Wall clock time and date at job start Mon Mar 30 2020 01:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86792 * 120.00151 * 2 1 4 4 H 1.48506 * 109.47250 * 269.99827 * 3 2 1 5 5 H 1.48500 * 109.47258 * 29.99790 * 3 2 1 6 6 H 1.48499 * 109.47329 * 149.99885 * 3 2 1 7 7 C 1.38815 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00062 * 163.07563 * 7 2 1 9 9 N 1.36932 * 120.00342 * 343.07443 * 7 2 1 10 10 C 1.46931 * 120.63193 * 331.84739 * 9 7 2 11 11 C 1.53184 * 108.77858 * 233.58838 * 10 9 7 12 12 C 1.53046 * 109.31162 * 305.36242 * 11 10 9 13 13 N 1.46508 * 109.45981 * 181.38523 * 12 11 10 14 14 C 1.34769 * 119.99780 * 154.97364 * 13 12 11 15 15 O 1.21551 * 120.00210 * 0.02562 * 14 13 12 16 16 C 1.47843 * 119.99917 * 179.97438 * 14 13 12 17 17 C 1.40027 * 120.55833 * 179.97438 * 16 14 13 18 18 C 1.38358 * 118.28481 * 179.97438 * 17 16 14 19 19 C 1.38353 * 119.30590 * 0.28063 * 18 17 16 20 20 N 1.31931 * 121.07815 * 359.44644 * 19 18 17 21 21 C 1.31691 * 121.87683 * 0.54193 * 20 19 18 22 22 C 1.53035 * 109.52713 * 61.37462 * 12 11 10 23 23 C 1.46929 * 120.63296 * 151.82824 * 9 7 2 24 24 H 0.97000 * 120.00157 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.58679 * 113.79883 * 10 9 7 26 26 H 1.09006 * 109.70069 * 353.44224 * 10 9 7 27 27 H 1.09000 * 109.49751 * 185.41201 * 11 10 9 28 28 H 1.09004 * 109.52507 * 65.32919 * 11 10 9 29 29 H 1.08995 * 109.45833 * 301.36061 * 12 11 10 30 30 H 0.96994 * 119.99724 * 334.97417 * 13 12 11 31 31 H 1.07998 * 120.85436 * 359.96320 * 17 16 14 32 32 H 1.08003 * 120.34425 * 180.02562 * 18 17 16 33 33 H 1.07994 * 119.45790 * 179.71767 * 19 18 17 34 34 H 1.07999 * 119.71771 * 179.72362 * 21 20 19 35 35 H 1.09003 * 109.49978 * 58.57657 * 22 12 11 36 36 H 1.08996 * 109.50391 * 178.67610 * 22 12 11 37 37 H 1.09006 * 109.58263 * 246.20031 * 23 9 7 38 38 H 1.08993 * 109.58287 * 6.47962 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2226 -0.2717 9 7 1.3700 -2.3622 0.3463 10 6 0.2260 -2.3399 1.2680 11 6 0.4973 -3.3188 2.4145 12 6 0.8118 -4.7006 1.8366 13 7 1.0394 -5.6473 2.9313 14 6 0.8354 -6.9651 2.7358 15 8 0.4632 -7.3682 1.6512 16 6 1.0656 -7.9205 3.8403 17 6 0.8569 -9.2920 3.6504 18 6 1.0872 -10.1440 4.7159 19 6 1.5065 -9.6183 5.9250 20 7 1.7000 -8.3217 6.0734 21 6 1.4949 -7.4708 5.0894 22 6 2.0674 -4.6171 0.9656 23 6 1.8138 -3.6530 -0.1977 24 1 -0.4850 0.8400 -0.0004 25 1 -0.6771 -2.6405 0.7368 26 1 0.0966 -1.3345 1.6688 27 1 -0.3834 -3.3837 3.0536 28 1 1.3468 -2.9675 3.0002 29 1 -0.0282 -5.0407 1.2310 30 1 1.3368 -5.3256 3.7966 31 1 0.5245 -9.6749 2.6968 32 1 0.9371 -11.2079 4.6061 33 1 1.6826 -10.2806 6.7596 34 1 1.6599 -6.4158 5.2508 35 1 2.9021 -4.2531 1.5646 36 1 2.3045 -5.6059 0.5732 37 1 1.0401 -4.0607 -0.8484 38 1 2.7331 -3.5131 -0.7662 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110823828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:26 Heat of formation + Delta-G solvation = -2.445464 kcal Electronic energy + Delta-G solvation = -20761.749753 eV Core-core repulsion = 17603.629597 eV Total energy + Delta-G solvation = -3158.120155 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.67468 -40.32808 -38.88242 -36.10530 -34.14121 -33.51831 -32.63598 -31.70219 -30.94076 -27.15392 -25.52990 -24.52671 -23.95955 -23.45830 -21.66318 -21.05388 -19.28409 -18.55709 -17.88039 -17.44144 -16.87043 -16.48430 -16.16097 -15.97172 -15.50835 -15.35763 -14.86508 -14.81152 -14.54261 -14.22042 -14.16516 -14.08050 -13.23371 -13.15658 -13.01767 -12.62353 -12.52735 -12.26497 -12.03538 -11.88921 -11.60546 -11.44815 -11.19761 -10.97681 -10.56394 -10.48104 -10.30597 -10.02283 -8.71469 -7.88383 -5.34057 -0.38405 0.19845 1.48502 1.49887 1.59902 1.79720 2.03631 2.52005 2.84537 3.27381 3.30653 3.63430 3.71552 3.81190 3.85260 3.94369 4.00952 4.05988 4.30160 4.43618 4.45466 4.63025 4.66248 4.77893 4.83589 4.97754 5.01092 5.03686 5.13210 5.13363 5.28087 5.44919 5.46746 5.58409 5.64137 5.70434 6.38308 6.47081 6.83565 7.12199 7.14021 7.83312 8.36240 9.18821 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042213 B = 0.003478 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.138644 B = 8049.009089 C = 8291.420371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.265 4.265 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.179 3.821 11 C -0.130 4.130 12 C 0.162 3.838 13 N -0.704 5.704 14 C 0.560 3.440 15 O -0.578 6.578 16 C -0.200 4.200 17 C -0.031 4.031 18 C -0.168 4.168 19 C 0.120 3.880 20 N -0.508 5.508 21 C 0.134 3.866 22 C -0.124 4.124 23 C 0.145 3.855 24 H 0.251 0.749 25 H -0.005 1.005 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.412 0.588 31 H 0.143 0.857 32 H 0.177 0.823 33 H 0.195 0.805 34 H 0.175 0.825 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.008 0.992 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.066 -18.488 13.442 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.797 3.203 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.395 4.395 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.169 4.169 12 C 0.057 3.943 13 N -0.355 5.355 14 C 0.347 3.653 15 O -0.459 6.459 16 C -0.206 4.206 17 C -0.058 4.058 18 C -0.188 4.188 19 C -0.037 4.037 20 N -0.217 5.217 21 C -0.024 4.024 22 C -0.164 4.164 23 C 0.019 3.981 24 H 0.060 0.940 25 H 0.013 0.987 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.250 0.750 31 H 0.161 0.839 32 H 0.194 0.806 33 H 0.212 0.788 34 H 0.192 0.808 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.026 0.974 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.994 -18.295 13.480 22.921 hybrid contribution -0.129 0.974 -1.041 1.431 sum 2.865 -17.321 12.439 21.517 Atomic orbital electron populations 1.70180 1.06698 1.25985 1.55240 1.25820 0.96046 1.01545 1.01046 0.85259 0.78146 0.79411 0.77495 1.21387 1.21752 1.19343 1.19514 0.92894 0.85856 1.41246 0.91487 1.44355 1.35973 1.02194 1.50772 1.20558 0.87708 0.97761 0.88713 1.22277 1.02148 0.93484 0.99019 1.20717 0.97413 0.88330 0.87816 1.45984 1.67884 1.05721 1.15893 1.18469 0.76635 0.82721 0.87453 1.90761 1.48483 1.78966 1.27651 1.20949 1.08437 0.95465 0.95708 1.21959 0.91778 0.91555 1.00489 1.22519 1.00476 1.02896 0.92873 1.23662 0.90725 0.91372 0.97897 1.67796 1.16092 1.05076 1.32750 1.23220 0.91470 1.00781 0.86963 1.22179 0.97715 0.98737 0.97815 1.20962 0.97424 0.85938 0.93823 0.93994 0.98720 0.91779 0.90347 0.90897 0.92108 0.75012 0.83876 0.80590 0.78841 0.80835 0.91353 0.92163 0.97440 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.98 11.19 21.65 0.24 -54.74 16 2 C -0.05 -2.72 4.92 84.86 0.42 -2.31 16 3 Si 0.97 44.36 29.59 68.60 2.03 46.39 16 4 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.27 -14.53 9.58 84.03 0.81 -13.72 16 8 H 0.07 3.58 7.89 -2.91 -0.02 3.55 16 9 N -0.61 -30.71 2.99 -699.07 -2.09 -32.81 16 10 C 0.18 8.49 5.30 86.36 0.46 8.95 16 11 C -0.13 -4.54 5.55 30.67 0.17 -4.37 16 12 C 0.16 5.44 2.42 45.02 0.11 5.55 16 13 N -0.70 -18.48 5.03 -445.28 -2.24 -20.73 16 14 C 0.56 15.95 7.75 86.79 0.67 16.63 16 15 O -0.58 -21.16 16.08 -3.88 -0.06 -21.22 16 16 C -0.20 -4.41 5.89 -19.99 -0.12 -4.53 16 17 C -0.03 -0.59 9.72 22.73 0.22 -0.37 16 18 C -0.17 -2.03 10.10 22.33 0.23 -1.81 16 19 C 0.12 1.52 11.17 84.71 0.95 2.46 16 20 N -0.51 -9.25 10.35 -194.76 -2.01 -11.27 16 21 C 0.13 2.49 10.71 85.02 0.91 3.40 16 22 C -0.12 -4.42 5.65 30.67 0.17 -4.25 16 23 C 0.14 6.26 6.52 86.36 0.56 6.82 16 24 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 25 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 26 H 0.06 3.40 6.07 -2.38 -0.01 3.39 16 27 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.06 2.37 7.58 -2.39 -0.02 2.35 16 30 H 0.41 8.07 6.67 -92.71 -0.62 7.46 16 31 H 0.14 2.74 7.74 -2.91 -0.02 2.72 16 32 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 33 H 0.19 1.02 8.06 -2.91 -0.02 1.00 16 34 H 0.17 2.45 6.42 -2.91 -0.02 2.44 16 35 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 38 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 Total: -1.00 -70.88 315.39 1.87 -69.01 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.45 Total: 12.90 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 5.55 Total: 12.46 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -6.11 Total: -119.53 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.06 Total: -21.22 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -70.88 1.87 -69.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110823828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.564 kcal (2) G-P(sol) polarization free energy of solvation -70.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds