Wall clock time and date at job start Mon Mar 30 2020 01:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86792 * 120.00151 * 2 1 4 4 H 1.48506 * 109.47250 * 269.99827 * 3 2 1 5 5 H 1.48500 * 109.47258 * 29.99790 * 3 2 1 6 6 H 1.48499 * 109.47329 * 149.99885 * 3 2 1 7 7 C 1.38815 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00062 * 163.07563 * 7 2 1 9 9 N 1.36932 * 120.00342 * 343.07443 * 7 2 1 10 10 C 1.46931 * 120.63193 * 331.84739 * 9 7 2 11 11 C 1.53184 * 108.77858 * 233.58838 * 10 9 7 12 12 C 1.53046 * 109.31162 * 305.36242 * 11 10 9 13 13 N 1.46508 * 109.45981 * 181.38523 * 12 11 10 14 14 C 1.34769 * 119.99780 * 154.97364 * 13 12 11 15 15 O 1.21551 * 120.00210 * 0.02562 * 14 13 12 16 16 C 1.47843 * 119.99917 * 179.97438 * 14 13 12 17 17 C 1.40027 * 120.55833 * 179.97438 * 16 14 13 18 18 C 1.38358 * 118.28481 * 179.97438 * 17 16 14 19 19 C 1.38353 * 119.30590 * 0.28063 * 18 17 16 20 20 N 1.31931 * 121.07815 * 359.44644 * 19 18 17 21 21 C 1.31691 * 121.87683 * 0.54193 * 20 19 18 22 22 C 1.53035 * 109.52713 * 61.37462 * 12 11 10 23 23 C 1.46929 * 120.63296 * 151.82824 * 9 7 2 24 24 H 0.97000 * 120.00157 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.58679 * 113.79883 * 10 9 7 26 26 H 1.09006 * 109.70069 * 353.44224 * 10 9 7 27 27 H 1.09000 * 109.49751 * 185.41201 * 11 10 9 28 28 H 1.09004 * 109.52507 * 65.32919 * 11 10 9 29 29 H 1.08995 * 109.45833 * 301.36061 * 12 11 10 30 30 H 0.96994 * 119.99724 * 334.97417 * 13 12 11 31 31 H 1.07998 * 120.85436 * 359.96320 * 17 16 14 32 32 H 1.08003 * 120.34425 * 180.02562 * 18 17 16 33 33 H 1.07994 * 119.45790 * 179.71767 * 19 18 17 34 34 H 1.07999 * 119.71771 * 179.72362 * 21 20 19 35 35 H 1.09003 * 109.49978 * 58.57657 * 22 12 11 36 36 H 1.08996 * 109.50391 * 178.67610 * 22 12 11 37 37 H 1.09006 * 109.58263 * 246.20031 * 23 9 7 38 38 H 1.08993 * 109.58287 * 6.47962 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2226 -0.2717 9 7 1.3700 -2.3622 0.3463 10 6 0.2260 -2.3399 1.2680 11 6 0.4973 -3.3188 2.4145 12 6 0.8118 -4.7006 1.8366 13 7 1.0394 -5.6473 2.9313 14 6 0.8354 -6.9651 2.7358 15 8 0.4632 -7.3682 1.6512 16 6 1.0656 -7.9205 3.8403 17 6 0.8569 -9.2920 3.6504 18 6 1.0872 -10.1440 4.7159 19 6 1.5065 -9.6183 5.9250 20 7 1.7000 -8.3217 6.0734 21 6 1.4949 -7.4708 5.0894 22 6 2.0674 -4.6171 0.9656 23 6 1.8138 -3.6530 -0.1977 24 1 -0.4850 0.8400 -0.0004 25 1 -0.6771 -2.6405 0.7368 26 1 0.0966 -1.3345 1.6688 27 1 -0.3834 -3.3837 3.0536 28 1 1.3468 -2.9675 3.0002 29 1 -0.0282 -5.0407 1.2310 30 1 1.3368 -5.3256 3.7966 31 1 0.5245 -9.6749 2.6968 32 1 0.9371 -11.2079 4.6061 33 1 1.6826 -10.2806 6.7596 34 1 1.6599 -6.4158 5.2508 35 1 2.9021 -4.2531 1.5646 36 1 2.3045 -5.6059 0.5732 37 1 1.0401 -4.0607 -0.8484 38 1 2.7331 -3.5131 -0.7662 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110823828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:27 Heat of formation + Delta-G solvation = 18.971724 kcal Electronic energy + Delta-G solvation = -20760.821034 eV Core-core repulsion = 17603.629597 eV Total energy + Delta-G solvation = -3157.191436 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.76207 -39.23241 -37.31912 -34.56490 -32.79632 -32.52309 -31.46382 -30.10395 -29.31453 -25.53598 -24.34295 -23.73819 -22.32010 -21.91850 -20.49408 -19.46319 -18.12255 -17.05377 -16.87901 -16.40504 -15.46932 -15.06766 -15.03628 -14.73224 -13.98826 -13.88595 -13.63111 -13.53990 -13.36342 -12.99686 -12.65230 -12.57197 -12.31615 -11.49477 -11.15358 -10.90950 -10.72108 -10.54504 -10.35548 -10.23499 -10.21262 -10.06107 -9.82830 -9.67967 -9.53347 -9.49231 -8.79131 -8.47665 -6.70213 -5.81247 -3.23420 0.39250 0.90156 2.79969 3.17544 3.36701 3.43713 3.45958 3.63746 3.99510 4.46308 4.48372 4.54574 4.63854 4.75686 5.08517 5.23269 5.32060 5.39772 5.47655 5.54974 5.72595 5.79487 5.83199 6.04502 6.20013 6.23983 6.28549 6.49624 6.52142 6.55148 6.76885 6.84496 6.96729 7.28942 7.51328 7.54437 7.63591 7.78212 8.22936 8.42900 9.19040 9.82191 10.39187 11.27783 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042213 B = 0.003478 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.138644 B = 8049.009089 C = 8291.420371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.147 4.147 12 C 0.150 3.850 13 N -0.716 5.716 14 C 0.558 3.442 15 O -0.535 6.535 16 C -0.181 4.181 17 C -0.019 4.019 18 C -0.180 4.180 19 C 0.116 3.884 20 N -0.488 5.488 21 C 0.133 3.867 22 C -0.139 4.139 23 C 0.148 3.852 24 H 0.254 0.746 25 H 0.021 0.979 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.395 0.605 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.021 0.979 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.823 -16.993 11.238 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.047 3.953 13 N -0.366 5.366 14 C 0.343 3.657 15 O -0.413 6.413 16 C -0.187 4.187 17 C -0.046 4.046 18 C -0.200 4.200 19 C -0.041 4.041 20 N -0.196 5.196 21 C -0.026 4.026 22 C -0.180 4.180 23 C 0.021 3.979 24 H 0.064 0.936 25 H 0.039 0.961 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.230 0.770 31 H 0.165 0.835 32 H 0.160 0.840 33 H 0.177 0.823 34 H 0.177 0.823 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.726 -16.778 11.236 20.267 hybrid contribution 0.272 0.639 -0.355 0.780 sum 1.998 -16.139 10.881 19.567 Atomic orbital electron populations 1.70021 1.05266 1.25566 1.53894 1.25056 0.95293 0.98451 1.00843 0.86301 0.79149 0.83599 0.77746 1.21384 1.21555 1.20483 1.19178 0.92585 0.84756 1.41744 0.91657 1.44095 1.35827 1.01661 1.49971 1.20737 0.88916 0.97909 0.87628 1.22556 1.00651 0.94587 1.00938 1.21122 0.98725 0.88168 0.87238 1.46297 1.67996 1.06240 1.16037 1.18038 0.77890 0.82502 0.87261 1.90783 1.46496 1.78316 1.25723 1.21174 1.05827 0.95504 0.96146 1.21785 0.91522 0.91649 0.99625 1.22182 1.02190 1.01534 0.94101 1.23005 0.92631 0.91706 0.96745 1.67712 1.15255 1.03918 1.32753 1.23028 0.92079 0.99844 0.87600 1.22384 0.97051 0.99624 0.98906 1.20873 0.97964 0.86521 0.92582 0.93583 0.96067 0.88968 0.92627 0.92051 0.89782 0.77023 0.83459 0.84027 0.82269 0.82337 0.92219 0.92694 0.96153 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 11.19 55.49 0.62 -25.26 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 8 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 9 N -0.59 -14.68 2.99 -172.31 -0.52 -15.20 16 10 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16 11 C -0.15 -2.64 5.55 -26.61 -0.15 -2.78 16 12 C 0.15 2.57 2.42 -67.88 -0.16 2.40 16 13 N -0.72 -9.87 5.03 -54.71 -0.28 -10.15 16 14 C 0.56 8.14 7.75 -12.33 -0.10 8.04 16 15 O -0.54 -9.72 16.08 5.32 0.09 -9.63 16 16 C -0.18 -2.12 5.89 -104.82 -0.62 -2.74 16 17 C -0.02 -0.20 9.72 -38.87 -0.38 -0.57 16 18 C -0.18 -1.39 10.10 -39.49 -0.40 -1.79 16 19 C 0.12 0.95 11.17 -17.47 -0.20 0.75 16 20 N -0.49 -5.13 10.35 -12.91 -0.13 -5.26 16 21 C 0.13 1.38 10.71 -17.13 -0.18 1.20 16 22 C -0.14 -2.52 5.65 -26.61 -0.15 -2.67 16 23 C 0.15 3.15 6.52 -3.71 -0.02 3.12 16 24 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 2.37 6.07 -51.93 -0.31 2.06 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 30 H 0.40 4.32 6.67 -40.82 -0.27 4.05 16 31 H 0.15 1.46 7.74 -52.49 -0.41 1.05 16 32 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 33 H 0.16 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.16 1.31 6.42 -52.49 -0.34 0.98 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 315.39 15.07 4.75 4.75 Total: -1.00 -32.07 315.39 -8.16 -40.24 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.07 Total: 2.18 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.60 Total: 1.95 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.30 Total: -55.87 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.07 -8.16 -40.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110823828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.207 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds