Wall clock time and date at job start Mon Mar 30 2020 01:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00531 * 2 1 4 4 H 1.48491 * 109.47228 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46733 * 300.00297 * 3 2 1 6 6 H 1.48497 * 109.46693 * 59.99956 * 3 2 1 7 7 C 1.38818 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00066 * 163.06603 * 7 2 1 9 9 N 1.36932 * 119.99911 * 343.07006 * 7 2 1 10 10 C 1.46926 * 120.63293 * 331.84881 * 9 7 2 11 11 C 1.53195 * 108.77672 * 233.58988 * 10 9 7 12 12 C 1.53033 * 109.30914 * 305.36205 * 11 10 9 13 13 N 1.46501 * 109.46012 * 181.38443 * 12 11 10 14 14 C 1.34776 * 120.00169 * 154.99455 * 13 12 11 15 15 O 1.21514 * 120.00098 * 0.02562 * 14 13 12 16 16 C 1.48178 * 119.99989 * 179.97438 * 14 13 12 17 17 C 1.39306 * 119.72330 * 180.02562 * 16 14 13 18 18 C 1.38586 * 119.05961 * 180.02562 * 17 16 14 19 19 C 1.38621 * 118.48869 * 0.02562 * 18 17 16 20 20 C 1.38565 * 119.35276 * 0.26988 * 19 18 17 21 21 N 1.31526 * 120.89896 * 359.44685 * 20 19 18 22 22 C 1.53042 * 109.54263 * 61.36720 * 12 11 10 23 23 C 1.46933 * 120.63218 * 151.82741 * 9 7 2 24 24 H 0.97000 * 119.99309 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.59214 * 113.79876 * 10 9 7 26 26 H 1.09004 * 109.69889 * 353.44226 * 10 9 7 27 27 H 1.09001 * 109.49617 * 185.41460 * 11 10 9 28 28 H 1.08996 * 109.49454 * 65.31261 * 11 10 9 29 29 H 1.09003 * 109.46453 * 301.35693 * 12 11 10 30 30 H 0.96998 * 120.00102 * 335.00570 * 13 12 11 31 31 H 1.08010 * 120.46801 * 0.02761 * 17 16 14 32 32 H 1.08002 * 120.75480 * 180.02562 * 18 17 16 33 33 H 1.07998 * 120.32635 * 180.02562 * 19 18 17 34 34 H 1.07992 * 119.54714 * 179.73086 * 20 19 18 35 35 H 1.09003 * 109.49721 * 58.57953 * 22 12 11 36 36 H 1.08996 * 109.50109 * 178.68345 * 22 12 11 37 37 H 1.08999 * 109.58699 * 246.20259 * 23 9 7 38 38 H 1.09002 * 109.58347 * 6.48241 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0552 -1.2224 -0.2730 9 7 1.3700 -2.3625 0.3443 10 6 0.2260 -2.3409 1.2660 11 6 0.4974 -3.3209 2.4118 12 6 0.8118 -4.7020 1.8327 13 7 1.0395 -5.6496 2.9265 14 6 0.8359 -6.9674 2.7298 15 8 0.4640 -7.3695 1.6452 16 6 1.0667 -7.9259 3.8360 17 6 0.8550 -9.2867 3.6263 18 6 1.0746 -10.1709 4.6706 19 6 1.4978 -9.6631 5.8890 20 6 1.6823 -8.2968 6.0283 21 7 1.4716 -7.4805 5.0188 22 6 2.0672 -4.6181 0.9614 23 6 1.8137 -3.6528 -0.2008 24 1 -0.4849 0.8401 -0.0004 25 1 -0.6771 -2.6410 0.7347 26 1 0.0968 -1.3358 1.6677 27 1 -0.3832 -3.3862 3.0508 28 1 1.3471 -2.9697 2.9972 29 1 -0.0283 -5.0417 1.2269 30 1 1.3365 -5.3287 3.7923 31 1 0.5245 -9.6475 2.6634 32 1 0.9194 -11.2315 4.5381 33 1 1.6783 -10.3254 6.7228 34 1 2.0077 -7.8974 6.9774 35 1 2.9022 -4.2547 1.5605 36 1 2.3040 -5.6067 0.5682 37 1 1.0400 -4.0599 -0.8518 38 1 2.7331 -3.5126 -0.7693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110823599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:04 Heat of formation + Delta-G solvation = 18.955738 kcal Electronic energy + Delta-G solvation = -20754.690990 eV Core-core repulsion = 17597.498860 eV Total energy + Delta-G solvation = -3157.192130 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.70962 -39.11936 -37.24540 -34.46384 -32.98053 -32.07623 -31.51751 -30.06966 -29.31052 -25.55200 -24.31681 -23.69697 -22.25742 -21.89866 -20.40576 -19.42623 -18.04638 -16.90032 -16.75011 -16.13234 -15.47156 -15.11397 -15.01451 -14.72652 -13.98494 -13.81458 -13.61942 -13.48940 -13.40625 -12.93798 -12.56812 -12.35293 -12.21756 -11.44190 -11.11550 -10.86156 -10.71640 -10.46379 -10.28127 -10.26462 -10.21326 -10.01414 -9.79835 -9.68178 -9.47770 -9.43731 -8.67744 -8.43704 -6.66241 -5.77568 -3.19671 0.44153 0.92918 2.74748 3.23606 3.38773 3.46514 3.48974 3.72948 4.00315 4.49566 4.51451 4.63977 4.69352 4.79120 5.16294 5.35996 5.42879 5.44725 5.53680 5.61092 5.70135 5.80698 5.90721 6.11177 6.28297 6.30221 6.37082 6.56817 6.58284 6.62524 6.82175 6.92349 7.02039 7.34546 7.42874 7.63535 7.79322 7.83261 8.34508 8.46712 9.22833 9.86044 10.43237 11.31400 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042546 B = 0.003485 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.953119 B = 8032.562169 C = 8270.108057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.147 4.147 12 C 0.148 3.852 13 N -0.701 5.701 14 C 0.564 3.436 15 O -0.536 6.536 16 C 0.085 3.915 17 C -0.115 4.115 18 C -0.083 4.083 19 C -0.156 4.156 20 C 0.097 3.903 21 N -0.459 5.459 22 C -0.139 4.139 23 C 0.148 3.852 24 H 0.253 0.747 25 H 0.021 0.979 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.406 0.594 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.162 0.838 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.021 0.979 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.198 -18.224 12.768 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.045 3.955 13 N -0.350 5.350 14 C 0.348 3.652 15 O -0.413 6.413 16 C -0.054 4.054 17 C -0.135 4.135 18 C -0.109 4.109 19 C -0.176 4.176 20 C -0.063 4.063 21 N -0.171 5.171 22 C -0.179 4.179 23 C 0.021 3.979 24 H 0.063 0.937 25 H 0.039 0.961 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.242 0.758 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.179 0.821 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.039 0.961 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.952 -17.409 12.026 21.248 hybrid contribution 0.438 -0.003 0.472 0.644 sum 2.390 -17.411 12.498 21.566 Atomic orbital electron populations 1.70038 1.05247 1.25386 1.54089 1.25061 0.95302 0.98427 1.00935 0.86223 0.79368 0.83940 0.77247 1.20266 1.21752 1.21574 1.19240 0.92607 0.84738 1.41477 0.91596 1.44106 1.35831 1.01682 1.49970 1.20741 0.88881 0.97901 0.87646 1.22540 1.00699 0.94554 1.00846 1.21138 0.98655 0.88296 0.87377 1.46221 1.66461 1.05890 1.16396 1.17901 0.78208 0.82671 0.86437 1.90784 1.47079 1.78453 1.24973 1.21375 0.98714 0.92919 0.92375 1.22179 0.97552 0.92895 1.00907 1.21639 0.96114 1.00592 0.92528 1.22371 0.99511 0.97166 0.98566 1.22828 0.96015 0.90035 0.97381 1.67586 1.09836 1.40148 0.99493 1.22383 0.97111 0.99584 0.98863 1.20873 0.97927 0.86515 0.92587 0.93674 0.96084 0.88991 0.92647 0.92035 0.89873 0.75821 0.83362 0.84132 0.84318 0.82059 0.92212 0.92714 0.96141 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.24 11.19 55.49 0.62 -25.62 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 8 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 9 N -0.59 -15.04 2.99 -172.31 -0.52 -15.56 16 10 C 0.17 4.17 5.30 -3.71 -0.02 4.15 16 11 C -0.15 -2.79 5.55 -26.61 -0.15 -2.94 16 12 C 0.15 2.71 2.41 -67.89 -0.16 2.55 16 13 N -0.70 -11.10 5.07 -54.61 -0.28 -11.37 16 14 C 0.56 9.12 7.78 -12.18 -0.09 9.02 16 15 O -0.54 -10.15 15.99 5.35 0.09 -10.06 16 16 C 0.08 1.12 6.75 -83.01 -0.56 0.56 16 17 C -0.11 -1.24 9.63 -39.06 -0.38 -1.62 16 18 C -0.08 -0.64 10.17 -39.31 -0.40 -1.04 16 19 C -0.16 -1.07 10.11 -39.32 -0.40 -1.47 16 20 C 0.10 0.83 11.18 -17.56 -0.20 0.63 16 21 N -0.46 -5.48 9.54 -9.80 -0.09 -5.57 16 22 C -0.14 -2.64 5.65 -26.61 -0.15 -2.79 16 23 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16 24 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.09 2.43 6.07 -51.93 -0.31 2.12 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 30 H 0.41 5.80 7.93 -40.82 -0.32 5.48 16 31 H 0.15 1.57 7.64 -52.48 -0.40 1.17 16 32 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 34 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 LS Contribution 317.61 15.07 4.79 4.79 Total: -1.00 -32.04 317.61 -8.38 -40.42 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.20 Total: 3.14 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -2.76 Total: 3.16 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -0.26 Total: -58.13 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.04 -8.38 -40.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110823599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.381 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds