Wall clock time and date at job start Mon Mar 30 2020 02:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 119.99885 * 2 1 4 4 H 1.48503 * 109.46914 * 239.99879 * 3 2 1 5 5 H 1.48491 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47182 * 120.00108 * 3 2 1 7 7 C 1.38951 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00465 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99445 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99598 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00184 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99768 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.46959 * 179.97438 * 12 10 9 14 14 C 1.48563 * 111.00306 * 285.41887 * 13 12 10 15 15 C 1.54375 * 104.59549 * 200.96333 * 14 13 12 16 16 C 1.54260 * 105.06429 * 23.84878 * 15 14 13 17 17 C 1.48565 * 111.00167 * 170.00145 * 13 12 10 18 18 H 1.08998 * 110.50641 * 40.20749 * 17 13 12 19 19 C 1.50698 * 110.40538 * 277.82123 * 17 13 12 20 20 C 1.38660 * 120.78840 * 143.37494 * 19 17 13 21 21 C 1.38205 * 119.16082 * 179.97438 * 20 19 17 22 22 N 1.31867 * 120.76614 * 359.97438 * 21 20 19 23 23 C 1.31874 * 121.72561 * 359.97438 * 22 21 20 24 24 C 1.38201 * 120.76346 * 0.02785 * 23 22 21 25 25 H 0.97005 * 120.00067 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00654 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.46720 * 59.99755 * 12 10 9 28 28 H 1.08993 * 109.47323 * 299.99706 * 12 10 9 29 29 H 1.08998 * 110.41088 * 82.18158 * 14 13 12 30 30 H 1.09005 * 110.41048 * 319.73683 * 14 13 12 31 31 H 1.09013 * 110.32293 * 264.95428 * 15 14 13 32 32 H 1.09000 * 110.41318 * 142.79711 * 15 14 13 33 33 H 1.09001 * 110.32424 * 241.10592 * 16 15 14 34 34 H 1.08995 * 110.40594 * 118.93945 * 16 15 14 35 35 H 1.07995 * 120.41642 * 0.24421 * 20 19 17 36 36 H 1.07995 * 119.61248 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.61619 * 180.02562 * 23 22 21 38 38 H 1.08004 * 120.41638 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0022 13 7 2.1983 -5.9794 0.0027 14 6 2.8246 -6.1451 -1.3343 15 6 3.3423 -7.5995 -1.3438 16 6 2.4750 -8.3406 -0.3055 17 6 1.5062 -7.2717 0.2441 18 1 0.5591 -7.3040 -0.2946 19 6 1.2779 -7.4779 1.7193 20 6 0.1203 -8.0864 2.1801 21 6 -0.0542 -8.2590 3.5402 22 7 0.8643 -7.8533 4.3950 23 6 1.9775 -7.2719 3.9926 24 6 2.2212 -7.0656 2.6480 25 1 -0.4850 0.8401 -0.0004 26 1 0.3534 -2.3907 0.0005 27 1 0.6174 -4.9212 -0.8880 28 1 0.6168 -4.9201 0.8919 29 1 3.6522 -5.4462 -1.4556 30 1 2.0846 -5.9999 -2.1214 31 1 4.3919 -7.6297 -1.0511 32 1 3.2125 -8.0427 -2.3311 33 1 3.0988 -8.7345 0.4969 34 1 1.9180 -9.1472 -0.7819 35 1 -0.6334 -8.4250 1.4848 36 1 -0.9532 -8.7317 3.9071 37 1 2.7071 -6.9533 4.7224 38 1 3.1346 -6.5884 2.3247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125502773.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:16 Heat of formation + Delta-G solvation = 6.473179 kcal Electronic energy + Delta-G solvation = -21011.751057 eV Core-core repulsion = 17854.017643 eV Total energy + Delta-G solvation = -3157.733414 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.36533 -38.89459 -37.53082 -33.94110 -32.92639 -32.03765 -31.13996 -31.08143 -28.21022 -26.73945 -24.31351 -23.49261 -23.05212 -20.97139 -20.33058 -19.16399 -17.86974 -17.03425 -16.34489 -15.76408 -15.48987 -15.38115 -14.77632 -14.49754 -14.37630 -13.82307 -13.77592 -13.64845 -13.32839 -12.86691 -12.52219 -12.08263 -12.00930 -11.73915 -11.54358 -11.44971 -11.15619 -11.03002 -10.88489 -10.50984 -10.43618 -10.20811 -9.47870 -9.47387 -9.37236 -9.04280 -8.56919 -8.06675 -7.94781 -6.40725 -3.81620 1.22126 1.33269 3.20465 3.26134 3.30322 3.82710 3.90848 3.97746 4.22081 4.50901 4.54708 4.70951 4.86977 4.97679 5.00297 5.16322 5.22042 5.26482 5.28796 5.36620 5.56225 5.67210 5.71467 5.73849 5.80275 5.87553 5.93237 5.97640 6.12647 6.18281 6.26159 6.36546 6.47775 6.80447 7.06964 7.16599 7.55581 8.04427 8.06565 8.62652 9.18889 9.55286 10.07189 10.77075 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.004634 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.741415 B = 6041.139134 C = 6874.333959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.447 3.553 11 O -0.577 6.577 12 C 0.035 3.965 13 N -0.475 5.475 14 C 0.038 3.962 15 C -0.123 4.123 16 C -0.111 4.111 17 C 0.093 3.907 18 H 0.062 0.938 19 C -0.027 4.027 20 C -0.173 4.173 21 C 0.090 3.910 22 N -0.491 5.491 23 C 0.091 3.909 24 C -0.135 4.135 25 H 0.272 0.728 26 H 0.391 0.609 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.130 0.870 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.638 -16.796 0.183 16.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.232 3.768 11 O -0.460 6.460 12 C -0.097 4.097 13 N -0.199 5.199 14 C -0.090 4.090 15 C -0.161 4.161 16 C -0.149 4.149 17 C -0.016 4.016 18 H 0.080 0.920 19 C -0.035 4.035 20 C -0.193 4.193 21 C -0.067 4.067 22 N -0.200 5.200 23 C -0.065 4.065 24 C -0.155 4.155 25 H 0.082 0.918 26 H 0.224 0.776 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.148 0.852 36 H 0.168 0.832 37 H 0.171 0.829 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.306 -16.606 1.486 16.676 hybrid contribution -0.914 0.970 -1.523 2.024 sum -0.608 -15.636 -0.037 15.648 Atomic orbital electron populations 1.69603 1.05949 1.28235 1.50629 1.25250 0.95615 0.99689 0.97352 0.85925 0.78766 0.80511 0.79062 1.19934 1.20986 1.19882 1.19638 0.93298 0.82202 1.47681 0.87985 1.41851 1.09144 1.04579 1.64634 1.19631 0.88366 0.84359 0.84446 1.90503 1.13573 1.86961 1.54995 1.22055 0.94210 0.91901 1.01527 1.65019 1.26430 1.00009 1.28422 1.23147 0.99938 0.96861 0.89035 1.22314 1.00293 0.95028 0.98471 1.22289 0.97231 0.96588 0.98790 1.21607 0.97051 0.91647 0.91264 0.92002 1.20098 0.93303 0.94773 0.95340 1.21994 0.98177 1.01813 0.97324 1.22624 0.97636 0.96914 0.89510 1.67631 1.02310 1.10359 1.39714 1.22803 0.94294 0.94828 0.94594 1.22155 1.01216 0.98804 0.93323 0.91841 0.77576 0.93120 0.89680 0.88320 0.94243 0.90841 0.91482 0.90868 0.91246 0.85246 0.83155 0.82904 0.83578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.57 -14.43 5.29 -10.96 -0.06 -14.48 16 10 C 0.45 10.54 7.63 -10.98 -0.08 10.46 16 11 O -0.58 -15.40 14.80 5.55 0.08 -15.32 16 12 C 0.03 0.63 5.26 -4.98 -0.03 0.60 16 13 N -0.48 -7.63 3.93 -224.94 -0.88 -8.51 16 14 C 0.04 0.56 5.92 -2.18 -0.01 0.55 16 15 C -0.12 -1.39 7.00 -25.35 -0.18 -1.57 16 16 C -0.11 -1.18 6.54 -25.35 -0.17 -1.35 16 17 C 0.09 1.18 2.49 -67.22 -0.17 1.01 16 18 H 0.06 0.73 7.93 -51.93 -0.41 0.32 16 19 C -0.03 -0.34 4.53 -104.32 -0.47 -0.82 16 20 C -0.17 -1.97 9.80 -39.44 -0.39 -2.36 16 21 C 0.09 1.07 11.18 -17.55 -0.20 0.87 16 22 N -0.49 -6.85 10.36 -13.25 -0.14 -6.98 16 23 C 0.09 1.22 11.18 -17.55 -0.20 1.03 16 24 C -0.14 -1.88 9.41 -39.44 -0.37 -2.25 16 25 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 27 H 0.05 0.83 7.77 -51.93 -0.40 0.43 16 28 H 0.08 1.48 7.78 -51.93 -0.40 1.08 16 29 H 0.10 1.75 7.24 -51.93 -0.38 1.38 16 30 H 0.04 0.56 7.75 -51.93 -0.40 0.16 16 31 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.79 7.82 -51.93 -0.41 0.39 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 37 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.15 2.18 7.74 -52.48 -0.41 1.77 16 LS Contribution 320.42 15.07 4.83 4.83 Total: -1.00 -31.57 320.42 -8.14 -39.71 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.18 Total: 10.45 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -2.50 Total: -1.81 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.36 Total: -53.99 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.08 Total: -15.32 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.57 -8.14 -39.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125502773.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.185 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds