48 -19.78 -0.11 -5.37 16 13 C -0.07 -2.16 9.72 22.47 0.22 -1.94 16 14 C -0.18 -4.87 10.11 22.36 0.23 -4.65 16 15 C 0.08 2.51 11.18 84.69 0.95 3.46 16 16 N -0.52 -18.97 10.36 -195.84 -2.03 -21.00 16 17 C 0.12 4.42 10.83 84.67 0.92 5.34 16 18 C 0.52 20.31 7.09 87.66 0.62 20.93 16 19 O -0.58 -24.03 15.69 -3.03 -0.05 -24.08 16 20 C 0.01 0.50 1.79 2.78 0.00 0.50 16 21 N -0.79 -24.90 9.68 -154.53 -1.50 -26.39 16 22 C -0.13 -4.05 9.99 30.59 0.31 -3.74 16 23 C -0.13 -4.62 8.84 30.59 0.27 -4.35 16 24 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 25 H 0.04 1.73 4.69 -2.39 -0.01 1.72 16 26 H 0.03 1.17 7.83 -2.39 -0.02 1.15 16 27 H 0.09 2.81 7.46 -2.38 -0.02 2.79 16 28 H 0.10 2.96 7.81 -2.39 -0.02 2.94 16 29 H 0.13 4.30 7.47 -2.91 -0.02 4.28 16 30 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 31 H 0.18 3.98 8.06 -2.91 -0.02 3.96 16 32 H 0.15 5.53 8.06 -2.91 -0.02 5.50 16 33 H 0.35 9.72 9.07 -89.69 -0.81 8.91 16 34 H 0.35 11.77 6.59 -89.69 -0.59 11.17 16 35 H 0.09 2.97 8.04 -2.39 -0.02 2.96 16 36 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 37 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 38 H 0.08 3.29 7.20 -2.38 -0.02 3.27 16 Total: -1.00 -58.04 323.28 1.35 -56.69 By element: Atomic # 1 Polarization: 37.43 SS G_CDS: -0.31 Total: 37.12 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 4.96 Total: 5.25 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -5.28 Total: -119.25 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.05 Total: -24.08 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -58.04 1.35 -56.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088129709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.586 kcal (2) G-P(sol) polarization free energy of solvation -58.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds