Wall clock time and date at job start Mon Mar 30 2020 02:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99620 * 2 1 4 4 H 1.48504 * 109.46841 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47113 * 300.00205 * 3 2 1 6 6 H 1.48500 * 109.46848 * 60.00560 * 3 2 1 7 7 C 1.38951 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99496 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99783 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99669 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99971 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99831 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46754 * 185.44216 * 12 10 9 14 14 C 1.46897 * 111.00131 * 71.90770 * 13 12 10 15 15 C 1.50701 * 109.47359 * 189.99682 * 14 13 12 16 16 C 1.38646 * 120.79145 * 269.71604 * 15 14 13 17 17 C 1.38209 * 119.16339 * 179.79573 * 16 15 14 18 18 N 1.31864 * 120.76184 * 0.49049 * 17 16 15 19 19 C 1.31872 * 121.72838 * 359.74058 * 18 17 16 20 20 C 1.38206 * 120.76158 * 0.02562 * 19 18 17 21 21 C 1.46903 * 110.99921 * 195.85955 * 13 12 10 22 22 C 1.52994 * 117.50262 * 132.60749 * 21 13 12 23 23 C 1.52992 * 117.49766 * 63.98498 * 21 13 12 24 24 H 0.97000 * 120.00683 * 359.97438 * 1 2 3 25 25 H 0.97001 * 120.00510 * 0.02562 * 9 7 2 26 26 H 1.08993 * 109.47100 * 65.44137 * 12 10 9 27 27 H 1.08997 * 109.47179 * 305.43853 * 12 10 9 28 28 H 1.09001 * 109.46932 * 309.99553 * 14 13 12 29 29 H 1.09002 * 109.47530 * 69.99505 * 14 13 12 30 30 H 1.08002 * 120.41755 * 0.02562 * 16 15 14 31 31 H 1.08001 * 119.61388 * 180.21043 * 17 16 15 32 32 H 1.07996 * 119.61746 * 180.02562 * 19 18 17 33 33 H 1.08004 * 120.41388 * 179.97438 * 20 19 18 34 34 H 1.09004 * 115.54819 * 278.31842 * 21 13 12 35 35 H 1.09008 * 117.49811 * 359.97438 * 22 21 13 36 36 H 1.08994 * 117.50072 * 145.01575 * 22 21 13 37 37 H 1.09005 * 117.49642 * 214.98263 * 23 21 13 38 38 H 1.09000 * 117.49995 * 359.97438 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8893 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2032 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5577 -0.0021 12 6 1.2438 -4.8629 -0.0022 13 7 2.1931 -5.9764 0.1281 14 6 2.7499 -6.0374 1.4861 15 6 3.8895 -7.0230 1.5180 16 6 3.6643 -8.3590 1.8123 17 6 4.7335 -9.2347 1.8282 18 7 5.9565 -8.8104 1.5772 19 6 6.2085 -7.5464 1.2982 20 6 5.1889 -6.6142 1.2596 21 6 1.5630 -7.2513 -0.2403 22 6 2.3328 -8.1716 -1.1896 23 6 1.0988 -7.4173 -1.6886 24 1 -0.4851 0.8400 0.0004 25 1 0.3534 -2.3907 -0.0005 26 1 0.6919 -4.9634 -0.9367 27 1 0.5465 -4.8802 0.8353 28 1 3.1143 -5.0513 1.7740 29 1 1.9745 -6.3558 2.1828 30 1 2.6654 -8.7118 2.0228 31 1 4.5658 -10.2776 2.0532 32 1 7.2233 -7.2362 1.0976 33 1 5.4017 -5.5803 1.0309 34 1 0.9611 -7.7204 0.5381 35 1 3.3067 -7.8309 -1.5413 36 1 2.2377 -9.2464 -1.0358 37 1 0.1916 -7.9960 -1.8631 38 1 1.2605 -6.5805 -2.3680 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124885183.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:37 Heat of formation + Delta-G solvation = 15.506119 kcal Electronic energy + Delta-G solvation = -20930.327477 eV Core-core repulsion = 17772.985761 eV Total energy + Delta-G solvation = -3157.341716 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.20796 -40.26804 -38.80891 -36.04925 -35.42541 -33.54567 -33.12691 -32.04628 -29.19478 -27.08982 -25.67796 -24.31245 -23.25152 -22.92467 -21.55440 -20.79748 -19.83136 -18.04426 -17.72634 -17.17322 -16.82133 -16.60545 -16.31815 -16.18225 -15.74795 -15.52303 -15.28203 -14.54939 -14.49093 -14.23675 -14.02514 -13.63583 -13.44492 -13.02732 -12.88720 -12.69487 -12.39795 -12.33911 -12.23554 -12.12518 -11.47778 -11.39658 -11.14541 -10.53784 -10.40377 -10.23421 -9.99197 -9.98683 -9.23155 -8.45989 -5.94104 0.28788 0.33564 1.36041 1.41366 1.55031 2.07297 2.27339 2.59990 2.89034 3.04783 3.21420 3.42246 3.62834 3.70504 3.86738 4.05727 4.11369 4.24829 4.26368 4.27872 4.30976 4.38204 4.53681 4.57990 4.67610 4.79003 4.82920 4.86606 4.97449 5.10238 5.12874 5.34765 5.41876 5.54187 5.81036 5.86945 6.04951 6.23593 6.62106 7.07838 7.14624 7.58448 8.14456 8.71727 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023361 B = 0.004356 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.304787 B = 6426.532995 C = 7256.651269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.990 3.010 4 H -0.274 1.274 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.329 4.329 8 H 0.078 0.922 9 N -0.576 5.576 10 C 0.441 3.559 11 O -0.612 6.612 12 C 0.062 3.938 13 N -0.502 5.502 14 C 0.101 3.899 15 C -0.028 4.028 16 C -0.152 4.152 17 C 0.091 3.909 18 N -0.508 5.508 19 C 0.087 3.913 20 C -0.164 4.164 21 C -0.002 4.002 22 C -0.151 4.151 23 C -0.167 4.167 24 H 0.277 0.723 25 H 0.395 0.605 26 H 0.108 0.892 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.155 0.845 31 H 0.184 0.816 32 H 0.166 0.834 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.074 -17.473 2.304 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.459 4.459 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.228 3.772 11 O -0.497 6.497 12 C -0.069 4.069 13 N -0.226 5.226 14 C -0.026 4.026 15 C -0.036 4.036 16 C -0.172 4.172 17 C -0.066 4.066 18 N -0.218 5.218 19 C -0.069 4.069 20 C -0.185 4.185 21 C -0.110 4.110 22 C -0.189 4.189 23 C -0.204 4.204 24 H 0.086 0.914 25 H 0.229 0.771 26 H 0.126 0.874 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.173 0.827 31 H 0.201 0.799 32 H 0.184 0.816 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.087 0.913 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.670 -17.807 1.998 17.997 hybrid contribution -1.306 1.936 0.357 2.363 sum 0.364 -15.871 2.355 16.049 Atomic orbital electron populations 1.69672 1.06776 1.29131 1.50667 1.25982 0.96490 1.02250 0.96448 0.84915 0.78031 0.77367 0.78297 1.19912 1.19689 1.19622 1.19660 0.92603 0.84005 1.49611 0.90432 1.41942 1.09268 1.04685 1.65487 1.20800 0.88354 0.85860 0.82146 1.90488 1.15598 1.87812 1.55851 1.21689 0.93218 0.88232 1.03743 1.61202 1.34035 1.01837 1.25512 1.20970 0.94552 0.97937 0.89151 1.20135 0.94098 0.94874 0.94540 1.22194 1.01802 0.92365 1.00880 1.23190 0.87192 1.01242 0.94954 1.67688 1.24543 1.17204 1.12366 1.22897 0.99967 0.88351 0.95646 1.22117 0.94168 1.01267 1.00940 1.22552 1.02352 0.91836 0.94249 1.22938 0.95663 0.97889 1.02364 1.23099 0.99438 1.02909 0.94981 0.91375 0.77100 0.87407 0.91134 0.91979 0.92008 0.82698 0.79919 0.81642 0.86688 0.87275 0.91321 0.86516 0.85953 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.54 13.05 21.66 0.28 -49.25 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 43.00 29.55 68.60 2.03 45.02 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 7 C -0.33 -18.62 9.68 84.04 0.81 -17.80 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.58 -29.30 5.29 -306.98 -1.62 -30.93 16 10 C 0.44 20.71 7.30 87.66 0.64 21.35 16 11 O -0.61 -33.33 14.76 -3.07 -0.05 -33.38 16 12 C 0.06 2.10 5.42 85.56 0.46 2.56 16 13 N -0.50 -15.65 4.22 -880.09 -3.72 -19.36 16 14 C 0.10 3.08 4.80 85.56 0.41 3.49 16 15 C -0.03 -0.77 4.92 -19.67 -0.10 -0.87 16 16 C -0.15 -3.19 8.59 22.36 0.19 -3.00 16 17 C 0.09 1.88 11.18 84.68 0.95 2.83 16 18 N -0.51 -13.18 10.36 -195.84 -2.03 -15.21 16 19 C 0.09 2.34 11.18 84.68 0.95 3.29 16 20 C -0.16 -5.01 9.82 22.36 0.22 -4.79 16 21 C 0.00 -0.04 3.95 44.91 0.18 0.13 16 22 C -0.15 -3.23 9.82 30.59 0.30 -2.93 16 23 C -0.17 -3.47 9.64 30.59 0.29 -3.18 16 24 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 25 H 0.40 19.12 7.90 -92.71 -0.73 18.39 16 26 H 0.11 3.32 7.01 -2.39 -0.02 3.30 16 27 H 0.07 2.10 8.05 -2.39 -0.02 2.08 16 28 H 0.06 2.39 6.48 -2.39 -0.02 2.37 16 29 H 0.06 1.56 8.06 -2.39 -0.02 1.54 16 30 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.17 3.73 8.06 -2.91 -0.02 3.70 16 33 H 0.11 4.03 8.06 -2.91 -0.02 4.00 16 34 H 0.11 1.97 8.12 -2.39 -0.02 1.95 16 35 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.08 2.02 7.81 -2.39 -0.02 2.00 16 Total: -1.00 -68.33 325.91 1.01 -67.32 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: 0.34 Total: 34.88 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 5.78 Total: 0.90 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -7.09 Total: -114.75 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.05 Total: -33.38 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -68.33 1.01 -67.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124885183.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.827 kcal (2) G-P(sol) polarization free energy of solvation -68.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds