Wall clock time and date at job start Mon Mar 30 2020 02:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 119.99885 * 2 1 4 4 H 1.48503 * 109.46914 * 239.99879 * 3 2 1 5 5 H 1.48491 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47182 * 120.00108 * 3 2 1 7 7 C 1.38951 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00465 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99445 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99598 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00184 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99768 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.46959 * 179.97438 * 12 10 9 14 14 C 1.48563 * 111.00306 * 285.41887 * 13 12 10 15 15 C 1.54375 * 104.59549 * 200.96333 * 14 13 12 16 16 C 1.54260 * 105.06429 * 23.84878 * 15 14 13 17 17 C 1.48565 * 111.00167 * 170.00145 * 13 12 10 18 18 H 1.08998 * 110.50641 * 40.20749 * 17 13 12 19 19 C 1.50698 * 110.40538 * 277.82123 * 17 13 12 20 20 C 1.38660 * 120.78840 * 143.37494 * 19 17 13 21 21 C 1.38205 * 119.16082 * 179.97438 * 20 19 17 22 22 N 1.31867 * 120.76614 * 359.97438 * 21 20 19 23 23 C 1.31874 * 121.72561 * 359.97438 * 22 21 20 24 24 C 1.38201 * 120.76346 * 0.02785 * 23 22 21 25 25 H 0.97005 * 120.00067 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00654 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.46720 * 59.99755 * 12 10 9 28 28 H 1.08993 * 109.47323 * 299.99706 * 12 10 9 29 29 H 1.08998 * 110.41088 * 82.18158 * 14 13 12 30 30 H 1.09005 * 110.41048 * 319.73683 * 14 13 12 31 31 H 1.09013 * 110.32293 * 264.95428 * 15 14 13 32 32 H 1.09000 * 110.41318 * 142.79711 * 15 14 13 33 33 H 1.09001 * 110.32424 * 241.10592 * 16 15 14 34 34 H 1.08995 * 110.40594 * 118.93945 * 16 15 14 35 35 H 1.07995 * 120.41642 * 0.24421 * 20 19 17 36 36 H 1.07995 * 119.61248 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.61619 * 180.02562 * 23 22 21 38 38 H 1.08004 * 120.41638 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0022 13 7 2.1983 -5.9794 0.0027 14 6 2.8246 -6.1451 -1.3343 15 6 3.3423 -7.5995 -1.3438 16 6 2.4750 -8.3406 -0.3055 17 6 1.5062 -7.2717 0.2441 18 1 0.5591 -7.3040 -0.2946 19 6 1.2779 -7.4779 1.7193 20 6 0.1203 -8.0864 2.1801 21 6 -0.0542 -8.2590 3.5402 22 7 0.8643 -7.8533 4.3950 23 6 1.9775 -7.2719 3.9926 24 6 2.2212 -7.0656 2.6480 25 1 -0.4850 0.8401 -0.0004 26 1 0.3534 -2.3907 0.0005 27 1 0.6174 -4.9212 -0.8880 28 1 0.6168 -4.9201 0.8919 29 1 3.6522 -5.4462 -1.4556 30 1 2.0846 -5.9999 -2.1214 31 1 4.3919 -7.6297 -1.0511 32 1 3.2125 -8.0427 -2.3311 33 1 3.0988 -8.7345 0.4969 34 1 1.9180 -9.1472 -0.7819 35 1 -0.6334 -8.4250 1.4848 36 1 -0.9532 -8.7317 3.9071 37 1 2.7071 -6.9533 4.7224 38 1 3.1346 -6.5884 2.3247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125502773.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:16 Heat of formation + Delta-G solvation = -15.107541 kcal Electronic energy + Delta-G solvation = -21012.686867 eV Core-core repulsion = 17854.017643 eV Total energy + Delta-G solvation = -3158.669224 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39889 -40.31269 -39.08000 -35.95850 -33.96248 -33.46713 -32.97277 -32.03670 -29.22238 -28.33938 -26.10388 -24.49934 -24.06652 -22.13398 -21.32175 -20.95388 -19.88833 -18.16583 -17.51448 -17.30713 -16.72015 -16.43500 -16.27829 -16.10339 -15.70604 -15.53866 -14.88490 -14.76470 -14.46756 -14.24997 -13.90339 -13.57459 -13.31834 -13.13760 -12.94977 -12.74041 -12.44671 -12.42315 -12.24334 -12.13078 -12.06850 -11.49864 -11.40773 -10.50610 -10.34961 -10.30556 -10.01986 -10.00227 -9.42000 -8.47191 -5.96041 0.27463 0.34908 1.38709 1.40349 1.51368 2.04576 2.27218 2.71225 2.94287 3.19088 3.30123 3.64136 3.67541 3.71987 3.94557 4.03572 4.11639 4.28400 4.31400 4.32853 4.36870 4.40741 4.47858 4.63998 4.74878 4.79426 4.96274 4.99088 5.05278 5.14117 5.22076 5.27481 5.39171 5.44276 5.84371 5.85201 5.96147 6.07634 6.59635 7.08451 7.12116 7.55277 8.11244 8.70206 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.004634 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.741415 B = 6041.139134 C = 6874.333959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.333 4.333 8 H 0.079 0.921 9 N -0.576 5.576 10 C 0.444 3.556 11 O -0.613 6.613 12 C 0.051 3.949 13 N -0.497 5.497 14 C 0.035 3.965 15 C -0.114 4.114 16 C -0.103 4.103 17 C 0.095 3.905 18 H 0.082 0.918 19 C -0.035 4.035 20 C -0.165 4.165 21 C 0.086 3.914 22 N -0.514 5.514 23 C 0.079 3.921 24 C -0.152 4.152 25 H 0.277 0.723 26 H 0.394 0.606 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.163 0.837 36 H 0.181 0.819 37 H 0.162 0.838 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 -18.254 -0.376 18.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.097 0.903 9 N -0.214 5.214 10 C 0.231 3.769 11 O -0.498 6.498 12 C -0.081 4.081 13 N -0.221 5.221 14 C -0.093 4.093 15 C -0.152 4.152 16 C -0.141 4.141 17 C -0.013 4.013 18 H 0.100 0.900 19 C -0.043 4.043 20 C -0.185 4.185 21 C -0.071 4.071 22 N -0.223 5.223 23 C -0.076 4.076 24 C -0.172 4.172 25 H 0.087 0.913 26 H 0.228 0.772 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.180 0.820 36 H 0.198 0.802 37 H 0.179 0.821 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.202 -18.085 0.927 18.149 hybrid contribution -0.451 1.364 -1.335 1.961 sum -1.653 -16.721 -0.408 16.808 Atomic orbital electron populations 1.69667 1.06863 1.29331 1.50430 1.26027 0.96522 1.02380 0.96295 0.85001 0.77777 0.76686 0.78951 1.19582 1.19449 1.19824 1.19612 0.92650 0.83978 1.49965 0.90336 1.41931 1.09214 1.04751 1.65463 1.20667 0.88280 0.85742 0.82170 1.90477 1.15554 1.87820 1.55994 1.21834 0.93898 0.89529 1.02808 1.64925 1.26905 1.01060 1.29255 1.23100 0.98924 0.98422 0.88854 1.22272 0.99984 0.92647 1.00282 1.22298 0.96838 0.96553 0.98428 1.21717 0.98098 0.90071 0.91377 0.89977 1.20255 0.93705 0.95034 0.95334 1.22298 0.97910 1.00536 0.97707 1.23204 0.97987 0.96114 0.89800 1.67670 1.02824 1.11120 1.40715 1.22961 0.94782 0.95149 0.94740 1.22057 1.01186 0.99932 0.94010 0.91317 0.77214 0.90957 0.88870 0.92304 0.93437 0.91424 0.88814 0.91289 0.88111 0.81954 0.80184 0.82072 0.85575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.40 13.05 21.66 0.28 -50.12 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 3 Si 0.99 43.41 29.55 68.60 2.03 45.44 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.58 -30.14 5.29 -306.98 -1.62 -31.77 16 10 C 0.44 21.51 7.63 87.66 0.67 22.17 16 11 O -0.61 -34.17 14.80 -3.05 -0.05 -34.21 16 12 C 0.05 1.81 5.26 85.56 0.45 2.26 16 13 N -0.50 -15.66 3.93 -865.57 -3.40 -19.07 16 14 C 0.03 1.02 5.92 86.45 0.51 1.53 16 15 C -0.11 -2.36 7.00 31.49 0.22 -2.14 16 16 C -0.10 -1.90 6.54 31.49 0.21 -1.69 16 17 C 0.10 2.17 2.49 44.31 0.11 2.28 16 18 H 0.08 1.58 7.93 -2.39 -0.02 1.57 16 19 C -0.03 -0.83 4.53 -19.67 -0.09 -0.92 16 20 C -0.16 -3.21 9.80 22.36 0.22 -2.99 16 21 C 0.09 1.81 11.18 84.68 0.95 2.76 16 22 N -0.51 -13.74 10.36 -195.85 -2.03 -15.77 16 23 C 0.08 2.13 11.18 84.68 0.95 3.08 16 24 C -0.15 -4.22 9.41 22.36 0.21 -4.01 16 25 H 0.28 14.22 8.31 -92.70 -0.77 13.45 16 26 H 0.39 19.72 7.90 -92.71 -0.73 18.98 16 27 H 0.07 2.25 7.77 -2.39 -0.02 2.23 16 28 H 0.09 3.15 7.78 -2.39 -0.02 3.13 16 29 H 0.06 2.19 7.24 -2.39 -0.02 2.17 16 30 H 0.05 1.30 7.75 -2.38 -0.02 1.28 16 31 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.35 7.82 -2.39 -0.02 1.33 16 34 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.16 3.78 8.06 -2.91 -0.02 3.75 16 38 H 0.13 3.96 7.74 -2.91 -0.02 3.93 16 Total: -1.00 -70.04 320.42 1.23 -68.81 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 0.34 Total: 32.90 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 5.68 Total: 3.78 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -6.77 Total: -116.73 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.05 Total: -34.21 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -70.04 1.23 -68.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125502773.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.703 kcal (2) G-P(sol) polarization free energy of solvation -70.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds