Wall clock time and date at job start Mon Mar 30 2020 02:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00307 * 2 1 4 4 H 1.48496 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46719 * 299.99920 * 3 2 1 6 6 H 1.48497 * 109.47053 * 60.00025 * 3 2 1 7 7 C 1.38814 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00089 * 163.06011 * 7 2 1 9 9 N 1.36938 * 119.99637 * 343.06862 * 7 2 1 10 10 C 1.46927 * 120.63456 * 331.83201 * 9 7 2 11 11 C 1.53191 * 108.77935 * 233.63423 * 10 9 7 12 12 C 1.53038 * 109.31261 * 305.36825 * 11 10 9 13 13 N 1.46500 * 109.45575 * 181.38576 * 12 11 10 14 14 C 1.34779 * 119.99741 * 154.69639 * 13 12 11 15 15 O 1.21520 * 120.00067 * 359.97438 * 14 13 12 16 16 C 1.48153 * 119.99907 * 179.97438 * 14 13 12 17 17 C 1.39817 * 120.92297 * 359.71554 * 16 14 13 18 18 C 1.38151 * 119.00153 * 179.79890 * 17 16 14 19 19 N 1.31814 * 120.89566 * 0.49056 * 18 17 16 20 20 C 1.31815 * 122.04850 * 359.73415 * 19 18 17 21 21 C 1.38154 * 120.89677 * 0.03026 * 20 19 18 22 22 C 1.53032 * 109.52921 * 61.37124 * 12 11 10 23 23 C 1.46932 * 120.63110 * 151.86311 * 9 7 2 24 24 H 0.97004 * 119.99383 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.58478 * 113.84480 * 10 9 7 26 26 H 1.09001 * 109.69795 * 353.49593 * 10 9 7 27 27 H 1.08994 * 109.49557 * 185.41083 * 11 10 9 28 28 H 1.09005 * 109.49322 * 65.31648 * 11 10 9 29 29 H 1.09004 * 109.45565 * 301.35423 * 12 11 10 30 30 H 0.96993 * 120.00382 * 334.96568 * 13 12 11 31 31 H 1.07995 * 120.49737 * 0.02562 * 17 16 14 32 32 H 1.07992 * 119.54962 * 180.23179 * 18 17 16 33 33 H 1.07997 * 119.55194 * 180.02562 * 20 19 18 34 34 H 1.07998 * 120.50174 * 179.97438 * 21 20 19 35 35 H 1.08993 * 109.50277 * 58.57673 * 22 12 11 36 36 H 1.09002 * 109.49884 * 178.68095 * 22 12 11 37 37 H 1.08993 * 109.58462 * 246.15225 * 23 9 7 38 38 H 1.08998 * 109.58002 * 6.43288 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2720 9 7 1.3700 -2.3622 0.3464 10 6 0.2262 -2.3398 1.2684 11 6 0.4982 -3.3180 2.4155 12 6 0.8132 -4.6999 1.8383 13 7 1.0414 -5.6458 2.9335 14 6 0.8326 -6.9632 2.7405 15 8 0.4547 -7.3664 1.6582 16 6 1.0639 -7.9199 3.8479 17 6 1.5044 -7.4778 5.0990 18 6 1.7032 -8.4039 6.1047 19 7 1.4927 -9.6879 5.8938 20 6 1.0819 -10.1471 4.7285 21 6 0.8534 -9.2905 3.6690 22 6 2.0685 -4.6163 0.9669 23 6 1.8141 -3.6531 -0.1969 24 1 -0.4849 0.8401 -0.0004 25 1 -0.6769 -2.6410 0.7377 26 1 0.0966 -1.3342 1.6686 27 1 -0.3822 -3.3828 3.0548 28 1 1.3480 -2.9657 3.0003 29 1 -0.0269 -5.0407 1.2332 30 1 1.3390 -5.3235 3.7986 31 1 1.6829 -6.4278 5.2777 32 1 2.0397 -8.0717 7.0757 33 1 0.9217 -11.2074 4.6003 34 1 0.5173 -9.6737 2.7169 35 1 2.9032 -4.2516 1.5654 36 1 2.3058 -5.6053 0.5750 37 1 1.0405 -4.0614 -0.8470 38 1 2.7333 -3.5132 -0.7658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110824108.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:06 Heat of formation + Delta-G solvation = 19.373922 kcal Electronic energy + Delta-G solvation = -20748.746397 eV Core-core repulsion = 17591.572401 eV Total energy + Delta-G solvation = -3157.173996 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.76089 -39.29844 -37.36797 -34.60938 -33.11218 -32.03478 -31.46848 -30.17031 -29.40935 -25.67249 -24.42342 -23.67546 -22.35354 -21.96651 -20.53962 -19.54492 -18.21289 -16.89393 -16.70096 -15.97554 -15.53981 -15.39528 -15.07873 -14.76732 -14.08321 -14.00176 -13.87709 -13.62057 -13.56183 -13.02284 -12.69082 -12.45383 -11.98371 -11.52793 -11.18646 -10.95040 -10.77215 -10.55385 -10.36571 -10.26215 -10.15314 -10.08473 -9.85769 -9.74721 -9.54013 -9.51825 -8.84733 -8.50718 -6.73115 -5.83627 -3.26061 0.47709 0.77966 2.81407 3.08783 3.34285 3.42464 3.44623 3.62443 4.10476 4.37346 4.46073 4.50762 4.68251 4.77851 5.17722 5.27094 5.34589 5.42792 5.44230 5.50958 5.54803 5.78338 5.79186 6.00692 6.16325 6.24305 6.28606 6.45619 6.48364 6.51160 6.73591 6.80255 6.93668 7.25732 7.48034 7.58117 7.60013 7.76326 8.16228 8.40329 9.16557 9.79544 10.36416 11.25356 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042317 B = 0.003460 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.516621 B = 8090.980540 C = 8331.225390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.253 4.253 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.150 3.850 13 N -0.713 5.713 14 C 0.551 3.449 15 O -0.530 6.530 16 C -0.082 4.082 17 C -0.143 4.143 18 C 0.095 3.905 19 N -0.474 5.474 20 C 0.094 3.906 21 C -0.118 4.118 22 C -0.139 4.139 23 C 0.147 3.853 24 H 0.254 0.746 25 H 0.021 0.979 26 H 0.093 0.907 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.396 0.604 31 H 0.140 0.860 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.148 0.852 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.021 0.979 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 -14.853 11.413 18.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.047 3.953 13 N -0.363 5.363 14 C 0.337 3.663 15 O -0.407 6.407 16 C -0.093 4.093 17 C -0.164 4.164 18 C -0.062 4.062 19 N -0.183 5.183 20 C -0.062 4.062 21 C -0.138 4.138 22 C -0.180 4.180 23 C 0.020 3.980 24 H 0.064 0.936 25 H 0.040 0.960 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.231 0.769 31 H 0.158 0.842 32 H 0.179 0.821 33 H 0.180 0.820 34 H 0.166 0.834 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.039 0.961 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.938 -15.537 11.262 19.287 hybrid contribution 0.406 1.647 -0.218 1.710 sum 2.343 -13.890 11.044 17.900 Atomic orbital electron populations 1.70035 1.05265 1.25466 1.53944 1.25064 0.95305 0.98472 1.00820 0.86220 0.79370 0.83879 0.77296 1.20245 1.21691 1.21554 1.19235 0.92628 0.84722 1.41651 0.91562 1.44106 1.35822 1.01673 1.49966 1.20740 0.88945 0.97916 0.87611 1.22555 1.00618 0.94561 1.00970 1.21141 0.98784 0.88184 0.87212 1.46291 1.67687 1.06233 1.16129 1.18199 0.78183 0.82628 0.87319 1.90787 1.45905 1.78272 1.25733 1.20560 0.99526 0.94868 0.94371 1.22400 0.98994 1.01769 0.93200 1.22763 0.96065 0.88155 0.99192 1.67563 1.10290 1.16709 1.23783 1.22820 0.95008 1.00582 0.87839 1.22361 0.97658 0.92490 1.01312 1.22383 0.96998 0.99658 0.98911 1.20874 0.98005 0.86511 0.92566 0.93620 0.96042 0.88937 0.92639 0.92074 0.89742 0.76945 0.84231 0.82109 0.82025 0.83391 0.92219 0.92690 0.96113 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.71 11.19 55.49 0.62 -25.09 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.26 29.59 -169.99 -5.03 16.23 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.25 -6.81 9.58 -15.06 -0.14 -6.95 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.56 2.99 -172.32 -0.52 -15.07 16 10 C 0.17 4.00 5.30 -3.71 -0.02 3.98 16 11 C -0.15 -2.59 5.55 -26.61 -0.15 -2.74 16 12 C 0.15 2.52 2.42 -67.89 -0.16 2.36 16 13 N -0.71 -9.65 5.03 -54.61 -0.27 -9.92 16 14 C 0.55 7.95 7.77 -12.19 -0.09 7.86 16 15 O -0.53 -9.57 16.10 5.35 0.09 -9.48 16 16 C -0.08 -0.94 5.91 -104.64 -0.62 -1.56 16 17 C -0.14 -1.28 9.62 -39.02 -0.38 -1.65 16 18 C 0.09 0.82 11.17 -17.59 -0.20 0.62 16 19 N -0.47 -4.82 10.34 -13.30 -0.14 -4.96 16 20 C 0.09 0.86 11.17 -17.59 -0.20 0.67 16 21 C -0.12 -1.23 9.68 -39.02 -0.38 -1.61 16 22 C -0.14 -2.48 5.65 -26.61 -0.15 -2.63 16 23 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 24 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.61 7.57 -51.93 -0.39 1.21 16 30 H 0.40 4.18 6.74 -40.82 -0.28 3.91 16 31 H 0.14 0.91 6.54 -52.49 -0.34 0.57 16 32 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.15 1.49 7.74 -52.49 -0.41 1.08 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 315.58 15.07 4.76 4.76 Total: -1.00 -31.87 315.58 -8.17 -40.03 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.08 Total: 2.11 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.60 Total: 1.40 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.31 Total: -55.05 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.87 -8.17 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110824108.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.406 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds