Wall clock time and date at job start Mon Mar 30 2020 02:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99620 * 2 1 4 4 H 1.48504 * 109.46841 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47113 * 300.00205 * 3 2 1 6 6 H 1.48500 * 109.46848 * 60.00560 * 3 2 1 7 7 C 1.38951 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99496 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99783 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99669 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99971 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99831 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46754 * 185.44216 * 12 10 9 14 14 C 1.46897 * 111.00131 * 71.90770 * 13 12 10 15 15 C 1.50701 * 109.47359 * 189.99682 * 14 13 12 16 16 C 1.38646 * 120.79145 * 269.71604 * 15 14 13 17 17 C 1.38209 * 119.16339 * 179.79573 * 16 15 14 18 18 N 1.31864 * 120.76184 * 0.49049 * 17 16 15 19 19 C 1.31872 * 121.72838 * 359.74058 * 18 17 16 20 20 C 1.38206 * 120.76158 * 0.02562 * 19 18 17 21 21 C 1.46903 * 110.99921 * 195.85955 * 13 12 10 22 22 C 1.52994 * 117.50262 * 132.60749 * 21 13 12 23 23 C 1.52992 * 117.49766 * 63.98498 * 21 13 12 24 24 H 0.97000 * 120.00683 * 359.97438 * 1 2 3 25 25 H 0.97001 * 120.00510 * 0.02562 * 9 7 2 26 26 H 1.08993 * 109.47100 * 65.44137 * 12 10 9 27 27 H 1.08997 * 109.47179 * 305.43853 * 12 10 9 28 28 H 1.09001 * 109.46932 * 309.99553 * 14 13 12 29 29 H 1.09002 * 109.47530 * 69.99505 * 14 13 12 30 30 H 1.08002 * 120.41755 * 0.02562 * 16 15 14 31 31 H 1.08001 * 119.61388 * 180.21043 * 17 16 15 32 32 H 1.07996 * 119.61746 * 180.02562 * 19 18 17 33 33 H 1.08004 * 120.41388 * 179.97438 * 20 19 18 34 34 H 1.09004 * 115.54819 * 278.31842 * 21 13 12 35 35 H 1.09008 * 117.49811 * 359.97438 * 22 21 13 36 36 H 1.08994 * 117.50072 * 145.01575 * 22 21 13 37 37 H 1.09005 * 117.49642 * 214.98263 * 23 21 13 38 38 H 1.09000 * 117.49995 * 359.97438 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8893 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2032 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5577 -0.0021 12 6 1.2438 -4.8629 -0.0022 13 7 2.1931 -5.9764 0.1281 14 6 2.7499 -6.0374 1.4861 15 6 3.8895 -7.0230 1.5180 16 6 3.6643 -8.3590 1.8123 17 6 4.7335 -9.2347 1.8282 18 7 5.9565 -8.8104 1.5772 19 6 6.2085 -7.5464 1.2982 20 6 5.1889 -6.6142 1.2596 21 6 1.5630 -7.2513 -0.2403 22 6 2.3328 -8.1716 -1.1896 23 6 1.0988 -7.4173 -1.6886 24 1 -0.4851 0.8400 0.0004 25 1 0.3534 -2.3907 -0.0005 26 1 0.6919 -4.9634 -0.9367 27 1 0.5465 -4.8802 0.8353 28 1 3.1143 -5.0513 1.7740 29 1 1.9745 -6.3558 2.1828 30 1 2.6654 -8.7118 2.0228 31 1 4.5658 -10.2776 2.0532 32 1 7.2233 -7.2362 1.0976 33 1 5.4017 -5.5803 1.0309 34 1 0.9611 -7.7204 0.5381 35 1 3.3067 -7.8309 -1.5413 36 1 2.2377 -9.2464 -1.0358 37 1 0.1916 -7.9960 -1.8631 38 1 1.2605 -6.5805 -2.3680 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124885183.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:37 Heat of formation + Delta-G solvation = 36.097080 kcal Electronic energy + Delta-G solvation = -20929.434586 eV Core-core repulsion = 17772.985761 eV Total energy + Delta-G solvation = -3156.448825 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.13638 -38.76052 -37.40734 -34.58539 -33.81601 -32.28503 -31.20490 -31.04800 -27.76711 -25.55946 -24.08700 -23.28849 -22.28584 -21.89370 -20.34294 -19.10581 -17.85559 -16.91773 -16.33715 -15.95769 -15.71702 -15.32800 -14.87846 -14.68852 -14.28450 -13.98178 -13.76438 -13.52685 -13.37663 -12.85989 -12.67502 -12.18655 -11.76078 -11.56686 -11.52131 -11.35092 -11.23036 -10.97300 -10.41313 -10.36091 -10.25233 -10.14842 -9.53051 -9.43881 -9.36704 -8.99335 -8.48314 -8.00182 -7.94635 -6.43446 -3.84237 1.28122 1.39276 3.14872 3.25703 3.32447 3.71139 3.83847 3.91258 4.08658 4.23148 4.55706 4.76598 4.87361 4.96795 4.99360 5.11091 5.21697 5.22499 5.31213 5.36450 5.47595 5.62117 5.71018 5.72214 5.82574 5.89557 5.95034 6.02149 6.07222 6.16985 6.26564 6.28218 6.59445 6.85576 7.13773 7.32628 7.53662 8.04683 8.07687 8.60012 9.16648 9.52921 10.04446 10.74370 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023361 B = 0.004356 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.304787 B = 6426.532995 C = 7256.651269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.565 5.565 10 C 0.443 3.557 11 O -0.576 6.576 12 C 0.047 3.953 13 N -0.480 5.480 14 C 0.096 3.904 15 C -0.018 4.018 16 C -0.163 4.163 17 C 0.088 3.912 18 N -0.492 5.492 19 C 0.090 3.910 20 C -0.142 4.142 21 C 0.005 3.995 22 C -0.157 4.157 23 C -0.173 4.173 24 H 0.271 0.729 25 H 0.392 0.608 26 H 0.092 0.908 27 H 0.049 0.951 28 H 0.103 0.897 29 H 0.039 0.961 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.236 -15.389 1.969 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.228 3.772 11 O -0.460 6.460 12 C -0.083 4.083 13 N -0.204 5.204 14 C -0.031 4.031 15 C -0.027 4.027 16 C -0.184 4.184 17 C -0.069 4.069 18 N -0.202 5.202 19 C -0.066 4.066 20 C -0.162 4.162 21 C -0.104 4.104 22 C -0.194 4.194 23 C -0.210 4.210 24 H 0.081 0.919 25 H 0.225 0.775 26 H 0.110 0.890 27 H 0.067 0.933 28 H 0.121 0.879 29 H 0.057 0.943 30 H 0.143 0.857 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.160 0.840 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.997 -15.709 1.666 16.079 hybrid contribution -1.742 1.373 0.470 2.267 sum 1.254 -14.336 2.136 14.549 Atomic orbital electron populations 1.69616 1.05944 1.28047 1.50735 1.25251 0.95610 0.99695 0.97362 0.85820 0.79722 0.81214 0.77712 1.19222 1.20755 1.20781 1.19735 0.93361 0.82178 1.47454 0.87868 1.41883 1.09187 1.04594 1.64547 1.19753 0.88454 0.84477 0.84546 1.90507 1.13574 1.86959 1.54933 1.21871 0.93558 0.90814 1.02082 1.61321 1.33518 1.00645 1.24893 1.21111 0.93580 0.99543 0.88867 1.20139 0.94987 0.93831 0.93720 1.21977 1.00288 0.93847 1.02262 1.22578 0.87988 0.99670 0.96686 1.67611 1.23282 1.17517 1.11766 1.22722 0.99567 0.88434 0.95923 1.22213 0.92888 1.02110 0.98974 1.22416 1.01637 0.93258 0.93115 1.22965 0.96938 0.96630 1.02917 1.23039 0.98390 1.03363 0.96257 0.91935 0.77536 0.88982 0.93325 0.87902 0.94288 0.85673 0.83425 0.83063 0.84044 0.89901 0.88476 0.89241 0.88866 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.24 13.05 55.50 0.72 -23.51 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.13 9.68 -14.93 -0.14 -8.28 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.57 -13.96 5.29 -10.96 -0.06 -14.02 16 10 C 0.44 10.06 7.30 -10.98 -0.08 9.98 16 11 O -0.58 -14.88 14.76 5.55 0.08 -14.80 16 12 C 0.05 0.82 5.42 -4.97 -0.03 0.79 16 13 N -0.48 -7.66 4.22 -229.53 -0.97 -8.63 16 14 C 0.10 1.47 4.80 -4.98 -0.02 1.45 16 15 C -0.02 -0.26 4.92 -104.32 -0.51 -0.77 16 16 C -0.16 -1.94 8.59 -39.44 -0.34 -2.28 16 17 C 0.09 1.04 11.18 -17.55 -0.20 0.85 16 18 N -0.49 -6.76 10.36 -13.25 -0.14 -6.90 16 19 C 0.09 1.20 11.18 -17.55 -0.20 1.01 16 20 C -0.14 -2.07 9.82 -39.44 -0.39 -2.45 16 21 C 0.00 0.06 3.95 -67.72 -0.27 -0.21 16 22 C -0.16 -1.88 9.82 -26.74 -0.26 -2.14 16 23 C -0.17 -2.03 9.64 -26.74 -0.26 -2.29 16 24 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 26 H 0.09 1.47 7.01 -51.93 -0.36 1.11 16 27 H 0.05 0.76 8.05 -51.93 -0.42 0.35 16 28 H 0.10 1.87 6.48 -51.93 -0.34 1.54 16 29 H 0.04 0.53 8.06 -51.93 -0.42 0.11 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 32 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.14 2.22 8.06 -52.48 -0.42 1.80 16 34 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 35 H 0.10 1.37 8.14 -51.92 -0.42 0.95 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.10 1.32 7.81 -51.93 -0.41 0.92 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -30.54 325.91 -8.42 -38.96 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.16 Total: 12.06 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -2.79 Total: -3.85 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.44 Total: -53.06 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.08 Total: -14.80 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.54 -8.42 -38.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124885183.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.059 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds