Wall clock time and date at job start Mon Mar 30 2020 01:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 120.00295 * 2 1 4 4 H 1.48505 * 109.47039 * 240.00246 * 3 2 1 5 5 H 1.48500 * 109.47004 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46886 * 120.00334 * 3 2 1 7 7 C 1.38954 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00208 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00071 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00034 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00377 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99905 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47202 * 184.49894 * 12 10 9 14 14 C 1.46902 * 110.99239 * 283.99884 * 13 12 10 15 15 C 1.50708 * 109.46538 * 169.99846 * 14 13 12 16 16 C 1.38678 * 120.41451 * 89.99891 * 15 14 13 17 17 C 1.38630 * 118.41465 * 179.97438 * 16 15 14 18 18 C 1.38228 * 119.16409 * 0.02562 * 17 16 15 19 19 N 1.31853 * 120.76257 * 359.97438 * 18 17 16 20 20 C 1.31891 * 121.72512 * 359.71039 * 19 18 17 21 21 C 1.46896 * 111.00236 * 160.04660 * 13 12 10 22 22 C 1.52998 * 117.49891 * 11.99585 * 21 13 12 23 23 C 1.52997 * 60.00032 * 252.51522 * 22 21 13 24 24 H 0.96999 * 119.99903 * 359.97438 * 1 2 3 25 25 H 0.97004 * 119.99975 * 359.97438 * 9 7 2 26 26 H 1.08995 * 109.47328 * 64.49341 * 12 10 9 27 27 H 1.09001 * 109.47254 * 304.49252 * 12 10 9 28 28 H 1.08996 * 109.47469 * 50.00027 * 14 13 12 29 29 H 1.08997 * 109.47182 * 289.99164 * 14 13 12 30 30 H 1.07992 * 120.79178 * 359.97438 * 16 15 14 31 31 H 1.08002 * 120.41653 * 180.02562 * 17 16 15 32 32 H 1.07997 * 119.61577 * 179.97438 * 18 17 16 33 33 H 1.08000 * 119.61406 * 180.30775 * 20 19 18 34 34 H 1.08998 * 115.55273 * 157.70631 * 21 13 12 35 35 H 1.09004 * 117.49924 * 0.02562 * 22 21 13 36 36 H 1.08998 * 117.50066 * 145.01880 * 22 21 13 37 37 H 1.09003 * 117.49798 * 252.50882 * 23 22 21 38 38 H 1.09002 * 117.51763 * 107.48998 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0026 11 8 3.2100 -3.5580 -0.0031 12 6 1.2435 -4.8630 -0.0032 13 7 2.1944 -5.9776 0.1043 14 6 2.8769 -6.2124 -1.1752 15 6 4.0087 -7.1861 -0.9694 16 6 3.7945 -8.5498 -1.1019 17 6 4.8651 -9.4080 -0.9041 18 6 6.1014 -8.8797 -0.5831 19 7 6.2683 -7.5771 -0.4653 20 6 5.2742 -6.7308 -0.6524 21 6 1.5249 -7.1972 0.5755 22 6 -0.0050 -7.2008 0.5947 23 6 0.7763 -7.1223 1.9078 24 1 -0.4850 0.8400 0.0004 25 1 0.3533 -2.3906 -0.0016 26 1 0.6783 -4.9557 -0.9305 27 1 0.5582 -4.8872 0.8440 28 1 3.2725 -5.2702 -1.5543 29 1 2.1690 -6.6249 -1.8942 30 1 2.8170 -8.9340 -1.3533 31 1 4.7347 -10.4759 -0.9995 32 1 6.9404 -9.5417 -0.4269 33 1 5.4503 -5.6700 -0.5521 34 1 2.0277 -8.1333 0.3327 35 1 -0.5147 -6.2984 0.2572 36 1 -0.5090 -8.1394 0.3642 37 1 0.7863 -8.0093 2.5413 38 1 0.7809 -6.1682 2.4348 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124729629.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:15 Heat of formation + Delta-G solvation = 19.523619 kcal Electronic energy + Delta-G solvation = -20892.115018 eV Core-core repulsion = 17734.947514 eV Total energy + Delta-G solvation = -3157.167504 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32889 -40.40328 -39.01146 -36.01572 -35.26295 -33.40613 -33.18212 -32.29640 -29.10847 -26.86391 -25.87391 -24.47629 -23.27373 -22.94665 -21.76754 -20.50156 -19.74301 -18.34985 -17.91081 -17.25522 -17.09489 -16.71134 -16.40537 -15.75899 -15.64298 -15.45718 -14.94509 -14.66512 -14.34529 -14.17083 -13.92604 -13.70293 -13.46215 -13.16937 -13.03635 -12.67403 -12.42641 -12.32866 -12.15704 -12.11258 -11.79552 -11.47039 -11.22949 -10.71180 -10.34822 -10.26837 -9.99163 -9.91180 -9.01887 -8.45438 -5.93690 0.20208 0.37608 1.39544 1.41273 1.51921 2.06830 2.27839 2.56923 2.97773 3.00860 3.21239 3.46654 3.55991 3.77221 3.91680 3.98883 4.05424 4.11463 4.14391 4.16874 4.27591 4.33474 4.49516 4.54974 4.67902 4.80895 4.89759 4.90727 4.92656 5.09244 5.20652 5.26831 5.37695 5.41790 5.82604 5.87693 6.06399 6.19162 6.62176 7.09000 7.14585 7.58096 8.14351 8.71838 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021309 B = 0.004472 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.713676 B = 6259.213975 C = 7302.956162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.990 3.010 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.331 4.331 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.441 3.559 11 O -0.612 6.612 12 C 0.057 3.943 13 N -0.500 5.500 14 C 0.107 3.893 15 C -0.124 4.124 16 C -0.071 4.071 17 C -0.162 4.162 18 C 0.081 3.919 19 N -0.518 5.518 20 C 0.098 3.902 21 C 0.008 3.992 22 C -0.205 4.205 23 C -0.180 4.180 24 H 0.277 0.723 25 H 0.395 0.605 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.161 0.839 31 H 0.174 0.826 32 H 0.181 0.819 33 H 0.128 0.872 34 H 0.137 0.863 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.512 -20.143 -2.089 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.461 4.461 8 H 0.096 0.904 9 N -0.213 5.213 10 C 0.228 3.772 11 O -0.497 6.497 12 C -0.074 4.074 13 N -0.222 5.222 14 C -0.021 4.021 15 C -0.126 4.126 16 C -0.098 4.098 17 C -0.181 4.181 18 C -0.077 4.077 19 N -0.227 5.227 20 C -0.058 4.058 21 C -0.101 4.101 22 C -0.244 4.244 23 C -0.218 4.218 24 H 0.087 0.913 25 H 0.229 0.771 26 H 0.093 0.907 27 H 0.124 0.876 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.179 0.821 31 H 0.191 0.809 32 H 0.197 0.803 33 H 0.146 0.854 34 H 0.154 0.846 35 H 0.112 0.888 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.355 -19.494 -1.539 19.601 hybrid contribution -1.411 0.966 -0.568 1.802 sum -0.057 -18.528 -2.107 18.648 Atomic orbital electron populations 1.69661 1.06769 1.29269 1.50534 1.25982 0.96502 1.02242 0.96392 0.85034 0.77797 0.76898 0.78884 1.19727 1.19434 1.19912 1.19601 0.92637 0.84021 1.49820 0.90421 1.41909 1.09226 1.04647 1.65509 1.20797 0.88368 0.85870 0.82181 1.90484 1.15597 1.87791 1.55831 1.21809 0.93829 0.88570 1.03187 1.61270 1.28315 1.03625 1.28963 1.20889 0.93552 0.97782 0.89844 1.20681 0.95329 0.95608 1.01006 1.21837 1.00871 0.91392 0.95677 1.22491 0.92878 1.02690 1.00072 1.23357 0.98510 0.90943 0.94863 1.67684 1.34839 1.05604 1.14578 1.22535 0.89297 0.99193 0.94805 1.22903 0.91866 0.93551 1.01759 1.23661 0.94688 1.04590 1.01473 1.23129 1.03963 1.03417 0.91251 0.91346 0.77123 0.90661 0.87634 0.91753 0.91762 0.82122 0.80853 0.80250 0.85438 0.84588 0.88758 0.86284 0.86586 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.03 13.05 21.66 0.28 -49.74 16 2 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 3 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.58 -29.72 5.29 -306.98 -1.62 -31.34 16 10 C 0.44 21.11 7.52 87.66 0.66 21.77 16 11 O -0.61 -33.90 14.62 -3.05 -0.04 -33.95 16 12 C 0.06 1.97 4.12 85.56 0.35 2.32 16 13 N -0.50 -16.07 4.31 -880.06 -3.79 -19.86 16 14 C 0.11 3.26 4.75 85.56 0.41 3.67 16 15 C -0.12 -3.47 5.02 -19.77 -0.10 -3.57 16 16 C -0.07 -1.39 8.14 22.47 0.18 -1.21 16 17 C -0.16 -2.70 10.11 22.36 0.23 -2.47 16 18 C 0.08 1.74 11.18 84.69 0.95 2.69 16 19 N -0.52 -16.01 10.36 -195.85 -2.03 -18.04 16 20 C 0.10 3.29 10.86 84.67 0.92 4.21 16 21 C 0.01 0.19 5.83 44.91 0.26 0.45 16 22 C -0.21 -3.97 9.57 30.59 0.29 -3.68 16 23 C -0.18 -4.03 9.89 30.59 0.30 -3.73 16 24 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 25 H 0.40 19.38 7.90 -92.71 -0.73 18.64 16 26 H 0.08 2.29 7.81 -2.39 -0.02 2.27 16 27 H 0.11 3.36 5.52 -2.39 -0.01 3.35 16 28 H 0.06 2.47 6.54 -2.39 -0.02 2.45 16 29 H 0.06 1.60 8.07 -2.39 -0.02 1.58 16 30 H 0.16 2.09 7.50 -2.91 -0.02 2.07 16 31 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.13 5.00 8.06 -2.91 -0.02 4.98 16 34 H 0.14 2.72 5.32 -2.39 -0.01 2.71 16 35 H 0.09 1.97 6.07 -2.39 -0.01 1.96 16 36 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.08 2.08 7.39 -2.39 -0.02 2.06 16 Total: -1.00 -71.10 318.72 0.91 -70.19 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: 0.35 Total: 35.06 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 5.73 Total: 2.13 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -7.16 Total: -118.98 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.04 Total: -33.95 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -71.10 0.91 -70.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124729629.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.712 kcal (2) G-P(sol) polarization free energy of solvation -71.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds