Wall clock time and date at job start Mon Mar 30 2020 01:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00531 * 2 1 4 4 H 1.48491 * 109.47228 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46733 * 300.00297 * 3 2 1 6 6 H 1.48497 * 109.46693 * 59.99956 * 3 2 1 7 7 C 1.38818 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00066 * 163.06603 * 7 2 1 9 9 N 1.36932 * 119.99911 * 343.07006 * 7 2 1 10 10 C 1.46926 * 120.63293 * 331.84881 * 9 7 2 11 11 C 1.53195 * 108.77672 * 233.58988 * 10 9 7 12 12 C 1.53033 * 109.30914 * 305.36205 * 11 10 9 13 13 N 1.46501 * 109.46012 * 181.38443 * 12 11 10 14 14 C 1.34776 * 120.00169 * 154.99455 * 13 12 11 15 15 O 1.21514 * 120.00098 * 0.02562 * 14 13 12 16 16 C 1.48178 * 119.99989 * 179.97438 * 14 13 12 17 17 C 1.39306 * 119.72330 * 180.02562 * 16 14 13 18 18 C 1.38586 * 119.05961 * 180.02562 * 17 16 14 19 19 C 1.38621 * 118.48869 * 0.02562 * 18 17 16 20 20 C 1.38565 * 119.35276 * 0.26988 * 19 18 17 21 21 N 1.31526 * 120.89896 * 359.44685 * 20 19 18 22 22 C 1.53042 * 109.54263 * 61.36720 * 12 11 10 23 23 C 1.46933 * 120.63218 * 151.82741 * 9 7 2 24 24 H 0.97000 * 119.99309 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.59214 * 113.79876 * 10 9 7 26 26 H 1.09004 * 109.69889 * 353.44226 * 10 9 7 27 27 H 1.09001 * 109.49617 * 185.41460 * 11 10 9 28 28 H 1.08996 * 109.49454 * 65.31261 * 11 10 9 29 29 H 1.09003 * 109.46453 * 301.35693 * 12 11 10 30 30 H 0.96998 * 120.00102 * 335.00570 * 13 12 11 31 31 H 1.08010 * 120.46801 * 0.02761 * 17 16 14 32 32 H 1.08002 * 120.75480 * 180.02562 * 18 17 16 33 33 H 1.07998 * 120.32635 * 180.02562 * 19 18 17 34 34 H 1.07992 * 119.54714 * 179.73086 * 20 19 18 35 35 H 1.09003 * 109.49721 * 58.57953 * 22 12 11 36 36 H 1.08996 * 109.50109 * 178.68345 * 22 12 11 37 37 H 1.08999 * 109.58699 * 246.20259 * 23 9 7 38 38 H 1.09002 * 109.58347 * 6.48241 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0552 -1.2224 -0.2730 9 7 1.3700 -2.3625 0.3443 10 6 0.2260 -2.3409 1.2660 11 6 0.4974 -3.3209 2.4118 12 6 0.8118 -4.7020 1.8327 13 7 1.0395 -5.6496 2.9265 14 6 0.8359 -6.9674 2.7298 15 8 0.4640 -7.3695 1.6452 16 6 1.0667 -7.9259 3.8360 17 6 0.8550 -9.2867 3.6263 18 6 1.0746 -10.1709 4.6706 19 6 1.4978 -9.6631 5.8890 20 6 1.6823 -8.2968 6.0283 21 7 1.4716 -7.4805 5.0188 22 6 2.0672 -4.6181 0.9614 23 6 1.8137 -3.6528 -0.2008 24 1 -0.4849 0.8401 -0.0004 25 1 -0.6771 -2.6410 0.7347 26 1 0.0968 -1.3358 1.6677 27 1 -0.3832 -3.3862 3.0508 28 1 1.3471 -2.9697 2.9972 29 1 -0.0283 -5.0417 1.2269 30 1 1.3365 -5.3287 3.7923 31 1 0.5245 -9.6475 2.6634 32 1 0.9194 -11.2315 4.5381 33 1 1.6783 -10.3254 6.7228 34 1 2.0077 -7.8974 6.9774 35 1 2.9022 -4.2547 1.5605 36 1 2.3040 -5.6067 0.5682 37 1 1.0400 -4.0599 -0.8518 38 1 2.7331 -3.5126 -0.7693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110823599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:04 Heat of formation + Delta-G solvation = -2.583504 kcal Electronic energy + Delta-G solvation = -20755.625001 eV Core-core repulsion = 17597.498860 eV Total energy + Delta-G solvation = -3158.126141 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.64822 -40.29670 -38.87437 -36.08591 -34.15445 -33.40283 -32.47848 -31.75950 -31.04868 -27.20033 -25.57847 -24.43076 -23.96606 -23.48606 -21.64490 -21.08627 -19.31134 -18.53564 -17.81482 -17.06964 -16.79789 -16.51409 -16.25090 -15.98341 -15.52158 -15.37610 -14.98305 -14.82159 -14.63233 -14.17573 -14.11828 -14.04069 -13.23468 -13.04099 -12.88973 -12.64270 -12.55485 -12.26416 -12.01653 -11.89519 -11.61806 -11.45650 -11.26489 -10.94209 -10.57673 -10.52582 -10.28268 -9.99501 -8.72394 -7.88572 -5.34530 -0.34881 0.27862 1.47756 1.49397 1.60525 1.70969 2.04379 2.51625 2.89122 3.13312 3.27758 3.63465 3.79401 3.88782 3.98955 4.01164 4.06967 4.12045 4.28818 4.42500 4.51851 4.61774 4.76741 4.79324 4.82230 4.96038 5.01118 5.09681 5.11475 5.17904 5.26461 5.44005 5.46853 5.63472 5.66222 5.68866 6.37638 6.41722 6.82197 7.12772 7.13333 7.82331 8.35844 9.18884 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042546 B = 0.003485 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.953119 B = 8032.562169 C = 8270.108057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.287 1.287 7 C -0.264 4.264 8 H 0.068 0.932 9 N -0.610 5.610 10 C 0.181 3.819 11 C -0.129 4.129 12 C 0.159 3.841 13 N -0.694 5.694 14 C 0.562 3.438 15 O -0.573 6.573 16 C 0.052 3.948 17 C -0.124 4.124 18 C -0.079 4.079 19 C -0.134 4.134 20 C 0.088 3.912 21 N -0.481 5.481 22 C -0.124 4.124 23 C 0.146 3.854 24 H 0.251 0.749 25 H -0.003 1.003 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.416 0.584 31 H 0.141 0.859 32 H 0.175 0.825 33 H 0.182 0.818 34 H 0.193 0.807 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.010 0.990 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.545 -20.042 15.380 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.214 1.214 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.054 3.946 11 C -0.168 4.168 12 C 0.055 3.945 13 N -0.344 5.344 14 C 0.348 3.652 15 O -0.453 6.453 16 C -0.085 4.085 17 C -0.146 4.146 18 C -0.104 4.104 19 C -0.154 4.154 20 C -0.072 4.072 21 N -0.193 5.193 22 C -0.164 4.164 23 C 0.020 3.980 24 H 0.060 0.940 25 H 0.015 0.985 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.253 0.747 31 H 0.159 0.841 32 H 0.193 0.807 33 H 0.199 0.801 34 H 0.209 0.791 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.028 0.972 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.317 -19.250 14.658 24.422 hybrid contribution 0.018 0.428 -0.276 0.510 sum 3.335 -18.822 14.382 23.922 Atomic orbital electron populations 1.70192 1.06708 1.25921 1.55284 1.25840 0.96081 1.01583 1.01023 0.85167 0.78585 0.79613 0.76813 1.19087 1.22021 1.21392 1.19558 0.92901 0.85809 1.41163 0.91458 1.44357 1.35960 1.02272 1.50719 1.20546 0.87808 0.97621 0.88600 1.22267 1.01880 0.93623 0.99075 1.20773 0.97546 0.88368 0.87841 1.45977 1.66688 1.05699 1.15988 1.18433 0.76954 0.82845 0.86964 1.90750 1.48727 1.79034 1.26787 1.20923 1.02320 0.92902 0.92333 1.22276 0.97886 0.92540 1.01857 1.22060 0.94825 1.01775 0.91765 1.22869 0.96344 0.96952 0.99217 1.23476 0.95274 0.90940 0.97482 1.67496 1.10604 1.41529 0.99671 1.22180 0.97533 0.98847 0.97831 1.20956 0.97550 0.85846 0.93670 0.93982 0.98520 0.91729 0.90656 0.91284 0.91949 0.74699 0.84142 0.80718 0.80067 0.79060 0.91685 0.92118 0.97184 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.79 11.19 21.65 0.24 -55.54 16 2 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 3 Si 0.97 45.07 29.59 68.60 2.03 47.10 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 7 C -0.26 -14.78 9.58 84.04 0.81 -13.98 16 8 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 9 N -0.61 -31.63 2.99 -699.07 -2.09 -33.72 16 10 C 0.18 8.90 5.30 86.36 0.46 9.36 16 11 C -0.13 -4.92 5.55 30.67 0.17 -4.75 16 12 C 0.16 5.87 2.41 45.02 0.11 5.98 16 13 N -0.69 -21.88 5.07 -444.97 -2.25 -24.13 16 14 C 0.56 18.38 7.78 86.89 0.68 19.05 16 15 O -0.57 -22.40 15.99 -3.76 -0.06 -22.46 16 16 C 0.05 1.34 6.75 41.91 0.28 1.62 16 17 C -0.12 -2.55 9.63 22.61 0.22 -2.34 16 18 C -0.08 -0.93 10.17 22.44 0.23 -0.70 16 19 C -0.13 -1.21 10.11 22.44 0.23 -0.99 16 20 C 0.09 1.20 11.18 84.82 0.95 2.15 16 21 N -0.48 -10.65 9.54 -184.91 -1.76 -12.41 16 22 C -0.12 -4.71 5.65 30.67 0.17 -4.54 16 23 C 0.15 6.53 6.52 86.36 0.56 7.09 16 24 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 25 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 26 H 0.06 3.53 6.07 -2.38 -0.01 3.52 16 27 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.06 2.59 7.58 -2.39 -0.02 2.57 16 30 H 0.42 11.55 7.93 -92.71 -0.74 10.81 16 31 H 0.14 2.99 7.64 -2.91 -0.02 2.96 16 32 H 0.18 0.83 8.06 -2.91 -0.02 0.80 16 33 H 0.18 0.14 8.06 -2.91 -0.02 0.11 16 34 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16 36 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.06 2.60 7.93 -2.39 -0.02 2.58 16 Total: -1.00 -71.90 317.61 1.71 -70.20 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.33 Total: 15.39 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 5.27 Total: 15.58 kcal Atomic # 7 Polarization: -119.94 SS G_CDS: -5.87 Total: -125.81 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.06 Total: -22.46 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -71.90 1.71 -70.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110823599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.614 kcal (2) G-P(sol) polarization free energy of solvation -71.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds